Bhi07G000127 (gene) Wax gourd (B227) v1

Overview


Name	Bhi07G000127
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA repair protein XRCC2 homolog
Location	chr7: 7577753 .. 7578258 (-)
RNA-Seq Expression	Bhi07G000127
Synteny	Bhi07G000127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGCCAGAGTTCTCAAAGAACGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGTCCAATTATCAAGTTCAATCTCTCCATTTGAACTTCTTGCATGATTTATATCCGATATATCGATAAAAAATTGATGGTGATTTACCTCGAAAGCATTTGAGAACAATTTGTGTGCCATTAAAGTTAGACCGCTTTTGTCTTACCAAAAGAAAAGTAGACTGCTTCTGTGAGCAGGCTGCTGTTAATTGCATTCTTCCAAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTACCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAACG

mRNA sequence

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGCCAGAGTTCTCAAAGAACGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGCAGGCTGCTGTTAATTGCATTCTTCCAAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTACCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAACG

Coding sequence (CDS)

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGCCAGAGTTCTCAAAGAACGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGCAGGCTGCTGTTAATTGCATTCTTCCAAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTACCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAACG

Protein sequence

MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISN

Homology

[Close]

BLAST of Bhi07G000127 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-35
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6   WIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQAAVNC 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILI QAA++C
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI-QAAISC 68

Query: 66  ILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEA 109
           ILPK WNGI YGGL   V+F+DLDCR D+ RL Q+LK R+L+A
Sbjct: 69  ILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA 110

[Close]

BLAST of Bhi07G000127 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-35
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6   WIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQAAVNC 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILI QAA++C
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI-QAAISC 68

Query: 66  ILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEA 109
           ILPK WNGI YGGL   V+F+DLDCR D+ RL Q+LK R+L+A
Sbjct: 69  ILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA 110

[Close]

BLAST of Bhi07G000127 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-35
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6   WIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQAAVNC 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILI QAA++C
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI-QAAISC 68

Query: 66  ILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEA 109
           ILPK WNGI YGGL   V+F+DLDCR D+ RL Q+LK R+L+A
Sbjct: 69  ILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA 110

[Close]

BLAST of Bhi07G000127 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-34
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6   WIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQAAVNC 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILI QAA++C
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI-QAAISC 68

Query: 66  ILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEA 109
           ILPK WNGI YGGL   V+F+DLDCR D+ RL Q+LK R+L+A
Sbjct: 69  ILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA 110

[Close]

BLAST of Bhi07G000127 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 11  ESASEMLARVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQQAAVNC 70
           ES +E+LAR L+ R+SL  + P L      P+  G+++E  GP G+ KT++L    A  C
Sbjct: 9   ESGTELLAR-LEGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTA-RC 68

Query: 71  ILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEA 109
           ILPK       GGLE  V+FID D   D+ RL  +L+ R+ ++
Sbjct: 69  ILPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQS 103

[Close]

BLAST of Bhi07G000127 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-06
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 11  ESASEMLARVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQQAAVNC 70
           ES +E+LAR L+ R+SL  + P L      P+  G++ E  GP G+ KT++L    A  C
Sbjct: 9   ESGTELLAR-LEGRSSLKELEPNLFADEDSPVH-GDIFEFHGPEGTGKTEMLYHLTA-RC 68

Query: 71  ILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEA 109
           ILPK       GGL+  V+FID D   D+ RL  VL+ R+ ++
Sbjct: 69  ILPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQS 103

[Close]

BLAST of Bhi07G000127 vs. ExPASy TrEMBL
Match: A0A5D3CVL4 (DNA repair protein XRCC2-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00950 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 104/111 (93.69%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQ 60
           M LSQWIDGDESASEML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI Q
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI-Q 60

Query: 61  AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISN 112
           AAVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]

BLAST of Bhi07G000127 vs. ExPASy TrEMBL
Match: A0A1S3C491 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 104/111 (93.69%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQ 60
           M LSQWIDGDESASEML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI Q
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI-Q 60

Query: 61  AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISN 112
           AAVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]

BLAST of Bhi07G000127 vs. ExPASy TrEMBL
Match: A0A1S3C3R7 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 104/111 (93.69%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQ 60
           M LSQWIDGDESASEML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI Q
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI-Q 60

Query: 61  AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISN 112
           AAVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]

BLAST of Bhi07G000127 vs. ExPASy TrEMBL
Match: A0A1S3C456 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 104/111 (93.69%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQ 60
           M LSQWIDGDESASEML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI Q
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILI-Q 60

Query: 61  AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISN 112
           AAVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]

BLAST of Bhi07G000127 vs. ExPASy TrEMBL
Match: A0A6J1KC81 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.7e-47
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQQ 60
           MAL QWIDGDESA+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILI Q
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-Q 60

Query: 61  AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISN 112
           AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDI+RL QVLKLRILE   N
Sbjct: 61  AAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGN 110

The following BLAST results are available for this feature:

BLAST of Bhi07G000127 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64520.2	4.1e-35	67.96	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.1	4.1e-35	67.96	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.3	4.1e-35	67.96	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

BLAST of Bhi07G000127 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	5.7e-34	67.96	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
O43543	6.0e-07	39.81	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]
Q9CX47	3.0e-06	39.81	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]

BLAST of Bhi07G000127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVL4	8.6e-49	93.69	DNA repair protein XRCC2-like protein isoform X3 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3C491	8.6e-49	93.69	DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C3R7	8.6e-49	93.69	DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C456	8.6e-49	93.69	DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1KC81	4.7e-47	90.09	DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 17..110 e-value: 1.7E-13 score: 52.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..102
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 38..100 e-value: 7.4E-5 score: 22.1
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 4..109
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 17..111 score: 11.340628

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000127	Bhi07M000127	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding