Bhi08G000536 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G000536
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	cyclin-dependent protein kinase inhibitor SMR3-like
Location	chr8: 20358170 .. 20359157 (+)
RNA-Seq Expression	Bhi08G000536
Synteny	Bhi08G000536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTATTCAATCGAAACTCAGGTAAAATAAGGAAATACATGTGGAAGTGTATATTTGTTGCATTGGATCCTTCGCCGAAGTGCATAATTTAAAAGGTCTATTTTTTTCTTTATTTTATTTTATTTATGTTGTCTTTTTTTCTCTCTCTCTCTACTTGGAAACACCTTGAGAGCTAAAATCCAAAGCATTGAAAATCACAAGACAAAGAGGAAAGACATGTAGTGGCTTTGATAATTATATATCCTTTCTTTCAAATCTTATATTTTTTCCTATTATATATCATCATTCAATTTTTTCCTCAACACCTCCCCTCTCTCTAAATTTCTCTTTTTTTTTCCTTTTTTTTTTTTATGAAAATTTTCCATGCACGTATAATTATTTGAATTGAAAAATGGGTCTCTTCAATTCAAGTATTTTACTCTCTGAAAATGATGTAAACTCCATGGAATTCACTTTTCTTTTGAGATATGTCAATTCCAAGGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGATGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCAACAAGTCTCCGGTGTCCAAAGGCGCCGAGGAAACCGAAACCTCGGCCGTTGACGAAGCGGAAGGCGGCGGAACGACACCGTTTGTTGCTGGATCTTTCCACTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGCGGTAAGATCAAGAGGGTTAGACAATAAAGAAACAAAAACTTTGATTCATAACCAAAAAAAATTGTACTGCTATGGTTTCTTTTTTCTTTTTTCTCTCTTGGGCTTTAGTTGTCAAAATTGATATTGTAGAAATATTGGGTTTCTCTGTTTAGATATGATCTCTCCTCCGGCAGTCTTCTCCGGCAGCGGCGAGGTGCAACTTGTTAGCTTAAAATCTGAATCTTAACATAAATATCATAACAAAATTTATGAATGTCTATTTTCCT

mRNA sequence

CTCGTATTCAATCGAAACTCAGGTAAAATAAGGAAATACATGTGGAAGTGTATATTTGTTGCATTGGATCCTTCGCCGAAGTGCATAATTTAAAAGGTCTATTTTTTTCTTTATTTTATTTTATTTATGTTGTCTTTTTTTCTCTCTCTCTCTACTTGGAAACACCTTGAGAGCTAAAATCCAAAGCATTGAAAATCACAAGACAAAGAGGAAAGACATGTAGTGGCTTTGATAATTATATATCCTTTCTTTCAAATCTTATATTTTTTCCTATTATATATCATCATTCAATTTTTTCCTCAACACCTCCCCTCTCTCTAAATTTCTCTTTTTTTTTCCTTTTTTTTTTTTATGAAAATTTTCCATGCACGTATAATTATTTGAATTGAAAAATGGGTCTCTTCAATTCAAGTATTTTACTCTCTGAAAATGATGTAAACTCCATGGAATTCACTTTTCTTTTGAGATATGTCAATTCCAAGGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGATGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCAACAAGTCTCCGGTGTCCAAAGGCGCCGAGGAAACCGAAACCTCGGCCGTTGACGAAGCGGAAGGCGGCGGAACGACACCGTTTGTTGCTGGATCTTTCCACTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGCGGTAAGATCAAGAGGGTTAGACAATAAAGAAACAAAAACTTTGATTCATAACCAAAAAAAATTGTACTGCTATGGTTTCTTTTTTCTTTTTTCTCTCTTGGGCTTTAGTTGTCAAAATTGATATTGTAGAAATATTGGGTTTCTCTGTTTAGATATGATCTCTCCTCCGGCAGTCTTCTCCGGCAGCGGCGAGGTGCAACTTGTTAGCTTAAAATCTGAATCTTAACATAAATATCATAACAAAATTTATGAATGTCTATTTTCCT

Coding sequence (CDS)

ATGGGTCTCTTCAATTCAAGTATTTTACTCTCTGAAAATGATGTAAACTCCATGGAATTCACTTTTCTTTTGAGATATGTCAATTCCAAGGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGATGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCAACAAGTCTCCGGTGTCCAAAGGCGCCGAGGAAACCGAAACCTCGGCCGTTGACGAAGCGGAAGGCGGCGGAACGACACCGTTTGTTGCTGGATCTTTCCACTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGCGGTAAGATCAAGAGGGTTAGACAATAA

Protein sequence

MGLFNSSILLSENDVNSMEFTFLLRYVNSKEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPKAPRKPKPRPLTKRKAAERHRLLLDLSTEIQSLFPADFLVGLGGKIKRVRQ

Homology

[Close]

BLAST of Bhi08G000536 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.0e-05
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 45  DDDNGFKTPTSLEHKIP--TSLRCPKAPRKPKPRPL--TKRKAAE---RHRLLLDLSTEI 102
           +++ G KTPTS +HKIP      CP APRKPKP     TKRK       +R+ +DLS EI
Sbjct: 39  NEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREI 98

[Close]

BLAST of Bhi08G000536 vs. TAIR 10
Match: AT5G59360.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 25/76 (32.89%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 44  EDDDNGFKTPTSLEHKIPTSLRCPKAPRKPKPRPLTKRKA--AERHRLLLDLSTEIQSLF 103
           +D+++  K P +  +        P+ PRKPK  P  KR+    +R  + LD++ E++S+F
Sbjct: 78  KDEESPVKIPETPRNSNSVCYCPPRPPRKPKAIPSMKRRGMWVKRSVVFLDVAREVESMF 137

Query: 104 PADFLVGLGGKIKRVR 118
           P   L   G KIK+ R
Sbjct: 138 PPSVLQDFGKKIKKAR 153

[Close]

BLAST of Bhi08G000536 vs. ExPASy TrEMBL
Match: A0A0A0LY05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNSMEFTFLLRYVNSKEEEEEKNGSNLV--------VEDDDNGFKT 60
           MGLFNSSILLSENDVNSMEFTFLLRYVNSKE+++E++G            VEDDDNGFKT
Sbjct: 1   MGLFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKT 60

Query: 61  PTSLEHKIPTSLRCPKAPRKPKPRPLTKRKAAERHRLLLDLSTEIQSLFPADFLVGLGGK 119
           PTSLEHKIPTSL+CP APRKPKPR LTKRKA ERHRLLLDLS+EIQSLFPA+FLVGLGGK
Sbjct: 61  PTSLEHKIPTSLQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGK 120

[Close]

BLAST of Bhi08G000536 vs. ExPASy TrEMBL
Match: A0A5A7VIY0 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold710G00040 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNSMEFTFLLRYVNSKEEEEEK-------NG-SNLVVEDDDNGF 60
           MGL  FNSSILLSENDVNSMEFTFLLRYVNSKE+++E+       NG SN VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPKAPRKPKPRPLTKRKAAERHRLLLDLSTEIQSLFPADFLVGLG 119
           KTPTSLEHKIPTS++CP APRKPKPR LTKRKA ERHRLLLDLS+EIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of Bhi08G000536 vs. ExPASy TrEMBL
Match: A0A1S4E1K5 (cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=LOC107991540 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNSMEFTFLLRYVNSKEEEEEK-------NG-SNLVVEDDDNGF 60
           MGL  FNSSILLSENDVNSMEFTFLLRYVNSKE+++E+       NG SN VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPKAPRKPKPRPLTKRKAAERHRLLLDLSTEIQSLFPADFLVGLG 119
           KTPTSLEHKIPTS++CP APRKPKPR LTKRKA ERHRLLLDLS+EIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of Bhi08G000536 vs. ExPASy TrEMBL
Match: A0A660KRH4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 72/145 (49.66%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNSMEFTFLL-------------RYVNSKEEEEEKN---------- 60
           MG+ +S + LSE D+N+MEF FL+               V  +EEEEE+N          
Sbjct: 11  MGVSDSQMFLSEKDLNAMEFNFLVPPTLEFQEDHGKPEVVKQEEEEEEENKKKKKINIPS 70

Query: 61  ---GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPKAPRKPKPRPLTKRKAAERHRLLLDLS 119
              G    VEDD++GFKTPTSL+HKIP  L+CP APRKPK  PLTKRKAA R R+LLDLS
Sbjct: 71  VTVGEFRDVEDDEDGFKTPTSLDHKIPAILQCPPAPRKPKTIPLTKRKAA-RQRILLDLS 130

[Close]

BLAST of Bhi08G000536 vs. ExPASy TrEMBL
Match: A0A2N9ECP2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS397 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 72/150 (48.00%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNSMEFTFLLR------------------YVNSKEEEEEKNGSNLV 60
           MG+ +S   LSE D+N+ME  FL+R                      K+EEEE    N+ 
Sbjct: 11  MGVSDSQRFLSEKDLNAMELNFLVRPTLDFQEEDHDQLSKKPEVKEEKQEEEEDKCKNIA 70

Query: 61  V------------EDDDN-GFKTPTSLEHKIPTSLRCPKAPRKPKPR--PLTKRKAAERH 118
           V            ED+DN GFKTPTSL+HKIP  L+CP APRKPKP+  P TKRKA  R 
Sbjct: 71  VSSLKLKIPCSVEEDEDNDGFKTPTSLDHKIPVILQCPPAPRKPKPKSIPSTKRKAG-RR 130

The following BLAST results are available for this feature:

BLAST of Bhi08G000536 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02420.1	8.0e-05	46.88	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT5G59360.1	2.3e-04	32.89	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

BLAST of Bhi08G000536 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY05	1.1e-46	81.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1	[more]
A0A5A7VIY0	1.2e-45	82.03	Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S4E1K5	1.2e-45	82.03	cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A660KRH4	3.3e-22	49.66	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1	[more]
A0A2N9ECP2	8.0e-21	48.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS397 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..82
None	No IPR available	PANTHER	PTHR33142:SF66	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 30..118
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 30..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000536	Bhi08M000536	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus