Bhi08G001673 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001673
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Small nuclear ribonucleoprotein-associated protein B
Location	chr8: 59226867 .. 59229134 (+)
RNA-Seq Expression	Bhi08G001673
Synteny	Bhi08G001673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAAATGAGAAGAAAAATTGATTTTTTTTTCCTAAGAATTTGAGTTTTTATTTATTTATTTATGGGATGTTACTCCACTCTCTTTCATCGTCGACGAGAAGCTCAGAAACAGAATCGGCCGCCAAGTTCGCCTCTGTTCTGCCGTCTACCACCATCTTCTTTCTCCTTTCCTGCTGTGGGTATGATTCTGGAGCTTTTATCTTTATTGTTTTCTCTATTTTAATTAGCCAAGCAATATGTTTTGAATATTCTACTTACTCCATTTCGGTGGATCCTTCGTGCTTTCGAGGTGATTCAAAATTGATCGTTTCTTTTCTCACTGCCATCTGATTACTGGGTTTCTGTTAGGTCGAACATGAATTGGCTGAATGCTGGGTTAGAAATTGAACCTGAATCAGACCAGCCTCTGAATGGGCAATGGTTGAAGGGCATTTGATATAATAACTTGGAGATTAAGGGTTTTAAGTTTTAGTAGATGCTTACATTGATAGAATACTGTGTAAATGGAATTAGTGATAATCTTGACTTGTAACGTTTGAAATATGATCAATTGACAGCTTATTGAACAAGTACAACCCTAATCAGTCGGCCAGTTTCGAGGATGGTTGCATGGATGGGTGGGTGTATGCTTATTAGTTATTATGATTTGTTTTTTTTTCTATGTTCCATACTTCATACCTTGCTGGCTTCTCGATGCATGTAATCTGTGCTCTAAATTCTAAAAGAAGGCCTAGTGAAAAGGTGAGATTTGTTTGGATTGATTCTAATAACTTTGATTATTGAAGGTTGCTAGTGAATGTTGATTCTAATTCCTTACCAAGAATTGCTTTGAAATCTGCTGCCATAACCATTTTAATTTTAACTATTTCCTTTAGTTCAAAGGAAAATGTGCTTTTGCTTTACCCTACCCTTGTTGAAACACTCGTGCCCAAAAGGGTCACAACTTGCGTTAATTAGTCATGTCAATAGCTTTAGTCCAATTGAGTAGTTGTTCTCTTTATTCCTCCACTTTCCTCCTCCCTCTGTACCTTCAACTGGGCCTCCTTCAATATCATCTCTAATGGTGATTGTGAGAGACATTCTTTTGAGTTTTGACAAAAAGATGTTATTATTAGCTATATGCTAGACTCTTTGTTCAATTCATAGGCTCACTCTATAGTGTTGCTTTTCTTGGTTGAGATAACTAGATAATTAAAGTGGGTTAGGTATCTTATATCATGATCTCTGGTAGAGTTATCATCATTGCTATCCATTACTTGTTGCTTGCATATGCCCTTATATGTGGTAGTTCTTCATATGGGAATTGTTCTTATGGTGAATACAGTTCTCTGCGTAATTGTATTCAGCTCTTAAGGACGATGTTTGTTATAATGGAATTGTATGATTAAGACCTGATATTTTCCTTCCATTAGTTTTTCATTCCTTGCTGATGCTATAGAGCATGCTCCCTTCTTTTTAGAGTGAATTGTGTTTCTTGTGTTTAACATTCATTACTTTTACAGCTTTGATCTTTTCCTCTTTTCACAAAATCTTCAATCCTTCTCATTCCGATAATTGGAATGGAACCCCCTTTTTCACTCAGATTACACTGGCTTTAGTTGCAATTCTGATAATATAATTGGTCTTGCTCATCAACTACATCTACATTTCCACTTATAGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGAAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGTGTAGGAAAGGTGAGAAGGCTGTTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAGCTTTTACTGCATTGACAAGCAAGGAAATATTATCCTCCAAGATGCAGTAGAGTATCGTAGCACTCGGCATAGCTCGCCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATATAGATAGTACCATTGATGAAAAATTGGCACTGCTATCAGTTTAGCAAATAAGATCAAACCTGAGTTTATGAGGGGATGAAAAAAAATCTGCATACTTGTTTGATGAGAATGTTTATGACTGTTTCTATTACTACAGAAAAATAGTAAAACAATATGATGTTTTTGGTAGAAACATGGGATTAGGAAATACGTTTTATTTCCCTTGATAGACTCTGAATAATCAGTGCACATTCTCACTTTATTAAGTTGAAGATTGCAATGCAAGATAGAACCTTTAAATAGATTGCCG

mRNA sequence

CAAAAAAATGAGAAGAAAAATTGATTTTTTTTTCCTAAGAATTTGAGTTTTTATTTATTTATTTATGGGATGTTACTCCACTCTCTTTCATCGTCGACGAGAAGCTCAGAAACAGAATCGGCCGCCAAGTTCGCCTCTGTTCTGCCGTCTACCACCATCTTCTTTCTCCTTTCCTGCTGTGGCTTATTGAACAAGTACAACCCTAATCAGTCGGCCAGTTTCGAGGATGGTTGCATGGATGGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGAAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGTGTAGGAAAGGTGAGAAGGCTGTTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAGCTTTTACTGCATTGACAAGCAAGGAAATATTATCCTCCAAGATGCAGTAGAGTATCGTAGCACTCGGCATAGCTCGCCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATATAGATAGTACCATTGATGAAAAATTGGCACTGCTATCAGTTTAGCAAATAAGATCAAACCTGAGTTTATGAGGGGATGAAAAAAAATCTGCATACTTGTTTGATGAGAATGTTTATGACTGTTTCTATTACTACAGAAAAATAGTAAAACAATATGATGTTTTTGGTAGAAACATGGGATTAGGAAATACGTTTTATTTCCCTTGATAGACTCTGAATAATCAGTGCACATTCTCACTTTATTAAGTTGAAGATTGCAATGCAAGATAGAACCTTTAAATAGATTGCCG

Coding sequence (CDS)

ATGGAACAAGAATCAGAAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGTGTAGGAAAGGTGAGAAGGCTGTTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAGCTTTTACTGCATTGACAAGCAAGGAAATATTATCCTCCAAGATGCAGTAGAGTATCGTAGCACTCGGCATAGCTCGCCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATATAGATAGTACCATTGATGAAAAATTGGCACTGCTATCAGTTTAG

Protein sequence

MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV

Homology

[Close]

BLAST of Bhi08G001673 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-36
Identity = 71/112 (63.39%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60
           MEQ +E S     S  E +    D + ++R+LLFR+ML+GIKDGRFFLG+F+CIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 113
           ILQD VEYRS R SSPSP EQRCLG+ILIP+SCR SCH+D +IDE+L+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

[Close]

BLAST of Bhi08G001673 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 21/73 (28.77%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 22 SLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRST-----RHSSP 81
          S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       +  + 
Sbjct: 2  SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE 61

Query: 82 SPMEQRCLGLILI 90
             ++R LGL+L+
Sbjct: 62 EREDRRTLGLVLL 74

[Close]

BLAST of Bhi08G001673 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 21/73 (28.77%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 22 SLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRST-----RHSSP 81
          S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       +  + 
Sbjct: 2  SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE 61

Query: 82 SPMEQRCLGLILI 90
             ++R LGL+L+
Sbjct: 62 EREDRRTLGLVLL 74

[Close]

BLAST of Bhi08G001673 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.7e-06
Identity = 28/88 (31.82%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 23  LDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRSTRHSSPSPMEQ- 82
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R       E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 83  RCLGLILIPNSCRVSCHIDSTIDEKLAL 110
           R LG+ILI     VS  +++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of Bhi08G001673 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 28  KVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRSTRHSSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL 
Sbjct: 32  KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFP-VREPRVLGLA 91

Query: 88  LIPNSCRVSCHID 101
           ++P    VS  ++
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of Bhi08G001673 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 28  KVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRSTRHSSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL 
Sbjct: 32  KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFP-VREPRVLGLA 91

Query: 88  LIPNSCRVSCHID 101
           ++P    VS  ++
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of Bhi08G001673 vs. ExPASy Swiss-Prot
Match: Q17QN3 (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 26  VGKVRRLLFR---RMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRSTRHSS---PSPM 85
           VGK  ++L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +  +   P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHID 101
           E+R LGL+L+     VS  ++
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Bhi08G001673 vs. ExPASy Swiss-Prot
Match: P63162 (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 26  VGKVRRLLFR---RMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEYRSTRHSS---PSPM 85
           VGK  ++L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +  +   P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHID 101
           E+R LGL+L+     VS  ++
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Bhi08G001673 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.4e-52
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60
           MEQES GSMVQDGSNVESNPESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 113
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Bhi08G001673 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60
           MEQES GSMVQ G NVESNP+SLDRVGKVR+LLFRRMLIGIKDGRFFLGSFYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 113
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Bhi08G001673 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.6e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60
           MEQES GSMVQDGSN ESN ESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 113
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Bhi08G001673 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.6e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60
           MEQES GSMVQDGSN ESN ESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 113
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Bhi08G001673 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60
           M+QES GSMVQ GSNVESNP+SLDRVGKVR+LLFRRML+GIKDGRFFLGSFYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 113
           ILQDAVEYRST  SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

The following BLAST results are available for this feature:

BLAST of Bhi08G001673 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	4.9e-36	63.39	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.2	4.9e-04	28.77	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	4.9e-04	28.77	small nuclear ribonucleoprotein associated protein B	[more]

BLAST of Bhi08G001673 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55A45	6.7e-06	31.82	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
Q6GQ67	2.5e-05	38.36	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
A4IGZ4	2.5e-05	38.36	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
Q17QN3	7.4e-05	35.80	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
P63162	7.4e-05	35.80	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of Bhi08G001673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ5	6.4e-52	92.86	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A6J1EKG3	1.2e-50	91.96	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A5D3DAS2	4.6e-50	91.07	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	4.6e-50	91.07	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
A0A6J1KMW6	1.0e-49	90.18	uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 32..89 e-value: 8.1E-7 score: 28.6
None	No IPR available	GENE3D	2.30.30.100		coord: 27..104 e-value: 8.2E-17 score: 62.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 7..111
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 7..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 2.61754E-25 score: 88.7681
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 26..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001673	Bhi08M001673	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex