Bhi06G001735 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001735
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr6: 55993389 .. 55998100 (-)
RNA-Seq Expression	Bhi06G001735
Synteny	Bhi06G001735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTAAAAAAAAAAAACTCAAAATAAATAAGTAAAACTCCAAAAACCAGTTCGACAAAACAGAAACCCCCCCCCCACGCCCCATCTCCTCTTCTCCGACCCCGCTGCTGACAACACCCACGCCGCCGCCTCCCACCTTGTTTTAAGGTTTCAACTCTTGTTTTTTTTTTTTTTTTTTTGTTCTTTAGCATTTGGATTTATTTACTTGAAATTTGTTAAACTTTTGGTTTCTTAAAGTTGTAAACAAAGGAGGGGAATGGGTATATTTACTTTAAATTTGGATTGATGGCAAACTTGGTTGTTGAAGGTGTATTGAGGATAACGAGGTCAAATTTACTTGTTGAAGGTGTGTTGAGGATATTGAATGCAAAGTTAAGTTGTTGAAGGTTCTAAACAAAGGAGGGGAATAAGGGCAAACTTAGATAATTTGATTGTTTGTGGTTTAGTTTGTAATGTTTGGTCTTCTCAATTTTGCTTTTATGCGTGTGCTATTTGGTCTCCATGGAGTTGTCTTAAAATAATTTGATTGTATTACTGTTTAGTTTGTTTGGAGCTTGATGTTTTCATACAAAGTAAATAGCTCTTTGGCTTATGAATATGTGTATTAGTTTTTCTCTACTTCAAAGCATCGGTTCTTTGAATTTTCAAGAACTTGATTAGTTTGCTTTCACGCAAAGTATATATATATATATTTTACTTATGAATGTGTTTGGTTTTAGGTTTGATTATGCATCTCTTTAAATGCTAGCCAACATCTGCCATGCACGTGTTAATTAACGTTTATTGTTTTTACCTTCTTCAAGCTCTCTTTCTTCTCCGGCCGCTGCCAATTTGTCTCCTCCTTGTTTCAGTTGCCATTTCAATGGAGGGGCTCAAGGTTTCGGATGCTAATTTGGTTGTTTACGTTCACCCATCTAAAAGTAAGAAGGTTTCACAAGCCGTGCTTCGAGAGCTTGGCACTATGCTGCTAAAGTAAGTCGAATTTCTCTAGGCTTCCAACAATTCTAATGTCTAGTCTTTTGCAATCACAACTTTCTCCAGTTATTGATAGTCTTGTTATGTTTGAATTATTTTGTTGAACATCTTAATTGCGTGTACTATCTGTTAATGGCAGAGTTAGACTAGTACAAACTTGAATTTAGCCACACTTTACCATGAATTTAGCTTCAATTTTAGCTTTTTTCTTTTCTTTTTCTTTTTTTCTTTTTTTTCTTTTTTAATTATGATAAAATCAATTGCTTTCATTGAAAAAAGTGAAAGAATACACGGGCATACAAAAAAATCCAACCCACAAAACACCACCCCCTACAGAAATGGGCTCCAACAATGCATAATAACTCCTATAGAATAGTTACAAAAGGTCTTCAAAACCGAAGCCCACTAAGAAACATGAAAGTGGACAAAGGACCAAACCTCACTGAGGTCCTTATCCACCCCTCTAAAAATCCTACCATTGCGTTCAACCCCACAAAACTCACGATCGCACCTGCCCCAGCTAACCACAAAAAAACTCCCATTCTCCCACGAGGCAGATTGAGAAGAAACTCCTCAATCATAGCACTAGTGTCCTTCTGACGAACAAACAAAAAGCCAAACGTCTTTGAGGCTTAGAATTAGAATTAGATGATTACAGTTTCTTTCCCCATTGTTATCAAGTGGATTTTTTTCATTCTCTTTGAACTCAAAGGCGCGAAGTTTAAACTTTTAGTGATTGTCATCACTGCTTCTTGTGCTTCCATTTAATCAGATGTTTTTCATTCTCTTTGAACTCAAAGGCACAAAGTTTAAACTTCTAGTGATTGTCATCACTGCTTCTTTTGTTCCCATTTAATCAGTATTCAAGTTCATTGATGGGGTAGATACCTGTGAACTTCGATCATTAACTACATTTTTGTATTGTGTTTCTCGTGTAGATTTGATGAAAAGTTTGAAGGCGTGCTATTGGCTTATGAGGCCAACATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACCATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCATTGATTCTCATTGTATGTTTAGGAGTTTCATTTATGATTTGGTCTCTCCATTGTTGGAAAACAACACATCTAGAATTAAGTTTGTTAATTGCTAGATAGACATTATTGAATAGTACTTTTTGATGAGAGATATGAACAAGAGGTTTCTGAAAAACTAGTCTTTTCTGAATTATATGAAGCCAGTAACGAGTGCATGGGTATTTGAGAGTATTCGGGAAAAAGCAGAGTATTTGATGGAAGAATGAGAAATCCTTTTGAACAACCAGTTATAATAGGAAAGCTTTATTTCTTGAAATTAATTCGTCAGGTTGATGATAAAATACACGGACGTTCAAGTGAACATTATGCACTTGTTACACAATAATCTTACTTTGATTCAGAGTTTCTATTATTTCTTTAAATGAAATTTAGCGATTCAATTTTGAAAATTGTATTCAGATAGATATACAAAAGCCTATTATATTTCTGCATCTATTAGAATATTTTATTGATTCATTTCTAAATCTAATATCTATCAGAATCTAAGACAATGCCGTATGTGTATTTCTCTGTCTTCATAAACCATATAAGGTACTGGCAATATAGGAAAAATTTAGTATTAACGAATTTTCAATTGTGGATACAATGGTAGACATATTAAATTGACTTATAGGATGCCAAATTTTTTATGCCTCTTTTTCGTGCTTTGATGATAGTTTTGTTATCATTTCAGAGGGAAAGGTGGTGAAGCTAAGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTTCTTCTGGTGTAATAACCGATGAAGATATTCGCGACGAATTCAAGCATAGAACAGTATGTTTTGTGCATTTTACTTGTGAATTCATACCTTTCCCTTTGTTAGACATATAAGAATCAGAAGGAAGTTTTTATGTTCTCTTCTTGTCCTGGTTGTATTGTGCATTGATTTTGACATAGAAACATGGAGAAGAAATGTTTGTCAGCAGAGTTCACAAGCACCATGTAATAAAAGTTGGGACAATGATACGATTTTTGGTGAAGAGGTCAGATTTCTTTTCCTTTGATTACGCTTATTCTGTAACATTTAAGTGGACAAGTTGATCGGGTCACCGGGCTCTTTGAACACCCTTAATTTCTATATATTTGTGAAATCCGTTTATCTAACTCAAAATAAATATATTGTAAAAATAATAATAATAAGACCCCAAAAATGGGTTCCGCGAAAAAACAGATCCCCCCCAAAACAATTTTTTTCTTCTTCTCCTGTTGCACTCTCTTCTCTGATCCTGCCCCGGACAATCCCCACGTCGCCCCCACCCACCTTGTTTTAAGGTTTCTTTCTTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTGAGGTGTTTGTCATATTTAAAGTAAGACGTGCCCTTTTTGTGAAGCCCCAAAGTTTGGGTTTTTTTTTTTTAATTATAAATAGTAATAATTAAGGTTTTTCCTTCTTTATTAACTAAAAGAAATCAAATTTACTAAACCTAAATACAAAATTTATTGTGTTTAGGGTTTCTTTTTCCTCCCCATATTTCTACTTCAACCATGCTTTCTCTTCCTTAAGTAGTACTTTTATATATATATATATATAGTGCGCCTTACAAAAAAAAAATCGACGCTTTTTTATTATTGTGCCTTGCATTTATGCTCTAGAAGATTATTGCGCTTTAGTGGTGCCTTGAGCTTTAAAAAACAATGGTAATAAGTTACTTAATTCAACCTTGCAGTTTTGATGAGGAAATATTACATATCTCTGGATCTCTAGTTCCATCTCACACAGGAAGCATCCATTGGTTGGAGAAGAATTCTGTTGAAGGTTCAGTAACTAATAGGTGAGAAACTAAATTCTATGAGGTTTTGAGCTAATAATCCCCAAATCTCCTATTCTGACTTTTTCCAGCTTAATTTTGTAGCAGCAAAAAGAAGACGAGAGAAAACGAGGGAAAGGCGAGCGTTTCCACAGATGCGAATGCACTTATCTTGAACAATGACCATCAATCAAAAACCAAAAGGCAAAAAACTACCAGAATATCTTGAGGACTGCTAATCTAATTGTCATATAACATAGATTGTTTTTGTATCAGGTAATTTTTCTTACTCCCTAAGTAGGGTGGCTAAATCCTTGCTCTCAATTCATACCTAAAATCTGCATTAGCCAGAAATTTAGCTGAAAAGTAAACTTGAATTGGATTGCAGATAGGAGTGTAGATGGGCCGGGTCGTGTCAGTTTTCCTATAAAGCCGACCCGGTTCGGGTTTTCAAACTTCAAAGCAGAGATCCTCATTGTTTTCCTATAGTAAGAAAGGCTTGGGCGATGCACCTTGCACTTGGGAAGATCTCCCCTACTTAGATGATAACAACTTCATAGATTAGGGTTTGGACAAATACGGCTCCCCATTATTTTTGCAACCGTTATGAAGAGAGGCCCAAATGCATGTATTAAAGCTTGTCTAATGACAATTTATCAATTTTCACCTTTAAATTTTAAATTTTTGTTGGAAGCTTGTAGAAGGTTATTATTATTATTGTTTTGGGCAAATTGTGAAAACCACTCTAATGTTCGTTGGTGCAGTTATATCTTCAAATTTTTGTTCA

