Bhi07G000278 (gene) Wax gourd (B227) v1

Overview


Name	Bhi07G000278
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Exosome complex component RRP42-like
Location	chr7: 14776461 .. 14782991 (-)
RNA-Seq Expression	Bhi07G000278
Synteny	Bhi07G000278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAAAATCAAATCTCTCCCCTCCTCACTCACGCCTGCAGGCTCCAGAACACCCCCTCGTTTTCTTCAGCCGCCAGACCGCTGCTTGTCGCCGACAGCAGTGGCCGGCACTCCAGTTCCGTCAACCGCCGCCTCCACGAGTACCAGCGCCGCCAATTTTCCCTCCACTCGCTCGTCTTCCGTGCACCAGCGCGCACGCCGGCCGTCGATCCCTGCAGTCGTGCGCCGTCCAGTCGCCAGCCGTCGCATACCTCAACGCCGGTGGTTGGCAGTGCCGTTTTAGCAGCCGTCTCCTCGACGGAGTTTGATTTGGGGTAAGATTGTACTATTTTAATTGAGTTTCTTGGAGATTCTTGAATACCCATCAACTCTTGGCCTCAAGTGGTAGGTACCCATTGTGTTTTGGATTTAGATTGAAGATTGGGAATAATTTTAGTTGCTATCCGGCGGTGTTTTGGGCGTTCGACGTGGGTAAGTAATGATTTCTTTGGTAAATTCTTAGTTACTCATTATGTTATGGTTTGATTTATAATACCCATGAGGATTTTGTTCTTAGATTCAAGGGGTTAAAGTGTGTTAAGTCTTCTGTTAGCGAATTTAAGGCTGATTCGTCAACTTGTTGGTAGGTTCTATAGATTTATAATCGTTTTGGTTGTTTGTGGCTGTTGTGAATTGGGTTTTAGAACCCTTACTTGTGCTTTATGTTTAGGTTGAATTCTTGTTTTGTGGCTTGGAAGTGGTTTTGGTTTAAGCTGCAAATTGGGGTTAATTCAAGAAGAGTTTAATTGCTCGAATTCATTTTGAGGTAAGTGGCTTTACTATTAGTACGTCTACATGTGCACTCTAGTTCCACAGTGTTGGTTTTAATTGAATTTAGAAGCACGTTTAGACCTCGTGAATATGCCATGTATGTGAAGTAACCAAGTTATGCATATGCTAGAGCTATGACAATGTACTATATGTTGTGAGATGTATAGTGATATGAGATACTTAGAAGCATGATAAGAGACAAGGAAAAATGATATGCTTTATGAAGAGCGATGTTATGAGCATGTTTGAATCATGACATGCACTATGAACCCTTTGTGAAGCAAGCCAAGTTAGAACTAGAGCCATTGGGCTTTGTGTTACTTGTGACTACCCCAATAGGGGTTAGTATGGTAACTAGTGAGAAAGTTAGGGACTGTCAGTTAACTGTGTGTGATTGAGTCTTGAATGTGTCACTGATAGTGCTGAATATGGGTTTCGATGTCATTCGGGGAATGGAGTGGTTAGTTGAAAACCACACGATTATTGACTGTTTTCATAGGGAGGAGGTGGTCCAGGTAAGCTCCAAATTTAAGGGGAGTAGAACGGAACATTTGGTTTTAGCATTGAAGGCAAGAAAGCTAATCATCCAAGGAGCCTGGGGTTATTGGCTAATGTGATCGATACGAGTTGTGGTAAGAGAGGCATAACCTCAGTACCGGTGGTGCGGGAGTCTCAAATGTGTTCCCTGAGGATCTCCTAGGACTACCCCCAGCTCCAGAGGTAGATTTTAGCATCAAGTTGGAGCCAGAGATGACTCTCATTTCTAGGGCCCCATAAAGAATGGCCCCAGCGGAGCTGAAAGAACTCAAGTTGCAATTGCAGGAGTTGTTGGACAAAGGGTTCATACGTCCTAGTGTGTCGCTATGGGGTGCTTCGGCTTTGTTTGTTAGAAGGAAGATTAGGACTATGCACTTGGCATAGACTACAAGGAACTAAACAAGGTGACAATGAAAAATAAGTATCCTCTTCTTAGGATTGATGATTTGTTCGACTAGCTACAAGGGGCAACCCTATTCTCAAAGATCTGGAGGCATTACCTCTACGAGGAGAAGGTCTAGATCTTTACCGATCACAAGAGCCTAAAGTACTTCTTCACTCAGAAGGAGTTGAACATGTGACAACATAGGTGGTTAGAATTGGTCATAGACTACGACAATCTTGTATCATCCAAGTAACGCCAATGTAGTGGTTGATGCTCTTAACAAGAAGGCGGTACATTCGTTGGCGTTGATCATAAGTCAAGCTCACATTTGTAGAGACTTTGAGTGCAGAGATAGCAGTAGCAGTGGTAGTTGGGGAAGCTACCTCTTTGTTGGCTCAGTTGTCAGTACAGTCCACATTGAGGCAGCGTATCATTGAGGGTCAGCAGAATGACCCTAGCTTAGCCACAGTATTTCGCCAGGAGAAGGTCGGAGGAAGAGTGAATTCTCTTTGTTGTCAGATAACAGCCTCGGGTATCAGGGGCGTCTGTGTGTGCCGGAGGATGCTGGACTTAAGGCAAAGTTGTTGGCTAAGGCTCACAACTTTCGATTTTCCATACACCTGGGTGGCACTAAGATGTACCTAGACTTTAAGGGATATTGCCAATTTTGTTTGCAAGTGCTTGATGTGCCAGCAGGTTAATGCTCCAAAATAGAAACCAGTGTGGTTGTTACACCCACTCAAAGTGCTAGAGTGGAAGTGAGAGCAAGTGTTGATGGATTTCATTGCGGGGTTGCTGCGGACTGCAAAAGGTCATACTATAATATGTGATGTAGTAGATTGACTTGCCAAGTTGGCCCACTTCATTCCAAGGAGGCCTTCGTTTTTAACGGATAGATGGGCACAATTATACATGAAGGAGATCATTAGGCTGCACGGGGTGCCAGTTTCTATCATTTCTGATTGAGACCCCTGCTTCACATCTAACTTTTGGTAAGGGCTGTAGAGGGCATTATGTACTCGAGTGGAGTTGAATACATCTTTCCATCCTCAGACATACGGCCAAACAGAGCAGTTGAATGTGATTCTAGGGATATGTTGCAAGCTTCTGTGTTGGATTTTAGAGATATTGGGACTCTCACTTGCAACTGGTGGAGTTCGCCTATAATAACAGTTATCAGGTCACGATTGGTATGGTGCCTTATGAGGCTCTTTATGGAAGGAAATGTAGATCTCCTGTTCGTTGGGGTGAGGTTGGAGAGCACAAATTGTTGGGTCCAGAGTTAGTCAAGAGGACGAAAGAAGGAATTCAAAGGATTAGAAGAAGAATGAAAATGGCCCAAAGTAGGATAAGGTCTTCTTGAAAGTGGCTCCAATAAAAGGTATCTTGAGGTTTGGAAGGAAGGGCAAGTTGAGCCCACGATTCATAGGGCCATTTGAGGTCTTGTTGCAAATTGGTCCGGTAGCTTATCATTTGGCTTTACCTCCATCTCTCTCGATAGTGCATAATGTGTTTCATGTATCTATATTACGTGGCTACATAACAGATCTTGCCCATGTGTTGGATTTTCAAGCCTTGCATTTGAGTGAGAATCTGAGTTACAAAGAGGCACCGATGCAGATTTTTGCAAGGGATGTAAAATTTTTGTGTAACTGGGAGATAGCACTGGTGAAGGTGCTCTAGCGGAACCTTCAGATTGAGGAATCGATGTGGCAGCATGAGGACAAAATGAGGGCTAAGCACCGTAAAAGTTAGTCTTTCGGACAGCTCTTGAATTTAAGTCTCCTTTGAACTCACTCCAATAGTGAACACTACAGGCCTCTTGCCGGCGAAGCACCTTAAGAGTTTGTAGCAGACCCGCTGCCGTCCGTTGCCAACGTCTACATTCGAGTCGTGCCATGAGTAACATTTACCTTCTCATTTTCTTTCTTCTCAGTCTTTAATCTCTGTTTATGCTAAAACCCCAATCCCAATCCTACTCAACCCAATATTGCGAAAACATTGTCAAAACCTTCTGCTTCTGGGTTCTAATTTCCAGTTGGTTTTGTGTGCTTCATCAGATTCTTTTTCCTGAAAAGTAGGAATGGTGGGCCTTTCTATTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTAACTTATCGACCAATTTCTGTAGAAACTGATGTGATCTCTCAGGTATAATCAAAATAAGGTAGTGATTCTGCTTTCTTTGGTCCTTCTTCCCCTTTATGTGTTTTAATCTCGCAATGCTCTTAATTTTAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACCGTGAAGGTATAAAATGTTTGAGCTTCTTTCTTTTTGAATTATGCTAGTCACTACATTTTAACCGAGTGGCATGCTCCTGGTTCTGCTGCAAAAGATTGAAACCCTTGTTTTTTTTTTGTTTTCGTTTGTGAAACTTTAAACGTTTATTCAGTATGATAATGACTACTTAGATATGTTGAAGTGCAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGTAGCCCAATTGCGGAGCCAGCGTTTGAGGTGTGGTAACTTGCATTTTTCTTAACAAAATTTGTTCATCCATGTGTTGTAGGATTGCCAGTGAATGGTTTGGTTTAATGGTGTTTTGTTGGAAGCAATCGGAATTTCATTTTATGTTGGAGAATAGGAGGTAATAATAAGTGAAAAATGGAAGGTTGGGCATCAACAGCTAGATTTGATATTCAGTACATAGTTCTTGTTGATAAAATGAAATTGATAGAAAAATAATACTGCTGAAGCAATAATATTATCCATGAGAATAGTGCATGGTGGAGGAGCACCCCTGCCCCTTCGTGAAAAGGGTCGTTCGTTGTGATTGGCTTGTTTTTGTGGTATTTTATGGGGTTGTTGGCGTGAAAGAAACAATAGGTTTTTCAGGGGGATTGAGGAGTCTTAGGTCAGGTGCAGTCCTTTGTTAGATTTCAAACCTCTCTAGGTTTTTATTTGTAAATACTCTCTAGGTTTCCATTTTTTTCATTTGTTCACAATGAAAGTAGTGGATCTTTCATCAAACTGGTGTATATCGCATCCACTTGTGCAGTCTTTATTTCCATATGTACTTTTTGCCATGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTAGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTCGCTCTCGATCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGACTCATGACTAGAAAAACAGATCAATAACTTTTGCACTTGATGACGAAGTGTGCTTTTGTTGCTTCAGGGGCTGCGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATATTGAGGGCCTGGTCATAAGCTCAGAGGGCAATCTTTTAGATGCCCTTGGAGCTGCCATTAAGGTATATTTTCATTGTTGACTTCTGTCTACTCTTCTGTGTCATTTGTTAACATTAATAACCAAATTTTGTACTTATTGTTTATACTTTACAATGCATCATGACCATATAACCTTGGCTTGTTTAACCAAAACAATATCCAATAAACATCAGTATGATGTTCATTTCTGATTGAGCGAAGTTAAGTTTGGCAACTGAAATCCCTGAAGCCTATATTTGTCTCTTTCAATTTTGAAATCTTTGCTAGGCCATCACATATCAGAGGGGTAAAATGGGAAATTTCCTAATGACAGTTGGCTTCTTAGGAGGGAGAGGTTACTAGCTCTCTTGTGGAAAAGGCTGGTAGTCTAGTGTTGCTGTGTCCATTATCTTTCTTTGTTATTGTTTTCTTTCTACTTTCATTGAAGAAGTATTAGCTCGTGTTTTTCAATTAATATAAAACTTCAACCTTGATACTTCATTAAATCTTTCAATACTCATGGTTACTACGAACAAGATGAAACTAATAAAACTTCCAACTGTTCTTCCCAAGGCTGCTTTGAGCAGTACAGGCATCCCAAAAGTCCACGTTGCTGCAGAATCATCAGCCAACGAACAACCTGAAGTTGATGTAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCGTCAACAGGCATGGTCACATATGCGGGTTGACAAAACGTGGCGGTGCAGGGCTCGATCCAAGCATAATTCTCGATATGATATCTGTCGGCAAACATGTCAGTGAAGAGTTACTAGACAAGTTGGACTCAGAGATTGTGGCTGCTCAAGCTGATGAAGAAGAATGACAAAGCTTTTAAAGATCCCTTATTGTTGTTCATCTACATCGTAGAATCTTAGATTGATAATCTTCAATGGAATTCTAGTCTAGATGGTATATTGATGATTGTAAGGTAGCCATCTTGTAAAATTGGTAGTGTTTTGGACCTTTGATTCTGTCATGACATTTGTTCAATGACATAAAGTATGTATCTTTGATCAAAGAGTTAAAGGTTTGAATTATTCATATATTGTTGAGCAAAGAAACAGCTTTATCAGGGAATGACGTACGG

mRNA sequence

GAAAAAAAAATCAAATCTCTCCCCTCCTCACTCACGCCTGCAGGCTCCAGAACACCCCCTCGTTTTCTTCAGCCGCCAGACCGCTGCTTGTCGCCGACAGCAGTGGCCGGCACTCCAGTTCCGTCAACCGCCGCCTCCACGAGTACCAGCGCCGCCAATTTTCCCTCCACTCGCTCGTCTTCCGTGCACCAGCGCGCACGCCGGCCGTCGATCCCTGCAGTCGTGCGCCGTCCAGTCGCCAGCCGTCGCATACCTCAACGCCGGTGGTTGGCAGTGCCGTTTTAGCAGCCGTCTCCTCGACGGAGTTTGATTTGGGATTGAAGATTGGGAATAATTTTAGTTGCTATCCGGCGGTGTTTTGGGCGTTCGACGTGGATTCAAGGGGTTAAAGTGTGTTAAGTCTTCTGTTAGCGAATTTAAGGCTGATTCGTCAACTTGTTGGTTGAATTCTTGTTTTGTGGCTTGGAAGTGGTTTTGGTTTAAGCTGCAAATTGGGGTTAATTCAAGAAGAGTTTAATTGCTCGAATTCATTTTGAGATTCTTTTTCCTGAAAAGTAGGAATGGTGGGCCTTTCTATTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTAACTTATCGACCAATTTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACCGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGTAGCCCAATTGCGGAGCCAGCGTTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTCGCTCTCGATCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGCGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATATTGAGGGCCTGGTCATAAGCTCAGAGGGCAATCTTTTAGATGCCCTTGGAGCTGCCATTAAGGCTGCTTTGAGCAGTACAGGCATCCCAAAAGTCCACGTTGCTGCAGAATCATCAGCCAACGAACAACCTGAAGTTGATGTAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCGTCAACAGGCATGGTCACATATGCGGGTTGACAAAACGTGGCGGTGCAGGGCTCGATCCAAGCATAATTCTCGATATGATATCTGTCGGCAAACATGTCAGTGAAGAGTTACTAGACAAGTTGGACTCAGAGATTGTGGCTGCTCAAGCTGATGAAGAAGAATGACAAAGCTTTTAAAGATCCCTTATTGTTGTTCATCTACATCGTAGAATCTTAGATTGATAATCTTCAATGGAATTCTAGTCTAGATGGTATATTGATGATTGTAAGGTAGCCATCTTGTAAAATTGGTAGTGTTTTGGACCTTTGATTCTGTCATGACATTTGTTCAATGACATAAAGTATGTATCTTTGATCAAAGAGTTAAAGGTTTGAATTATTCATATATTGTTGAGCAAAGAAACAGCTTTATCAGGGAATGACGTACGG

Coding sequence (CDS)

ATGGTGGGCCTTTCTATTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTAACTTATCGACCAATTTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACCGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGTAGCCCAATTGCGGAGCCAGCGTTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTCGCTCTCGATCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGCGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATATTGAGGGCCTGGTCATAAGCTCAGAGGGCAATCTTTTAGATGCCCTTGGAGCTGCCATTAAGGCTGCTTTGAGCAGTACAGGCATCCCAAAAGTCCACGTTGCTGCAGAATCATCAGCCAACGAACAACCTGAAGTTGATGTAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCGTCAACAGGCATGGTCACATATGCGGGTTGACAAAACGTGGCGGTGCAGGGCTCGATCCAAGCATAATTCTCGATATGATATCTGTCGGCAAACATGTCAGTGAAGAGTTACTAGACAAGTTGGACTCAGAGATTGTGGCTGCTCAAGCTGATGAAGAAGAATGA

Protein sequence

MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE

Homology

[Close]

BLAST of Bhi07G000278 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-122
Identity = 219/285 (76.84%), Postives = 258/285 (90.53%), Query Frame = 0


Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS+GE+ FI+GGIAQDLRTDGR RLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+GRP+ +QPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL RCLLGGKSG+GA 
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           I+LSSL++ EGK+CWDLYI+GLVISS+GNLLDALGAAIKAAL++T IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYI+DAT EEESQMSSAVSISVNR GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           LTKR G+GLDPS+ILDMISV KHV+E L+ KLDSEI AA+A E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Bhi07G000278 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-122
Identity = 219/285 (76.84%), Postives = 258/285 (90.53%), Query Frame = 0


Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS+GE+ FI+GGIAQDLRTDGR RLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+GRP+ +QPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL RCLLGGKSG+GA 
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           I+LSSL++ EGK+CWDLYI+GLVISS+GNLLDALGAAIKAAL++T IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYI+DAT EEESQMSSAVSISVNR GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           LTKR G+GLDPS+ILDMISV KHV+E L+ KLDSEI AA+A E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Bhi07G000278 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-28
Identity = 83/258 (32.17%), Postives = 136/258 (52.71%), Query Frame = 0


Query: 4   LSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L++ E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   +DR L   +     A+D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESR-----AVD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL +   P   V  ++S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDVSDEEFLQFDTSGVPAIVT--LTKVGKHYIIDATLEEESQMSSAVSISVNRHGH 243
             PE    + E L      +P   T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGAGLDPSIIL 257
           IC + K G  G++ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Bhi07G000278 vs. TAIR 10
Match: AT3G12990.2 (ribonuclease PH45A )

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-28
Identity = 83/258 (32.17%), Postives = 136/258 (52.71%), Query Frame = 0


Query: 4   LSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L++ E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   +DR L   +     A+D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESR-----AVD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL +   P   V  ++S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDVSDEEFLQFDTSGVPAIVT--LTKVGKHYIIDATLEEESQMSSAVSISVNRHGH 243
             PE    + E L      +P   T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGAGLDPSIIL 257
           IC + K G  G++ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Bhi07G000278 vs. TAIR 10
Match: AT3G12990.3 (ribonuclease PH45A )

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-28
Identity = 83/258 (32.17%), Postives = 136/258 (52.71%), Query Frame = 0


Query: 4   LSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L++ E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   +DR L   +     A+D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESR-----AVD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL +   P   V  ++S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDVSDEEFLQFDTSGVPAIVT--LTKVGKHYIIDATLEEESQMSSAVSISVNRHGH 243
             PE    + E L      +P   T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGAGLDPSIIL 257
           IC + K G  G++ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Bhi07G000278 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 3.5e-51
Identity = 110/276 (39.86%), Postives = 168/276 (60.87%), Query Frame = 0


Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS    +
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL +T IP+V V  +   ++
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK 183

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
             E+     + ++     VP IVTL K+G  +++DATL+EE+   +++ +SV   G +  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEI 278
           + K G   LDP  I +M+  GK V + L   L S +
Sbjct: 244 MRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVV 274

[Close]

BLAST of Bhi07G000278 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 5.1e-50
Identity = 110/274 (40.15%), Postives = 165/274 (60.22%), Query Frame = 0


Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS    +
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL +T IP+V V  +    +
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAK 183

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
             E+     + ++     VP IVTL K+G  +++DATL+EE+   +++ +SV   G +  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDS 276
           + K G   LDP  I +M+   K V + L   L S
Sbjct: 244 MRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]

BLAST of Bhi07G000278 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 112/319 (35.11%), Postives = 163/319 (51.10%), Query Frame = 0


Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNPMQPDKGK-VSISVDCSPIAEPAFEGRGGEELSTELSVALDRC--- 120
           KAE+         N  Q D  K +  SV+C P A P FEG+G E L+ ELS  L+R    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 ------------LLGGKSGSGAAI--------------------DLSSLIVVEGKLCWDL 180
                       ++   + +   I                    D +   +V GK  W L
Sbjct: 121 PNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTL 180

Query: 181 YIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTS 240
           Y++ +V+ S+GNL DAL  A ++AL +T IP+V            EV    E+ L     
Sbjct: 181 YVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLSID 240

Query: 241 GVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDM 278
            VP  VTLTK+G  ++ID TL+EE  M++ +++ VN   +IC + K G  GLDP+ I  M
Sbjct: 241 NVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTINQM 300

[Close]

BLAST of Bhi07G000278 vs. ExPASy Swiss-Prot
Match: O26778 (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-35
Identity = 88/257 (34.24%), Postives = 135/257 (52.53%), Query Frame = 0


Query: 21  RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKLCWDLYI 140
            +  P+A P FE    +E S ELS  +DRC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESR-----MIDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGV 200
           +  +I  +GNL DA   A  AAL  T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDMIS 260
             + T  K+G   ++D +LEEE  +++ +SI V   G IC + K G   L    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEELLDKLDSEI 278
           +      +L++ LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]

BLAST of Bhi07G000278 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-34
Identity = 85/249 (34.14%), Postives = 137/249 (55.02%), Query Frame = 0


Query: 21  RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP P  P++G ++++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKLCWDLYI 140
            +  P+A+P+FE    +E + ELS  +DR +          IDL  L + EG+ CW  ++
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGI-----RESEMIDLEELCIEEGEHCWVTFV 142

Query: 141 EGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGV 200
           +  V+  +GNL DA      +ALS T +PK  V  +       EV+V +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDF 202

Query: 201 PAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDMIS 260
           P  VT+ KVG++ ++D  LEEE  M + ++++V   G +C + K         ++ D I 
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLEDAID 259

Query: 261 VGKHVSEEL 270
           +    +EE+
Sbjct: 263 LATKKAEEV 259

[Close]

BLAST of Bhi07G000278 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.8e-144
Identity = 267/286 (93.36%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+AL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVHVAAE+  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSIS++RHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGKHVSEELL+KLDSEIVAA+ADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Bhi07G000278 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.9e-143
Identity = 265/286 (92.66%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVH+AAE+S N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSIS+NRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGK+VSEELL+KLDSEIVAA+ DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Bhi07G000278 vs. ExPASy TrEMBL
Match: A0A5A7SRK6 (Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001860 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.9e-143
Identity = 265/286 (92.66%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVH+AAE+S N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSIS+NRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGK+VSEELL+KLDSEIVAA+ DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Bhi07G000278 vs. ExPASy TrEMBL
Match: A0A6J1EQ99 (exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.1e-140
Identity = 257/286 (89.86%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS+GEKLFIQGGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVAL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALS+TGIPKV+V+ E+SAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYI+DATLEEESQMSSA+SISVNRHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGGAG+DPS+ILDMISVGKHVSE+LL+KLDSEI AA+ADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Bhi07G000278 vs. ExPASy TrEMBL
Match: A0A6J1C1R4 (exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.0e-138
Identity = 255/286 (89.16%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSIGEK FIQGGIAQDLR+DGR RLTYRPISVETDVISQANGSARV+MGGTEVIA V
Sbjct: 1   MVGLSIGEKQFIQGGIAQDLRSDGRTRLTYRPISVETDVISQANGSARVKMGGTEVIAAV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL RCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGK+CWDLYIEGLV+SS GNLLD LGAAIKAALS+TGIPKV+VAAE+SA+
Sbjct: 121 GIDLSSLIVVEGKICWDLYIEGLVVSSNGNLLDTLGAAIKAALSNTGIPKVNVAAEASAD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           +QPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYI+DATLEEESQM+SA+SIS+NRHGHIC
Sbjct: 181 DQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMNSAISISINRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           G+TKRGGAG+DPSIILDMISVGKHVSE+LL+KLDSEI AA+ADEEE
Sbjct: 241 GVTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

The following BLAST results are available for this feature:

BLAST of Bhi07G000278 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07750.1	1.3e-122	76.84	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	1.3e-122	76.84	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	1.1e-28	32.17	ribonuclease PH45A	[more]
AT3G12990.2	1.1e-28	32.17	ribonuclease PH45A	[more]
AT3G12990.3	1.1e-28	32.17	ribonuclease PH45A	[more]

BLAST of Bhi07G000278 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15024	3.5e-51	39.86	Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3	[more]
Q9D0M0	5.1e-50	40.15	Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2	[more]
Q54VM4	1.3e-42	35.11	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ...	[more]
O26778	6.0e-35	34.24	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]
Q8TYC2	3.0e-34	34.14	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Bhi07G000278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU91	2.8e-144	93.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1	[more]
A0A1S3B3T5	6.9e-143	92.66	exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=...	[more]
A0A5A7SRK6	6.9e-143	92.66	Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1EQ99	7.1e-140	89.86	exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE...	[more]
A0A6J1C1R4	1.0e-138	89.16	exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..169 e-value: 8.9E-28 score: 97.4
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 200..263 e-value: 5.3E-10 score: 39.2
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 3..286 e-value: 6.4E-81 score: 273.9
None	No IPR available	PANTHER	PTHR11097:SF30	BNAA05G29900D PROTEIN	coord: 1..284
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 1..284
None	No IPR available	CDD	cd11367	RNase_PH_RRP42	coord: 4..277 e-value: 1.20637E-122 score: 349.587
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 4..223
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 196..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000278	Bhi07M000278	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)