Bhi08G000268 (gene) Wax gourd (B227) v1

Overview
NameBhi08G000268
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 11144050 .. 11144261 (+)
RNA-Seq ExpressionBhi08G000268
SyntenyBhi08G000268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

mRNA sequence

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

Coding sequence (CDS)

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

Protein sequence

IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSHVRTRREEDKF
Homology
BLAST of Bhi08G000268 vs. ExPASy TrEMBL
Match: A0A5D3CPR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00370 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 32/49 (65.31%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           IA+FVDGLKE+I EQ+DLQP+ TL AAISMA+K E+KLEK+Q++N +++
Sbjct: 142 IAKFVDGLKEDIHEQVDLQPIATLLAAISMAFKAEMKLEKRQKNNGTKK 190

BLAST of Bhi08G000268 vs. ExPASy TrEMBL
Match: A0A5D3D505 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001460 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1  IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
          IARFVDGLKE+I EQ+DLQP+ TLPAAI M +K E+KLEK+Q++ ++ R
Sbjct: 33 IARFVDGLKEDIHEQLDLQPMATLPAAILMGFKAEMKLEKRQKNGSTSR 81

BLAST of Bhi08G000268 vs. ExPASy TrEMBL
Match: A0A5A7UUZ0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002800 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           IARFVDGLKE+I EQ+DLQP+ TLPAAI MA K ++KLEK+Q+++ +++
Sbjct: 103 IARFVDGLKEDIHEQLDLQPIATLPAAILMALKAKMKLEKRQKNSGTKK 151

BLAST of Bhi08G000268 vs. ExPASy TrEMBL
Match: A0A5D3CYP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00940 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTS 59
           +A FVD LKE I++Q+DLQP+ TL  AISMA+K E+KLEK++  + +++       TS
Sbjct: 66  LASFVDRLKEGIRKQLDLQPIATLSIAISMAFKAEMKLEKRKIISGTKKNQSDKAFTS 123

BLAST of Bhi08G000268 vs. ExPASy TrEMBL
Match: A0A2I0WXY3 (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027009 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CPR55.5e-0965.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D5057.1e-0965.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UUZ02.1e-0863.27Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CYP44.8e-0548.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2I0WXY35.3e-0444.90RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027009 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000268Bhi08M000268mRNA