Bhi08G001535 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001535
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	F-box/kelch-repeat protein SKIP11
Location	chr8: 54277970 .. 54279445 (+)
RNA-Seq Expression	Bhi08G001535
Synteny	Bhi08G001535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCAGGCATCGACCATTTTAACTATGAGGAAACTGATCCTATTAAATCTAGCGCCTTGAGTAAGTGTTGTCTTTCTCTTTTTTTTCTTTTTTCCTTTTGACTTTGTAAATTGGTGGTTTTTTCCCTTTAATTTATTGGATTATATTCTTATCATCATGCGTTTCATAATTTATTCCGTGCCTTCCAATTGGATTTTCTCTCTATTAGAGGGAAGGGGACAAGGACATGTGGATTAATTATTATTCCTGTAGTGAACTATTAATATCACCATCACTTGTCAAAATTTCTTTCTTGACTTACTTTCCAATGGTTTACACAAGATGTTTTAATTCATAAGTCTTGTCAGATTTCATGGTTGAAAATACAGTTAGCTACGTGTCGTGGTTGTTTGTTCCACAATAGTCCATGTGTGCTCAATTTGAATCATGCCTTTTTTAGTTAATCCTACTGGTGGCCGCTTTATTTTTATTGTGTGATGGTTAATATTTGGTGATTGATCCTTGTTAACAAGAATTATTGGTACAGGAAGTTCACTTTGGGAAACTAGTACAGGAAGTTTAATTTTGTCCCTTGAGAATGATCTGACTGTGAGATCAAAAACAACTAAAATCGATGTTAAAGATTTTGTTGCCGATTCATACTCTACAATACTCGGGCAGGATGTAAGTTTCACTGGTTTGGTAATTTCGCTATAATTAGTTAGCTATTTTATATATTCTTGTAAGGTTATATTTTGTCCTTTTTGAAACTGTAATGGTTAAGATTATCGACTATTATTCCATAGAAAGAGTGGATGTTACAACAGTAAAAAAGTATCTCAGGATATTGTCAGGGATCCCCACTTGTATGCATTTTTATTCACTAGAGGTGACATGTGTTATCTTTTTAAGTTACAAAAAAGTTCTCATTTGGCATTTAACTATTACCATTGCTGACTTTCCATTTTGATGGTTGATCTTCACATTTGTCCTTACAAGAAAGTTCTAGGTGAATATTTGAATTCTTGTTAATGAAGAAGTTAAACCAGATGCAGTGTTATGATCTTATATTTATCATGCGCAGGTAGAGGAAATTAATACCTTCTCTCAAGATGATTTATTGACAGAGGATATCTTGATACTTGACACTCAAGCTGAAGTGTTTATATGGATTGGTCAATCCGTTGACCCCAAAGAAAAGCAAAATGCTTGGGAAATTGGTCAGGTAGGAGTAGAGAACTATATTTTGTACACTTCAAAGTTCAATTTTCATTCATGTTGCTTAGTTTTTTATAAACACGGAAGTGTTTATATGGCTTGCATTTAGAGCTTGTCGAGATAGGCTTATTGTTATTGGTGGACCAAGGGCCATGGCGGAAGGTTATATAGAACTCAATTCATGGGTTCCAAGTGAAGGACCTCCAAGGTGGGATTTTCTTGCAAGGAAACCATCTGCAAATTTTGTGTATAACTGTGCTGTGATGGGATGCTGA

mRNA sequence

ATGAAGCCAGGCATCGACCATTTTAACTATGAGGAAACTGATCCTATTAAATCTAGCGCCTTGAGAAGTTCACTTTGGGAAACTAGTACAGGAAGTTTAATTTTGTCCCTTGAGAATGATCTGACTGTGAGATCAAAAACAACTAAAATCGATGTTAAAGATTTTGTTGCCGATTCATACTCTACAATACTCGGGCAGGATGTAGAGGAAATTAATACCTTCTCTCAAGATGATTTATTGACAGAGGATATCTTGATACTTGACACTCAAGCTGAAGTGTTTATATGGATTGGTCAATCCGTTGACCCCAAAGAAAAGCAAAATGCTTGGGAAATTGGTCAGTTTTTTATAAACACGGAAGTGTTTATATGGCTTGCATTTAGAGCTTGTCGAGATAGGCTTATTGTTATTGGTGGACCAAGGGCCATGGCGGAAGGTTATATAGAACTCAATTCATGGGTTCCAAGTGAAGGACCTCCAAGGTGGGATTTTCTTGCAAGGAAACCATCTGCAAATTTTGTGTATAACTGTGCTGTGATGGGATGCTGA

Coding sequence (CDS)

ATGAAGCCAGGCATCGACCATTTTAACTATGAGGAAACTGATCCTATTAAATCTAGCGCCTTGAGAAGTTCACTTTGGGAAACTAGTACAGGAAGTTTAATTTTGTCCCTTGAGAATGATCTGACTGTGAGATCAAAAACAACTAAAATCGATGTTAAAGATTTTGTTGCCGATTCATACTCTACAATACTCGGGCAGGATGTAGAGGAAATTAATACCTTCTCTCAAGATGATTTATTGACAGAGGATATCTTGATACTTGACACTCAAGCTGAAGTGTTTATATGGATTGGTCAATCCGTTGACCCCAAAGAAAAGCAAAATGCTTGGGAAATTGGTCAGTTTTTTATAAACACGGAAGTGTTTATATGGCTTGCATTTAGAGCTTGTCGAGATAGGCTTATTGTTATTGGTGGACCAAGGGCCATGGCGGAAGGTTATATAGAACTCAATTCATGGGTTCCAAGTGAAGGACCTCCAAGGTGGGATTTTCTTGCAAGGAAACCATCTGCAAATTTTGTGTATAACTGTGCTGTGATGGGATGCTGA

Protein sequence

MKPGIDHFNYEETDPIKSSALRSSLWETSTGSLILSLENDLTVRSKTTKIDVKDFVADSYSTILGQDVEEINTFSQDDLLTEDILILDTQAEVFIWIGQSVDPKEKQNAWEIGQFFINTEVFIWLAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC

Homology

[Close]

BLAST of Bhi08G001535 vs. TAIR 10
Match: AT1G14330.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-20
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 88  DTQAEVFIWIGQSVDPKEKQNAWEIGQFFINTEVFIWLAFRACRDRLIVIGGPRAMAEGY 147
           D +++ +  +G+  +  +  N W              LAFRAC +RLIVIGGPR+   GY
Sbjct: 358 DKESKKWFTLGRLPERADSVNGW-------------GLAFRACGERLIVIGGPRSSGGGY 417

Query: 148 IELNSWVPS--EGPPRWDFLARKPSANFVYNCAVMGC 183
           IELNSW+PS    PP W  L RK S+NFVYNCAVMGC
Sbjct: 418 IELNSWIPSSDRSPPLWTLLGRKHSSNFVYNCAVMGC 441

[Close]

BLAST of Bhi08G001535 vs. TAIR 10
Match: AT1G26930.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-20
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DR+IVIGGP+A  EG+IELNSWVPS   P W  L +K S NFVYNCAVM C
Sbjct: 364 LAFRACGDRIIVIGGPKAPGEGFIELNSWVPSVTTPEWHLLGKKQSVNFVYNCAVMSC 421

[Close]

BLAST of Bhi08G001535 vs. TAIR 10
Match: AT2G02870.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSE-GPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC +RLIVIGGP+    G+IELNSW+PS+ GPP+W  L RK S  FVYNCAVMGC
Sbjct: 409 LAFRACGERLIVIGGPKCSGGGFIELNSWIPSDGGPPQWTLLDRKHSPTFVYNCAVMGC 467

[Close]

BLAST of Bhi08G001535 vs. TAIR 10
Match: AT2G02870.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSE-GPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC +RLIVIGGP+    G+IELNSW+PS+ GPP+W  L RK S  FVYNCAVMGC
Sbjct: 409 LAFRACGERLIVIGGPKCSGGGFIELNSWIPSDGGPPQWTLLDRKHSPTFVYNCAVMGC 467

[Close]

BLAST of Bhi08G001535 vs. TAIR 10
Match: AT2G02870.3 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSE-GPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC +RLIVIGGP+    G+IELNSW+PS+ GPP+W  L RK S  FVYNCAVMGC
Sbjct: 409 LAFRACGERLIVIGGPKCSGGGFIELNSWIPSDGGPPQWTLLDRKHSPTFVYNCAVMGC 467

[Close]

BLAST of Bhi08G001535 vs. ExPASy Swiss-Prot
Match: Q84M94 (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana OX=3702 GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-19
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DR+IVIGGP+A  EG+IELNSWVPS   P W  L +K S NFVYNCAVM C
Sbjct: 364 LAFRACGDRIIVIGGPKAPGEGFIELNSWVPSVTTPEWHLLGKKQSVNFVYNCAVMSC 421

[Close]

BLAST of Bhi08G001535 vs. ExPASy Swiss-Prot
Match: Q8L736 (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana OX=3702 GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-18
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSE-GPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC +RLIVIGGP+    G+IELNSW+PS+ GPP+W  L RK S  FVYNCAVMGC
Sbjct: 409 LAFRACGERLIVIGGPKCSGGGFIELNSWIPSDGGPPQWTLLDRKHSPTFVYNCAVMGC 467

[Close]

BLAST of Bhi08G001535 vs. ExPASy Swiss-Prot
Match: Q9CA63 (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana OX=3702 GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPP-RWDFLARKPSANFVYNCAVMGC 183
           +AFRAC D+L+V+GGPRA+  G+IE+N+ VPSEG    W  LA KPS NFVYNCAVMGC
Sbjct: 393 MAFRACGDQLVVVGGPRAIGGGFIEINACVPSEGTQLHWRVLASKPSGNFVYNCAVMGC 451

[Close]

BLAST of Bhi08G001535 vs. ExPASy Swiss-Prot
Match: O81645 (Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 46  KTTKIDVKDFVADSYSTILGQ-DVEEINTFSQDDLLTEDILILDTQAEVFIWIGQSVDPK 105
           K +   V+D    S+S   G+  VEEI+ F QDDLLTE++ +LDT AEVF+W+GQ VDPK
Sbjct: 614 KVSSETVRDPHLFSFSFNRGKFQVEEIHNFDQDDLLTEEMHLLDTHAEVFVWVGQCVDPK 673

Query: 106 EKQNAWEIGQFFIN 119
           EKQ A+EIGQ +IN
Sbjct: 674 EKQTAFEIGQRYIN 687

[Close]

BLAST of Bhi08G001535 vs. ExPASy Swiss-Prot
Match: O81644 (Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 27  ETSTGSLILSLENDLTVRSKTTKIDVKDFVADSYSTILGQ-DVEEINTFSQDDLLTEDIL 86
           E+ST    L  + + T + K +   ++D    S++   G+  VEEI  F+QDDLLTEDI 
Sbjct: 594 ESSTFWFALGGKQNFTSK-KASSETIRDPHLFSFAFNRGKFQVEEIYNFAQDDLLTEDIY 653

Query: 87  ILDTQAEVFIWIGQSVDPKEKQNAWEIGQFFIN 119
            LDT AEVF+W+GQ V+PKEKQ  +EIGQ +I+
Sbjct: 654 FLDTHAEVFVWVGQCVEPKEKQTVFEIGQKYID 685

[Close]

BLAST of Bhi08G001535 vs. ExPASy TrEMBL
Match: A0A6J1JH37 (F-box/kelch-repeat protein SKIP11-like OS=Cucurbita maxima OX=3661 GN=LOC111485052 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DRLIVIGGPRAM EGYIELNSWVPSEGPPRWD LARKPSANFVYNCAVMGC
Sbjct: 376 LAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 433

[Close]

BLAST of Bhi08G001535 vs. ExPASy TrEMBL
Match: A0A5D3D261 (F-box/kelch-repeat protein SKIP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00590 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DRLIVIGGPRAM EGYIELNSWVPSEGPPRWD LARKPSANFVYNCAVMGC
Sbjct: 378 LAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 435

[Close]

BLAST of Bhi08G001535 vs. ExPASy TrEMBL
Match: A0A0A0KVW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604950 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DRLIVIGGPRAM EGYIELNSWVPSEGPPRWD LARKPSANFVYNCAVMGC
Sbjct: 378 LAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 435

[Close]

BLAST of Bhi08G001535 vs. ExPASy TrEMBL
Match: A0A6J1DE00 (F-box/kelch-repeat protein SKIP11 OS=Momordica charantia OX=3673 GN=LOC111019206 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DRLIVIGGPRAM EGYIELNSWVPSEGPPRWD LARKPSANFVYNCAVMGC
Sbjct: 381 LAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 438

[Close]

BLAST of Bhi08G001535 vs. ExPASy TrEMBL
Match: A0A6J1HTC3 (F-box/kelch-repeat protein SKIP11-like OS=Cucurbita maxima OX=3661 GN=LOC111467619 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 125 LAFRACRDRLIVIGGPRAMAEGYIELNSWVPSEGPPRWDFLARKPSANFVYNCAVMGC 183
           LAFRAC DRLIVIGGPRAM EGYIELNSWVPSEGPPRWD LARKPSA+FVYNCAVMGC
Sbjct: 363 LAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSASFVYNCAVMGC 420

The following BLAST results are available for this feature:

BLAST of Bhi08G001535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14330.1	1.6e-20	48.45	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G26930.1	4.7e-20	70.69	Galactose oxidase/kelch repeat superfamily protein	[more]
AT2G02870.1	1.8e-19	69.49	Galactose oxidase/kelch repeat superfamily protein	[more]
AT2G02870.2	1.8e-19	69.49	Galactose oxidase/kelch repeat superfamily protein	[more]
AT2G02870.3	1.8e-19	69.49	Galactose oxidase/kelch repeat superfamily protein	[more]

BLAST of Bhi08G001535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84M94	6.6e-19	70.69	F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana OX=3702 GN=At1g2693...	[more]
Q8L736	2.5e-18	69.49	F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana OX=3702 GN=SKIP11 PE=1...	[more]
Q9CA63	6.1e-17	66.10	F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana OX=3702 GN=At1g7451...	[more]
O81645	3.7e-14	56.76	Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2	[more]
O81644	1.2e-12	47.31	Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2	[more]

BLAST of Bhi08G001535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JH37	3.7e-25	94.83	F-box/kelch-repeat protein SKIP11-like OS=Cucurbita maxima OX=3661 GN=LOC1114850...	[more]
A0A5D3D261	3.7e-25	94.83	F-box/kelch-repeat protein SKIP11-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KVW7	3.7e-25	94.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604950 PE=4 SV=1	[more]
A0A6J1DE00	3.7e-25	94.83	F-box/kelch-repeat protein SKIP11 OS=Momordica charantia OX=3673 GN=LOC111019206...	[more]
A0A6J1HTC3	1.4e-24	93.10	F-box/kelch-repeat protein SKIP11-like OS=Cucurbita maxima OX=3661 GN=LOC1114676...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007122	Villin/Gelsolin	PRINTS	PR00597	GELSOLIN	coord: 76..98 score: 55.93 coord: 105..124 score: 25.68
IPR007123	Gelsolin-like domain	PFAM	PF00626	Gelsolin	coord: 68..107 e-value: 4.1E-6 score: 26.6
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 42..138 e-value: 1.5E-12 score: 49.5
None	No IPR available	PANTHER	PTHR46122:SF2	F-BOX/KELCH-REPEAT PROTEIN SKIP11	coord: 124..182
None	No IPR available	PANTHER	PTHR46122	GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED	coord: 124..182
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 69..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001535	Bhi08M001535	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051015	actin filament binding