Bhi08G001609 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001609
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Reverse transcriptase
Location	chr8: 57252659 .. 57253027 (-)
RNA-Seq Expression	Bhi08G001609
Synteny	Bhi08G001609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCAAAGCAAGTTAGATCATTTCATATATTGGAGAATTTCAAAAGATCTGATCTTCTCACAAACATACCAAGAACACTCAGCAAGACATTATATCTTCGTGGACTCCGCCTTCACATGGTTTTTTTCAAATTAAACACAAATGGTGCTTGGTGTCTTTCAACCTCTCCATCTAACTGTGGAGCTATTATTCATAACTCTGAAGGAGCCATTATTGTAACTTTTGGTTGTAAATTGAATCTTCTTCAAAGCCCATTGCAAGCAGAACTTGTAGCTCTCTCATTTAGTCTCTTAAATGTAAATTCCATTGGCTACCAAAACATAATCATTGGAGAAGATTCATTATTAACACTCAAACCCATTAAATAA

mRNA sequence

CTTCCAAAGCAAGTTAGATCATTTCATATATTGGAGAATTTCAAAAGATCTGATCTTCTCACAAACATACCAAGAACACTCAGCAAGACATTATATCTTCGTGGACTCCGCCTTCACATGGTTTTTTTCAAATTAAACACAAATGGTGCTTGGTGTCTTTCAACCTCTCCATCTAACTGTGGAGCTATTATTCATAACTCTGAAGGAGCCATTATTGTAACTTTTGGTTGTAAATTGAATCTTCTTCAAAGCCCATTGCAAGCAGAACTTGTAGCTCTCTCATTTAGTCTCTTAAATGTAAATTCCATTGGCTACCAAAACATAATCATTGGAGAAGATTCATTATTAACACTCAAACCCATTAAATAA

Coding sequence (CDS)

CTTCCAAAGCAAGTTAGATCATTTCATATATTGGAGAATTTCAAAAGATCTGATCTTCTCACAAACATACCAAGAACACTCAGCAAGACATTATATCTTCGTGGACTCCGCCTTCACATGGTTTTTTTCAAATTAAACACAAATGGTGCTTGGTGTCTTTCAACCTCTCCATCTAACTGTGGAGCTATTATTCATAACTCTGAAGGAGCCATTATTGTAACTTTTGGTTGTAAATTGAATCTTCTTCAAAGCCCATTGCAAGCAGAACTTGTAGCTCTCTCATTTAGTCTCTTAAATGTAAATTCCATTGGCTACCAAAACATAATCATTGGAGAAGATTCATTATTAACACTCAAACCCATTAAATAA

Protein sequence

LPKQVRSFHILENFKRSDLLTNIPRTLSKTLYLRGLRLHMVFFKLNTNGAWCLSTSPSNCGAIIHNSEGAIIVTFGCKLNLLQSPLQAELVALSFSLLNVNSIGYQNIIIGEDSLLTLKPIK

Homology

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BLAST of Bhi08G001609 vs. ExPASy TrEMBL
Match: A0A1R3K499 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_02978 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-04
Identity = 24/79 (30.38%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 43   FKLNTNGAWCLSTSPSNCGAIIHNSEGAIIVTFGCKLNLLQSPLQAELVALSFSLLNVNS 102
            FK+NT+ ++ LS+  +  GA++ +S+G+++++   ++N +  PL AE+ A+ F L+    
Sbjct: 1320 FKINTDASFDLSSGEAGLGAVVRDSQGSVLISATARINKVPDPLFAEVYAVRFGLIIARL 1379

Query: 103  IGYQNIIIGEDSLLTLKPI 122
            +G Q+  +  DS+L ++ I
Sbjct: 1380 LGLQSCELECDSMLAVREI 1398

The following BLAST results are available for this feature:

BLAST of Bhi08G001609 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G001609 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G001609 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3K499	7.1e-04	30.38	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_02978 PE=4 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 43..122 e-value: 3.8E-5 score: 25.7
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 46..115 e-value: 1.7E-6 score: 27.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 42..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001609	Bhi08M001609	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity