Bhi07G000168 (gene) Wax gourd (B227) v1

Overview


Name	Bhi07G000168
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Splicing factor subunit
Location	chr7: 9820286 .. 9821972 (+)
RNA-Seq Expression	Bhi07G000168
Synteny	Bhi07G000168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATATTTCATTTGACTTCTCACAAAGGCCATCCCTTACCCGAAAAAAAACGTTCTTTTGCCCTCTCCTCTTTTATGAAACCCTAAATTGCAGTGGACTGTGCAGGACCTTTTGCTCCCGTACCTTCTTTGCTTCGTCGCGTCTATTGCAATTCGCGAGCGAAACATGCAGGTAAGAACTACACATGAACCTCTTATCTATTGTTTACTATACTTCTTTGTTCCCAATTTTGGGTTGTGTTTCACTTACTTGACTAGTAATTAGAAAGCCCTGCCACTGATTCCAATTTGATTCATTATTTTTTTATTTCGGCTGATTAGAACAATATTATCTTGAGTCCTTAATTACTATTCAGTTGGTTAGTGTCATAGGTGGATGCCAAACCTCTTAATCAGCAATGAGCAATCCATCTTTGAAATTTGAGATTGCTTGTGGATTCCTGTCATTGCTCGAGGTTGCTTTAGATGGGCCGGGCGCTAATGTTGGTTTCTCATATTTGATTCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGCCATGCCGACTTAAACAGATTGTTAGTTTTCTATTTCTTTTGAGTCTTGATCTTATATTGCGTTACGTATTAGTTTTTATGTCTGAATTCACATCTTCGTGCTTACAGTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGGCATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGGTTGATATGTTTGTCTTTTTGTTTTCTTATTCATATTTTTCCTAGTGAGTTTCCTCGTTTCATTCTTAGTTTTTTTCTTTCATAACCACTTCCTCAGTTAAAAGAATTATCTTAGACGTGTCTTTGTTTCTTCTAGCGTATCCCTTGTAGTTGTAGTTAATCCTGATCCTATCTGGCTGTTTCTGCTTATCATTCTTTTGTACATCTGAATGTAATGATCAATACCATCTGCTGCACTGTGTTAACTTGCCTTCTTCCCATGAACAGGGTCTCCAGTCCTAGTTATATGATTATTGGGTAATTGTTCCTTTTATACATTTCTCTGCTTTTGGTTTTTCATCCCATCCATGTGTATTGTATTCTACACCAGAATAGTGATTCAACTACGTTCACTGTGTGCTGTAATATAAATTTGGACGTGTGTTGCTTTTAAGTTTCGAAATGTGGGGTTATACGTATACCCATCGTTTACCGAGTGTTTTCATTCATAGCAAGGGACGGCAAAATTTCATCATATTTCCTCTGGATATCGTTTTGGACATACTTACGGAATGGTTTGTTTTCCTTTTTTTGGGCAGAAAATGCTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATTATTAAGTAGTTTAAATTGTAGTTAAGATTTCAAATGACAAGACATTGTAGGGTTAAACTATACTAGTTCCTCGTCCTTTTTGTTATAAAAACAAGGTCCATTTCATTCATGGTTCAAAAATTGTTTGTAAACTATAAATACATATAATAGGTGTTGGCCCTGTATTATTTTCATGGACTAAAATAATTAAGGAATGGAAATTTTCATTAGTTAATTTGTTTGAATGAATGGGGCCTTCCACAATTCAC

mRNA sequence

CTCATATTTCATTTGACTTCTCACAAAGGCCATCCCTTACCCGAAAAAAAACGTTCTTTTGCCCTCTCCTCTTTTATGAAACCCTAAATTGCAGTGGACTGTGCAGGACCTTTTGCTCCCGTACCTTCTTTGCTTCGTCGCGTCTATTGCAATTCGCGAGCGAAACATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGCCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGGCATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGAAAATGCTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATTATTAAGTAGTTTAAATTGTAGTTAAGATTTCAAATGACAAGACATTGTAGGGTTAAACTATACTAGTTCCTCGTCCTTTTTGTTATAAAAACAAGGTCCATTTCATTCATGGTTCAAAAATTGTTTGTAAACTATAAATACATATAATAGGTGTTGGCCCTGTATTATTTTCATGGACTAAAATAATTAAGGAATGGAAATTTTCATTAGTTAATTTGTTTGAATGAATGGGGCCTTCCACAATTCAC

Coding sequence (CDS)

ATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGCCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGGCATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGAAAATGCTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Homology

[Close]

BLAST of Bhi07G000168 vs. TAIR 10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Bhi07G000168 vs. TAIR 10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-45
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy Swiss-Prot
Match: Q9LW64 (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy Swiss-Prot
Match: P58728 (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy Swiss-Prot
Match: Q9VHI4 (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 RERYNFMQKMLLPCGLPPEREDD 88
          R R+N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]

BLAST of Bhi07G000168 vs. ExPASy Swiss-Prot
Match: Q56K13 (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Bhi07G000168 vs. ExPASy Swiss-Prot
Match: Q9BWJ5 (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Bhi07G000168 vs. ExPASy TrEMBL
Match: A0A6J1IBJ4 (Splicing factor subunit OS=Cucurbita maxima OX=3661 GN=LOC111473181 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy TrEMBL
Match: A0A218VSR0 (Splicing factor subunit OS=Punica granatum OX=22663 GN=LOC116191992 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy TrEMBL
Match: A0A6J1EJ56 (Splicing factor subunit OS=Cucurbita moschata OX=3662 GN=LOC111433082 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy TrEMBL
Match: A0A6P4A3S7 (Splicing factor subunit OS=Ziziphus jujuba OX=326968 GN=LOC107422867 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Bhi07G000168 vs. ExPASy TrEMBL
Match: A0A5A7UDP6 (Splicing factor subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002040 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.0e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

The following BLAST results are available for this feature:

BLAST of Bhi07G000168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23325.1	1.5e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT4G14342.1	1.5e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]

BLAST of Bhi07G000168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW64	2.2e-44	93.10	Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P...	[more]
P58728	2.2e-44	93.10	Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P...	[more]
Q9VHI4	2.2e-28	66.27	Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV...	[more]
Q56K13	9.1e-27	60.71	Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1	[more]
Q9BWJ5	9.1e-27	60.71	Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1	[more]

BLAST of Bhi07G000168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBJ4	3.8e-44	100.00	Splicing factor subunit OS=Cucurbita maxima OX=3661 GN=LOC111473181 PE=3 SV=1	[more]
A0A218VSR0	3.8e-44	100.00	Splicing factor subunit OS=Punica granatum OX=22663 GN=LOC116191992 PE=3 SV=1	[more]
A0A6J1EJ56	3.8e-44	100.00	Splicing factor subunit OS=Cucurbita moschata OX=3662 GN=LOC111433082 PE=3 SV=1	[more]
A0A6P4A3S7	3.8e-44	100.00	Splicing factor subunit OS=Ziziphus jujuba OX=326968 GN=LOC107422867 PE=3 SV=1	[more]
A0A5A7UDP6	5.0e-44	98.85	Splicing factor subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017089	Splicing factor 3B, subunit 5	PIRSF	PIRSF037010	SF3B5	coord: 1..87 e-value: 1.1E-39 score: 132.4
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 5..82 e-value: 1.3E-36 score: 124.5
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PANTHER	PTHR20978	SPLICING FACTOR 3B SUBUNIT 5	coord: 2..74
None	No IPR available	PANTHER	PTHR20978:SF3	SPLICING FACTOR SUBUNIT	coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000168	Bhi07M000168	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005686	U2 snRNP