Bhi07G000061 (gene) Wax gourd (B227) v1

Overview


Name	Bhi07G000061
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	tapetum determinant 1
Location	chr7: 3884740 .. 3886004 (-)
RNA-Seq Expression	Bhi07G000061
Synteny	Bhi07G000061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGGCGGCTGCTGCTTTCAGAGCTTCAATTTTATTCCATCTCCTTTTATTGTCATCCTTTCATTTTACTGGTACTTCTATCTTTTCTTATTTTAATCCAATTTTACAATTTAGAAATTTGAATTTTATATCCAATACATGAAACCGTAGTTAAGCTTTTAAATTAACTTCCGTATAGTTAAGGGTGTTTATGGGTTTGGTTTGGATTGAGTTGAAAAACTTTTTAGATCCAATCCAATTATTCGGTTGTAAATTTCTTCAATTTAAAAAGCAACCCAACCCAACTATGAAATATTTGGATTGAGTTGGTTCGGATTAATCGGATCATTTATTAAAAATTTTGTTCTAAAAAGAAACAAAACATAAATACATAAAAATCTAATTTAATAATTTTCATATATTGGATTAAGATTAACAACTCAATTTCAATTTATATAGTGAAAATTTTCTTTCTAAAGTGTAAAGAAACTACTTTGAAGAGTTGTCGAAGAATAAATAATTCAAAAAATATTAAAATTAAATAAAATTAAAATCAATATATGTATAAATAATTGTGTTATAAGTAATAAAAAAATATTTTAAAGTTAATAATAAATTCGGATTGGTTTGTGTTATATTAGGTGAACCCATGAACGAACCCAACCCATAAAATTTTCATTTATTTGAACTCAATCCAATCAAATGAGTTGATAACCAAACCCAAATTGCACGAGTTGGGTTGGATTATTCGGGTTTTTCGAACACCCCTACGTATAGTTAAGGACTTGACAATATGTAAAGTTGAGAGATATTATCAAACCTTTTGAAAGTTTACTCGTAATTTTTCTTTTTTAATAATATATAGAGTGAGTGAAAAATTGAACCTCTCACCTCGTGGTCAATAATAAAAACTTAATGTACTAATTAACTATGGGAATGATTTAATTAGGTGGAACATTAGAGAGAAAATGTGAAGCAAATTCGATAGCAATAAGTCAAGGAGAAGGAGGGCCGCAGTTCAATGGAATCCCGACGTATACGGTGGAGATAACAAACCAATGTGGGAAAAATTGCAGCATCTACGATCTCCATTTGAAATGTGGATCTTTTAGCTCAGCAAACTTAATAGACCCTCACGTCTTCAAGCGCATTGCGGTGGGTGATTGCCTTGTCAACAATGGAAGACCCATCCCTCCCGACACCACCATTTCCTTTAAATATGCAACTACCTTCATGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCGGTTCACAATAA

mRNA sequence

ATGGCTAAGGCGGCTGCTGCTTTCAGAGCTTCAATTTTATTCCATCTCCTTTTATTGTCATCCTTTCATTTTACTGGTGGAACATTAGAGAGAAAATGTGAAGCAAATTCGATAGCAATAAGTCAAGGAGAAGGAGGGCCGCAGTTCAATGGAATCCCGACGTATACGGTGGAGATAACAAACCAATGTGGGAAAAATTGCAGCATCTACGATCTCCATTTGAAATGTGGATCTTTTAGCTCAGCAAACTTAATAGACCCTCACGTCTTCAAGCGCATTGCGGTGGGTGATTGCCTTGTCAACAATGGAAGACCCATCCCTCCCGACACCACCATTTCCTTTAAATATGCAACTACCTTCATGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCGGTTCACAATAA

Coding sequence (CDS)

ATGGCTAAGGCGGCTGCTGCTTTCAGAGCTTCAATTTTATTCCATCTCCTTTTATTGTCATCCTTTCATTTTACTGGTGGAACATTAGAGAGAAAATGTGAAGCAAATTCGATAGCAATAAGTCAAGGAGAAGGAGGGCCGCAGTTCAATGGAATCCCGACGTATACGGTGGAGATAACAAACCAATGTGGGAAAAATTGCAGCATCTACGATCTCCATTTGAAATGTGGATCTTTTAGCTCAGCAAACTTAATAGACCCTCACGTCTTCAAGCGCATTGCGGTGGGTGATTGCCTTGTCAACAATGGAAGACCCATCCCTCCCGACACCACCATTTCCTTTAAATATGCAACTACCTTCATGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCGGTTCACAATAA

Protein sequence

MAKAAAAFRASILFHLLLLSSFHFTGGTLERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVFKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKCIGSQ

Homology

[Close]

BLAST of Bhi07G000061 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 32  KCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVFK 91
           KC++  I ++Q    P  NGIP Y VEITNQC   C I  +H+ CG FSSA LI+P VFK
Sbjct: 76  KCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFK 135

Query: 92  RIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKC 132
           RI   DCLVNNG+P+P  +T+SF YA TF + LSV+ + C
Sbjct: 136 RIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of Bhi07G000061 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-25
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 9   RASILFHLLLLSSFHFTGGTLERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCS 68
           R ++   LLL          + + C  + I + QG   P  +G+P+YTVEI N C  +C+
Sbjct: 56  RTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCN 115

Query: 69  IYDLHLKCGSFSSANLIDPHVFKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSS 128
           I ++H+ CG FSS  L++P VF+R+   DCLVN+G+P+ P  ++SF+YA +F +PLSV+S
Sbjct: 116 IAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

Query: 129 LKC 132
           + C
Sbjct: 176 VSC 178

[Close]

BLAST of Bhi07G000061 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-08
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 55  YTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVFKRI---AVGDCLVNNGRPIPPDTT 114
           + VE+ N+C   C I +L LKC  F   +L+DP  F R+   + G+C+VN+G P+ P  T
Sbjct: 48  FRVEVMNKC-PMCPIINLRLKCQGFPQ-SLVDP-TFLRVLSSSAGNCVVNDGLPLSPMQT 107

Query: 115 ISFKYATTFMFPL 125
           +SF Y+ T  F L
Sbjct: 108 LSFNYSNTHQFAL 117

[Close]

BLAST of Bhi07G000061 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-25
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 32  KCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVFK 91
           KC++  I ++Q    P  NGIP Y VEITNQC   C I  +H+ CG FSSA LI+P VFK
Sbjct: 76  KCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFK 135

Query: 92  RIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKC 132
           RI   DCLVNNG+P+P  +T+SF YA TF + LSV+ + C
Sbjct: 136 RIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of Bhi07G000061 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 9   RASILFHLLLLSSFHFTGGTLERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCS 68
           R ++   LLL          + + C  + I + QG   P  +G+P+YTVEI N C  +C+
Sbjct: 56  RTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCN 115

Query: 69  IYDLHLKCGSFSSANLIDPHVFKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSS 128
           I ++H+ CG FSS  L++P VF+R+   DCLVN+G+P+ P  ++SF+YA +F +PLSV+S
Sbjct: 116 IAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

Query: 129 LKC 132
           + C
Sbjct: 176 VSC 178

[Close]

BLAST of Bhi07G000061 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.9e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 35  ANSIAISQGEGGPQFNGIPTYTVEITNQCG------KNCSIYDLHLKCGSFSSANLIDPH 94
           A+ IAI QG   P  +G+P YTV++ N+C       + C+I  +H++CG FSS +L+DP 
Sbjct: 117 ADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPR 176

Query: 95  VFKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKCI 133
           VF+R+   DCL+N+GRP+    T+SF+Y  +F + LSVS   C+
Sbjct: 177 VFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATCV 220

[Close]

BLAST of Bhi07G000061 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-20
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 33  CEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVFKR 92
           C   ++ + Q       +GIPTY+VEI N C   C++YD+H+ CG F+SA L+DP  F+R
Sbjct: 71  CSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVDPSQFQR 130

Query: 93  IAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKC 132
           I   DCLV  G  + P   +SF+Y+ +F +PL+V+++ C
Sbjct: 131 IGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of Bhi07G000061 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 55  YTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVFKRI---AVGDCLVNNGRPIPPDTT 114
           + VE+ N+C   C I +L LKC  F   +L+DP  F R+   + G+C+VN+G P+ P  T
Sbjct: 48  FRVEVMNKC-PMCPIINLRLKCQGFPQ-SLVDP-TFLRVLSSSAGNCVVNDGLPLSPMQT 107

Query: 115 ISFKYATTFMFPL 125
           +SF Y+ T  F L
Sbjct: 108 LSFNYSNTHQFAL 117

[Close]

BLAST of Bhi07G000061 vs. ExPASy TrEMBL
Match: A0A4D9C509 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_003160 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 56/101 (55.45%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 31  RKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHVF 90
           +KC  + IAISQ   GP  NGIPTYTVEI+N C   C+I ++H++CG FSSA L++PH+F
Sbjct: 54  KKCSKSDIAISQSATGPLPNGIPTYTVEISNTCISGCNISNIHIRCGWFSSARLVNPHLF 113

Query: 91  KRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKC 132
           KR+   DCL+N+G+P+    T+SF YA TF +PLSVSS+ C
Sbjct: 114 KRLRFNDCLLNDGKPLRKGRTLSFMYANTFRYPLSVSSVTC 154

[Close]

BLAST of Bhi07G000061 vs. ExPASy TrEMBL
Match: A0A2Z6M9Q9 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_317810 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 30  ERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHV 89
           ++KC  + + I+QG   P  NGIPTYTVEI N C   C I  +HL+CG FSSA LI+P +
Sbjct: 75  DQKCSKSDVVINQGSTAPLPNGIPTYTVEIMNMCVSGCDISAIHLRCGWFSSARLINPKL 134

Query: 90  FKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKCI 133
           FKR+   DCLVNNGRP+    T+SF+YA T+++PLSVSS+ C+
Sbjct: 135 FKRLRYNDCLVNNGRPLVNGGTVSFQYANTYLYPLSVSSVVCV 177

[Close]

BLAST of Bhi07G000061 vs. ExPASy TrEMBL
Match: A0A445C1Y8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041198 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 30  ERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHV 89
           + KC  + I ISQG   P  +GIPTYTVEI N C   C I  +HL CG FSSA LI+P V
Sbjct: 94  DNKCSKSDIVISQGPTAPLPSGIPTYTVEIMNMCVSGCDISRIHLTCGWFSSARLINPKV 153

Query: 90  FKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKCI 133
           FKR+   DCLVN+GRP+    TISF+YA TF++PLSVSS+ CI
Sbjct: 154 FKRLRYNDCLVNDGRPLLNGATISFQYANTFLYPLSVSSVSCI 196

[Close]

BLAST of Bhi07G000061 vs. ExPASy TrEMBL
Match: A0A444XWG4 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089023 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 30  ERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHV 89
           + KC  + I ISQG   P  +GIPTYTVEI N C   C I  +HL CG FSSA LI+P V
Sbjct: 65  DNKCSKSDIVISQGPTAPLPSGIPTYTVEIMNMCVSGCDISRIHLTCGWFSSARLINPKV 124

Query: 90  FKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKCI 133
           FKR+   DCLVN+GRP+    TISF+YA TF++PLSVSS+ CI
Sbjct: 125 FKRLRYNDCLVNDGRPLLNGATISFQYANTFLYPLSVSSVSCI 167

[Close]

BLAST of Bhi07G000061 vs. ExPASy TrEMBL
Match: A0A6P4BZ54 (TPD1 protein homolog 1 OS=Arachis duranensis OX=130453 GN=LOC107463639 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 30  ERKCEANSIAISQGEGGPQFNGIPTYTVEITNQCGKNCSIYDLHLKCGSFSSANLIDPHV 89
           + KC  + I ISQG   P  +GIPTYTVEI N C   C I  +HL CG FSSA LI+P V
Sbjct: 94  DNKCSKSDIVISQGPTAPLPSGIPTYTVEIMNMCVSGCDISRIHLTCGWFSSARLINPKV 153

Query: 90  FKRIAVGDCLVNNGRPIPPDTTISFKYATTFMFPLSVSSLKCI 133
           FKR+   DCLVN+GRP+    TISF+YA TF++PLSVSS+ CI
Sbjct: 154 FKRLRYNDCLVNDGRPLLNGATISFQYANTFLYPLSVSSVSCI 196

The following BLAST results are available for this feature:

BLAST of Bhi07G000061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24972.1	1.1e-26	54.00	tapetum determinant 1	[more]
AT1G32583.1	2.7e-25	40.65	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G05835.1	2.3e-08	41.10	PHD finger protein	[more]

BLAST of Bhi07G000061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6TLJ2	1.6e-25	54.00	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q1G3T1	3.8e-24	40.65	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q2QR54	8.9e-21	43.27	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
Q8S6P9	5.7e-20	41.41	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
A8MS78	3.3e-07	41.10	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Bhi07G000061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D9C509	1.1e-26	55.45	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_003160 PE=4 SV=1	[more]
A0A2Z6M9Q9	1.9e-26	54.37	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_317810 PE=4 SV...	[more]
A0A445C1Y8	1.9e-26	58.25	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041198 PE=4 SV=1	[more]
A0A444XWG4	1.9e-26	58.25	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089023 PE=4 SV=1	[more]
A0A6P4BZ54	1.9e-26	58.25	TPD1 protein homolog 1 OS=Arachis duranensis OX=130453 GN=LOC107463639 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 28..131
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 28..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000061	Bhi07M000061	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination
cellular_component	GO:0016020	membrane