Bhi07G001487 (gene) Wax gourd (B227) v1

Overview


Name	Bhi07G001487
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein GLE1 isoform X2
Location	chr7: 50240410 .. 50241105 (+)
RNA-Seq Expression	Bhi07G001487
Synteny	Bhi07G001487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTGAAGAGAATTATTTGATGCGGCTAGAAGCATTCATGAAACTATATGGGGCATTGATTCAGGTTTGTCCCTTCTAATAGCTCAAGAAGTACCTTGAAATATCTCATCTTGCTGCTTATTATTTTAGAGATTTATATAATTGGGCTACTCAATGATCAAAATATCAATGTCGATATCGATATCAATATTTCTAGTTTTTACGGATATATCAACGGATACATGGATAAATAAGTCACGAAATTTATAAAATTTATTTAGATTAGTAATTAAGTTGTTTGTACTCTCGAACTAAGTTATGGATGTTGTTATTAGAATTCCTATTCATATTGGACTAAATGGATAATAGTTTTCATGTTTTACGAATATTTATAAAAGATGTTGGAGATATTCATAGATATTTAATATCGATGTCAAACCATTCGATTCACGAATATATTGACGTGTCGATAGATTTCATCCTTGGAGCTACTTTTGTTATCTAGTTACACCCATGTTCAACAGTAATGACATTAGCAATCTATCTATAAAACCAAGTCATGAAAATGGTTCATTTGCAGACAGAAGTTCCTGGTATCCGTAACTTACATGGTCTTGAGGAAGGTTGGGCATGGCTGACAAGATTTCTAAATGCAGTTCCCGCCAATATATATACAGCAACCGCGCTCCGTGCATTCTTACAAGTTGAATAG

mRNA sequence

ATGGAGAGTGAAGAGAATTATTTGATGCGGCTAGAAGCATTCATGAAACTATATGGGGCATTGATTCAGACAGAAGTTCCTGGTATCCGTAACTTACATGGTCTTGAGGAAGGTTGGGCATGGCTGACAAGATTTCTAAATGCAGTTCCCGCCAATATATATACAGCAACCGCGCTCCGTGCATTCTTACAAGTTGAATAG

Coding sequence (CDS)

ATGGAGAGTGAAGAGAATTATTTGATGCGGCTAGAAGCATTCATGAAACTATATGGGGCATTGATTCAGACAGAAGTTCCTGGTATCCGTAACTTACATGGTCTTGAGGAAGGTTGGGCATGGCTGACAAGATTTCTAAATGCAGTTCCCGCCAATATATATACAGCAACCGCGCTCCGTGCATTCTTACAAGTTGAATAG

Protein sequence

MESEENYLMRLEAFMKLYGALIQTEVPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALRAFLQVE

Homology

[Close]

BLAST of Bhi07G001487 vs. TAIR 10
Match: AT1G13120.1 (null )

HSP 1 Score: 76.6 bits (187), Expect = 8.1e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 10  RLEAFMKLYGALIQTE--VPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALRAFLQ 65
           RL++ M+LYGAL+QT+  V    N+HG+E GWAWL RFLN +PAN  TATAL +FLQ
Sbjct: 460 RLDSIMRLYGALVQTDIRVGNATNVHGIEHGWAWLARFLNKIPANRATATALNSFLQ 516

[Close]

BLAST of Bhi07G001487 vs. ExPASy Swiss-Prot
Match: Q0WPZ7 (Protein GLE1 OS=Arabidopsis thaliana OX=3702 GN=GLE1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 10  RLEAFMKLYGALIQTE--VPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALRAFLQ 65
           RL++ M+LYGAL+QT+  V    N+HG+E GWAWL RFLN +PAN  TATAL +FLQ
Sbjct: 460 RLDSIMRLYGALVQTDIRVGNATNVHGIEHGWAWLARFLNKIPANRATATALNSFLQ 516

[Close]

BLAST of Bhi07G001487 vs. ExPASy Swiss-Prot
Match: Q4KLN4 (Nucleoporin GLE1 OS=Rattus norvegicus OX=10116 GN=Gle1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVP-GIR---NLHGLEEGWAWLTRFLNAVPANIYTA 60
           +E ++N+L R+   ++LY A+IQ + P G R   + HGL  GW WL + LN  P +  TA
Sbjct: 560 VEQQDNFLKRMSGMIRLYAAIIQLQWPYGSRQEAHPHGLNHGWRWLAQILNMEPLSDVTA 619

Query: 61  TALRAFLQV 66
           T L  FL+V
Sbjct: 620 TLLFDFLEV 628

[Close]

BLAST of Bhi07G001487 vs. ExPASy Swiss-Prot
Match: Q8R322 (Nucleoporin GLE1 OS=Mus musculus OX=10090 GN=Gle1 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVP-GIR---NLHGLEEGWAWLTRFLNAVPANIYTA 60
           +E ++N+L R+   ++LY A+IQ + P G R   + HGL  GW WL + LN  P +  TA
Sbjct: 561 VEQQDNFLKRMSGMIRLYAAIIQLQWPYGNRQEAHPHGLNHGWRWLAQVLNMEPLSDVTA 620

Query: 61  TALRAFLQV 66
           T L  FL+V
Sbjct: 621 TLLFDFLEV 629

[Close]

BLAST of Bhi07G001487 vs. ExPASy TrEMBL
Match: A0A6J1K7Y4 (protein GLE1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492491 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALR 60
           MES ++YL RLEA+MKLYGAL+QTEVPG RN+HGLEEGWAWL RFLNAVP NIYTATAL 
Sbjct: 490 MESVKDYLKRLEAYMKLYGALVQTEVPGARNIHGLEEGWAWLARFLNAVPPNIYTATALY 549

Query: 61  AFLQV 66
           AFLQV
Sbjct: 550 AFLQV 554

[Close]

BLAST of Bhi07G001487 vs. ExPASy TrEMBL
Match: A0A6J1KA84 (protein GLE1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492491 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALR 60
           MES ++YL RLEA+MKLYGAL+QTEVPG RN+HGLEEGWAWL RFLNAVP NIYTATAL 
Sbjct: 393 MESVKDYLKRLEAYMKLYGALVQTEVPGARNIHGLEEGWAWLARFLNAVPPNIYTATALY 452

Query: 61  AFLQV 66
           AFLQV
Sbjct: 453 AFLQV 457

[Close]

BLAST of Bhi07G001487 vs. ExPASy TrEMBL
Match: A0A6J1GZI1 (protein GLE1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458652 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALR 60
           MES ++YL RLEA+MKLYGAL+QTEVPG RN+HGLEEGWAWL RFLNAVP NIYTATAL 
Sbjct: 393 MESVKDYLKRLEAYMKLYGALVQTEVPGARNIHGLEEGWAWLARFLNAVPPNIYTATALY 452

Query: 61  AFLQV 66
           AFLQV
Sbjct: 453 AFLQV 457

[Close]

BLAST of Bhi07G001487 vs. ExPASy TrEMBL
Match: A0A6J1GYI2 (protein GLE1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458652 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALR 60
           MES ++YL RLEA+MKLYGAL+QTEVPG RN+HGLEEGWAWL RFLNAVP NIYTATAL 
Sbjct: 490 MESVKDYLKRLEAYMKLYGALVQTEVPGARNIHGLEEGWAWLARFLNAVPPNIYTATALY 549

Query: 61  AFLQV 66
           AFLQV
Sbjct: 550 AFLQV 554

[Close]

BLAST of Bhi07G001487 vs. ExPASy TrEMBL
Match: A0A0A0KS46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593410 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   MESEENYLMRLEAFMKLYGALIQTEVPGIRNLHGLEEGWAWLTRFLNAVPANIYTATALR 60
           MES E+YLMRLEA++KLYGALIQTE+PG+RNLHGLEEGWAWL RFLNA+P N++TA +L 
Sbjct: 487 MESVEDYLMRLEAYVKLYGALIQTEIPGVRNLHGLEEGWAWLARFLNAIPPNLFTAASLN 546

Query: 61  AFLQV 66
           AFL+V
Sbjct: 547 AFLKV 551

The following BLAST results are available for this feature:

BLAST of Bhi07G001487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13120.1	8.1e-15	61.40	null	[more]

BLAST of Bhi07G001487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WPZ7	1.1e-13	61.40	Protein GLE1 OS=Arabidopsis thaliana OX=3702 GN=GLE1 PE=1 SV=1	[more]
Q4KLN4	1.2e-07	42.03	Nucleoporin GLE1 OS=Rattus norvegicus OX=10116 GN=Gle1 PE=2 SV=1	[more]
Q8R322	2.1e-07	42.03	Nucleoporin GLE1 OS=Mus musculus OX=10090 GN=Gle1 PE=1 SV=2	[more]

BLAST of Bhi07G001487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7Y4	6.3e-23	83.08	protein GLE1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492491 PE=3 SV=1	[more]
A0A6J1KA84	6.3e-23	83.08	protein GLE1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492491 PE=3 SV=1	[more]
A0A6J1GZI1	6.3e-23	83.08	protein GLE1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458652 PE=3 SV=1	[more]
A0A6J1GYI2	6.3e-23	83.08	protein GLE1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458652 PE=3 SV=1	[more]
A0A0A0KS46	2.4e-22	76.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593410 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012476	GLE1-like	PFAM	PF07817	GLE1	coord: 1..65 e-value: 3.0E-13 score: 49.6
IPR012476	GLE1-like	PANTHER	PTHR12960	GLE-1-RELATED	coord: 1..65
IPR038506	GLE1-like superfamily	GENE3D	1.25.40.510		coord: 1..66 e-value: 1.5E-16 score: 62.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M001487	Bhi07M001487	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
biological_process	GO:0015031	protein transport
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006449	regulation of translational termination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0044614	nuclear pore cytoplasmic filaments
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0000822	inositol hexakisphosphate binding
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0031369	translation initiation factor binding