mRNA sequence

TTTTTTAAAAAAAAAAAACTCAAAATAAATAAGTAAAACTCCAAAAACCAGTTCGACAAAACAGAAACCCCCCCCCCACGCCCCATCTCCTCTTCTCCGACCCCGCTGCTGACAACACCCACGCCGCCGCCTCCCACCTTGTTTTAAGCTCTCTTTCTTCTCCGGCCGCTGCCAATTTGTCTCCTCCTTGTTTCAGTTGCCATTTCAATGGAGGGGCTCAAGGTTTCGGATGCTAATTTGGTTGTTTACGTTCACCCATCTAAAAGTAAGAAGGTTTCACAAGCCGTGCTTCGAGAGCTTGGCACTATGCTGCTAAAATTTGATGAAAAGTTTGAAGGCGTGCTATTGGCTTATGAGGCCAACATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACCATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTAAGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTTCTTCTGGTGTAATAACCGATGAAGATATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGTTCACAAGCACCATGTAATAAAAGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTACATATCTCTGGATCTCTAGTTCCATCTCACACAGGAAGCATCCATTGGTTGGAGAAGAATTCTGTTGAAGGTTCAGTAACTAATAGCAGCAAAAAGAAGACGAGAGAAAACGAGGGAAAGGCGAGCGTTTCCACAGATGCGAATGCACTTATCTTGAACAATGACCATCAATCAAAAACCAAAAGGCAAAAAACTACCAGAATATCTTGAGGACTGCTAATCTAATTGTCATATAACATAGATTGTTTTTGTATCAGATAGGAGTGTAGATGGGCCGGGTCGTGTCAGTTTTCCTATAAAGCCGACCCGGTTCGGGTTTTCAAACTTCAAAGCAGAGATCCTCATTGTTTTCCTATAGTAAGAAAGGCTTGGGCGATGCACCTTGCACTTGGGAAGATCTCCCCTACTTAGATGATAACAACTTCATAGATTAGGGTTTGGACAAATACGGCTCCCCATTATTTTTGCAACCGTTATGAAGAGAGGCCCAAATGCATGTATTAAAGCTTGTCTAATGACAATTTATCAATTTTCACCTTTAAATTTTAAATTTTTGTTGGAAGCTTGTAGAAGGTTATTATTATTATTGTTTTGGGCAAATTGTGAAAACCACTCTAATGTTCGTTGGTGCAGTTATATCTTCAAATTTTTGTTCA

Coding sequence (CDS)

ATGGAGGGGCTCAAGGTTTCGGATGCTAATTTGGTTGTTTACGTTCACCCATCTAAAAGTAAGAAGGTTTCACAAGCCGTGCTTCGAGAGCTTGGCACTATGCTGCTAAAATTTGATGAAAAGTTTGAAGGCGTGCTATTGGCTTATGAGGCCAACATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACCATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTAAGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTTCTTCTGGTGTAATAACCGATGAAGATATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGTTCACAAGCACCATGTAATAAAAGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTACATATCTCTGGATCTCTAGTTCCATCTCACACAGGAAGCATCCATTGGTTGGAGAAGAATTCTGTTGAAGGTTCAGTAACTAATAGCAGCAAAAAGAAGACGAGAGAAAACGAGGGAAAGGCGAGCGTTTCCACAGATGCGAATGCACTTATCTTGAACAATGACCATCAATCAAAAACCAAAAGGCAAAAAACTACCAGAATATCTTGA

Protein sequence

MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEFKHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSVEGSVTNSSKKKTRENEGKASVSTDANALILNNDHQSKTKRQKTTRIS

Homology

[Close]

BLAST of Bhi06G001735 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-61
Identity = 109/194 (56.19%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLK+S+A L++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGFS+ VITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R + GE  FVSR HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGSVTNSSKKKTR 195
            E   T+   K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

[Close]

BLAST of Bhi06G001735 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-61
Identity = 109/194 (56.19%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLK+S+A L++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGFS+ VITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R + GE  FVSR HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGSVTNSSKKKTR 195
            E   T+   K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

[Close]

BLAST of Bhi06G001735 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-05
Identity = 38/163 (23.31%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 10  NLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYE-ANIIDKNAKILSGVHPYF 69
           +L + + P  S+    A+   + +M+L    +  G++LAY+    ++K+AK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  GVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDI-RDEFKHRTKHG 129
            + ++  +L+FSPK    LEGK+  +    I +++LG  +  I  + I +D         
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMFVSRVHKHHVIKVGTMIRFLVKSFDEE--ILHISGSLVPS 169
           EE    + +  ++++ G  + F+V     E  +  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

[Close]

BLAST of Bhi06G001735 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.2e-106
Identity = 203/232 (87.50%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLKVSDANLVVYVHPSKSKKVSQAVLRELG MLLKFDE+FEGVLLAY+A I DK+AKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGF+S  ITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSR HKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVTNSSKKKTRENEGKA----SVSTDANALILNNDHQSKTKRQKTTRIS 229
           +EGSVT+  +KKTR+NEG++    SV+TD NALILNNDHQSKTK+QKT+RIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Bhi06G001735 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.2e-106
Identity = 209/232 (90.09%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELG MLLKFDEKFEGVLLAYEA IIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGF+S VIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSR HKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVTNSSKKKTRENEG----KASVSTDANALILNNDHQSKTKRQKTTRIS 229
           VEGSV+ SSKKK RENEG    + +V TD NA+IL NDHQ KTK+QKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of Bhi06G001735 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.2e-106
Identity = 209/232 (90.09%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELG MLLKFDEKFEGVLLAYEA IIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGF+S VIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSR HKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVTNSSKKKTRENEG----KASVSTDANALILNNDHQSKTKRQKTTRIS 229
           VEGSV+ SSKKK RENEG    + +V TD NA+IL NDHQ KTK+QKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of Bhi06G001735 vs. ExPASy TrEMBL
Match: A0A6J1FN75 (uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 204/232 (87.93%), Postives = 221/232 (95.26%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELG MLLKFDE+FEGVLLAYEANIIDK+AKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGF+S VITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSR +KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 VEGSVTNSSKKKTRENEGKA----SVSTDANALILNNDHQSKTKRQKTTRIS 229
           VEGSVT+ S+KKTR+N+ ++    SV+TD NAL+LNNDHQSKTK+QKT+RIS
Sbjct: 181 VEGSVTSRSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Bhi06G001735 vs. ExPASy TrEMBL
Match: A0A0A0LGG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 6.0e-105
Identity = 206/232 (88.79%), Postives = 214/232 (92.24%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKK+SQAVLRELG MLLKFDEKFEGVLLAYEA IIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGF+S VIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSR HKHH+IKVGTMIR LVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVTNSSKKKTRENEG----KASVSTDANALILNNDHQSKTKRQKTTRIS 229
           VEGSVT  SK+K RENEG    + SV TD NA+ILNNDHQ KTK+QK TRIS
Sbjct: 181 VEGSVT-MSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

The following BLAST results are available for this feature:

BLAST of Bhi06G001735 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	1.4e-61	56.19	DNA-directed RNA polymerases	[more]
AT1G75670.2	1.4e-61	56.19	DNA-directed RNA polymerases	[more]

BLAST of Bhi06G001735 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	3.0e-05	23.31	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Bhi06G001735 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5Y9	3.2e-106	87.50	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A1S4E5I5	9.2e-106	90.09	uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E6A0	9.2e-106	90.09	Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa...	[more]
A0A6J1FN75	1.2e-105	87.93	uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LGG8	6.0e-105	88.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 9.4E-7 score: 30.6
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..228 e-value: 2.1E-5 score: 26.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..228
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..212
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001735	Bhi06M001735	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity