Bhi08G000108 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G000108
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	histone H2B-like
Location	chr8: 5006523 .. 5006907 (-)
RNA-Seq Expression	Bhi08G000108
Synteny	Bhi08G000108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTATGTGTTTAAGGTGCTGAAGCAAGTGCATCCAGAGATAGGGATCTCAGGGAAAGCCATGGTCATTTTGAACAATTTCATGAATGATATGTTTCAGAGACTTGCTGATGAGGCAACTAAACTCTCAAAATACACAGGTAAATTGGGATTACGACCAAGAAGGATCTTCTATTATTTGTTATTGTTGTTATTTTGGAGAGGATAATAATGTTTGAATTTTGGTAATTGGTGGATGACATATAATAGGTGGAATGACGCTGTCGTCGAGGGAAATCCAAGGGGCGGTGAGGTTAGTGTTGCCAGGAGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTCTCTGCTTATGTATCTTATGTTCATACGAAAACCTAA

mRNA sequence

AGGTATGTGTTTAAGGTGCTGAAGCAAGTGCATCCAGAGATAGGGATCTCAGGGAAAGCCATGGTCATTTTGAACAATTTCATGAATGATATGTTTCAGAGACTTGCTGATGAGGCAACTAAACTCTCAAAATACACAGGTGGAATGACGCTGTCGTCGAGGGAAATCCAAGGGGCGGTGAGGTTAGTGTTGCCAGGAGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTCTCTGCTTATGTATCTTATGTTCATACGAAAACCTAA

Coding sequence (CDS)

AGGTATGTGTTTAAGGTGCTGAAGCAAGTGCATCCAGAGATAGGGATCTCAGGGAAAGCCATGGTCATTTTGAACAATTTCATGAATGATATGTTTCAGAGACTTGCTGATGAGGCAACTAAACTCTCAAAATACACAGGTGGAATGACGCTGTCGTCGAGGGAAATCCAAGGGGCGGTGAGGTTAGTGTTGCCAGGAGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTCTCTGCTTATGTATCTTATGTTCATACGAAAACCTAA

Protein sequence

RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSAYVSYVHTKT

Homology

[Close]

BLAST of Bhi08G000108 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-28
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYV+KV+KQVHP++GI+ KAM ++N FM DMF+R+A EA +LS YT   TLSSREI+ AV
Sbjct: 153 RYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAV 212

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSY 87
           RLVLPGEL +HA+AEG+KAVS +V Y
Sbjct: 213 RLVLPGELSRHAVAEGSKAVSNFVGY 238

[Close]

BLAST of Bhi08G000108 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-27
Identity = 55/84 (65.48%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP++GISGKAM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVR
Sbjct: 55  YIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 114

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 115 LVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Bhi08G000108 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-27
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP+IGIS KAM I+N+F+ND+F++LA EA+KL++Y    T++SREIQ AVR
Sbjct: 67  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVR 126

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 127 LVLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of Bhi08G000108 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-27
Identity = 55/84 (65.48%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP+IGISGKAM I+N+F+ND+F++LA E+++L++Y    T++SREIQ AVR
Sbjct: 54  YIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 113

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 114 LVLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of Bhi08G000108 vs. TAIR 10
Match: AT5G02570.1 (Histone superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-27
Identity = 55/84 (65.48%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP+IGISGKAM I+N+F+ND+F++LA E+++L++Y    T++SREIQ AVR
Sbjct: 48  YIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 107

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 108 LVLPGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of Bhi08G000108 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.3e-27
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYV+KV+KQVHP++GI+ KAM ++N FM DMF+R+A EA +LS YT   TLSSREI+ AV
Sbjct: 153 RYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAV 212

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSY 87
           RLVLPGEL +HA+AEG+KAVS +V Y
Sbjct: 213 RLVLPGELSRHAVAEGSKAVSNFVGY 238

[Close]

BLAST of Bhi08G000108 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-26
Identity = 55/84 (65.48%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP++GISGKAM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVR
Sbjct: 55  YIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 114

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 115 LVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Bhi08G000108 vs. ExPASy Swiss-Prot
Match: A0A2R8Y619 (Histone H2B type 2-E1 OS=Homo sapiens OX=9606 GN=H2BE1 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-26
Identity = 55/84 (65.48%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y++KVLKQVHP+IGIS KAM I+N+F+ND+F++LA EA +L++Y+G  TL+SRE+Q AVR
Sbjct: 37  YIYKVLKQVHPDIGISAKAMSIMNSFVNDVFEQLACEAARLAQYSGRTTLTSREVQTAVR 96

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           L+LPGEL KHA++EGTKAV+ Y S
Sbjct: 97  LLLPGELAKHAVSEGTKAVTKYTS 120

[Close]

BLAST of Bhi08G000108 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 118.6 bits (296), Expect = 3.6e-26
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP+IGIS KAM I+N+F+ND+F++LA EA+KL++Y    T++SREIQ AVR
Sbjct: 66  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVR 125

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 126 LVLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of Bhi08G000108 vs. ExPASy Swiss-Prot
Match: Q9SI96 (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 118.6 bits (296), Expect = 3.6e-26
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 2   YVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAVR 61
           Y+FKVLKQVHP+IGIS KAM I+N+F+ND+F++LA EA+KL++Y    T++SREIQ AVR
Sbjct: 67  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVR 126

Query: 62  LVLPGELGKHAIAEGTKAVSAYVS 86
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 127 LVLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of Bhi08G000108 vs. ExPASy TrEMBL
Match: A0A5A7UF12 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00860 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYVFKVLKQVHPEIGISG+AM+ILNNFMNDMFQRLA+EATKLSKYTGGMTLSSREIQGAV
Sbjct: 107 RYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAV 166

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSYVHTKT 92
           RLVLPGELGKHAIAEGTKAVS YVSY +  T
Sbjct: 167 RLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 197

[Close]

BLAST of Bhi08G000108 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYVFKVLKQVHPEIGISG+AM+ILNNFMNDMFQRLA+EATKLSKYTGGMTLSSREIQGAV
Sbjct: 146 RYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAV 205

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSYVHTKT 92
           RLVLPGELGKHAIAEGTKAVS YVSY +  T
Sbjct: 206 RLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 236

[Close]

BLAST of Bhi08G000108 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYVFKVLKQVHPE+GISG+AM+ILNNFMNDMFQRLA+EATKLSKYTGGMTLSSREIQGAV
Sbjct: 146 RYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAV 205

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSYVHTKT 92
           RLVLPGELGKHAIAEGTKAVS YVSY +  T
Sbjct: 206 RLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 236

[Close]

BLAST of Bhi08G000108 vs. ExPASy TrEMBL
Match: A0A6J1I190 (histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYVFKVLKQVHPE+GISG+AMVILNN MNDMF+RLA+EATKLSKYTGG TLSSREIQGAV
Sbjct: 129 RYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLSSREIQGAV 188

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSYVHTKT 92
           +LV PGELGKHA+AEGTKAVS YVSY H +T
Sbjct: 189 KLVFPGELGKHAVAEGTKAVSTYVSYDHRRT 219

[Close]

BLAST of Bhi08G000108 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   RYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEATKLSKYTGGMTLSSREIQGAV 60
           RYVFKVLKQVHPE+GISG+AMVILNN MNDMF+RLA+EATKLSKYTGG TLSSREIQGAV
Sbjct: 129 RYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLSSREIQGAV 188

Query: 61  RLVLPGELGKHAIAEGTKAVSAYVSYVHTKT 92
           +LV PGELGKHA+AEGTKAVS YVSY H +T
Sbjct: 189 KLVFPGELGKHAVAEGTKAVSTYVSYDHRRT 219

The following BLAST results are available for this feature:

BLAST of Bhi08G000108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	3.0e-28	66.28	Histone superfamily protein	[more]
AT2G37470.1	1.5e-27	65.48	Histone superfamily protein	[more]
AT2G28720.1	2.6e-27	66.67	Histone superfamily protein	[more]
AT3G53650.1	2.6e-27	65.48	Histone superfamily protein	[more]
AT5G02570.1	2.6e-27	65.48	Histone superfamily protein	[more]

BLAST of Bhi08G000108 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE3	4.3e-27	66.28	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
Q9ZUS0	2.1e-26	65.48	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
A0A2R8Y619	2.8e-26	65.48	Histone H2B type 2-E1 OS=Homo sapiens OX=9606 GN=H2BE1 PE=3 SV=1	[more]
P40283	3.6e-26	66.67	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q9SI96	3.6e-26	66.67	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]

BLAST of Bhi08G000108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF12	3.6e-37	91.21	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3CH74	3.6e-37	91.21	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A0A0LSH9	4.7e-37	90.11	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A6J1I190	3.1e-36	85.71	histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518...	[more]
A0A6J1FBI7	3.1e-36	85.71	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 70..83 score: 69.25 coord: 18..38 score: 54.47 coord: 57..70 score: 78.23 coord: 40..57 score: 46.4
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 2..85 e-value: 8.3E-39 score: 144.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..87
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 2..62 e-value: 6.5E-13 score: 49.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..86 e-value: 3.9E-41 score: 141.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..85
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000108	Bhi08M000108	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity