Bhi06G001266 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001266
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Lipoxygenase
Location	chr6: 43034603 .. 43035010 (+)
RNA-Seq Expression	Bhi06G001266
Synteny	Bhi06G001266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATTTCATTCCTCCACCCAACAGCTTGTTCTTCAGGCTATTAAAACAAAGAGAAGGAAAGAGTGGGAAAAAAAGATTGTTAGAAAAAAAAAAAAAAAAAAAGTGAAAATGTTTTCTATTGGAAAGAATATCATAGAGGGAGCCTTGAATACTACTGGAGATCTTGCTGGCTCTGTTATCAATGCTGGAAGTAACATTGCAGATCAAATTTCTAATCTTGGAGGAAAGAAAATCAAAGGAAAAGTCATTCTTATGAGAAGCAATGTTTTGGATTTCACTGAGTTTCATTCCTCTCTTCTTGATAATTTCACTGAACTCTTGGGCGGTGGTGTTTCTCTTCAACTCATTAGTGCCACTCAAGCTTGTAACATCTCTTTCCCTTCAACTCTCTATATATTTGTTTGA

mRNA sequence

GAAAAATTTCATTCCTCCACCCAACAGCTTGTTCTTCAGGCTATTAAAACAAAGAGAAGGAAAGAGTGGGAAAAAAAGATTGTTAGAAAAAAAAAAAAAAAAAAAGTGAAAATGTTTTCTATTGGAAAGAATATCATAGAGGGAGCCTTGAATACTACTGGAGATCTTGCTGGCTCTGTTATCAATGCTGGAAGTAACATTGCAGATCAAATTTCTAATCTTGGAGGAAAGAAAATCAAAGGAAAAGTCATTCTTATGAGAAGCAATGTTTTGGATTTCACTGAGTTTCATTCCTCTCTTCTTGATAATTTCACTGAACTCTTGGGCGGTGGTGTTTCTCTTCAACTCATTAGTGCCACTCAAGCTTGTAACATCTCTTTCCCTTCAACTCTCTATATATTTGTTTGA

Coding sequence (CDS)

ATGTTTTCTATTGGAAAGAATATCATAGAGGGAGCCTTGAATACTACTGGAGATCTTGCTGGCTCTGTTATCAATGCTGGAAGTAACATTGCAGATCAAATTTCTAATCTTGGAGGAAAGAAAATCAAAGGAAAAGTCATTCTTATGAGAAGCAATGTTTTGGATTTCACTGAGTTTCATTCCTCTCTTCTTGATAATTTCACTGAACTCTTGGGCGGTGGTGTTTCTCTTCAACTCATTAGTGCCACTCAAGCTTGTAACATCTCTTTCCCTTCAACTCTCTATATATTTGTTTGA

Protein sequence

MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNLGGKKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISATQACNISFPSTLYIFV

Homology

[Close]

BLAST of Bhi06G001266 vs. TAIR 10
Match: AT1G55020.1 (lipoxygenase 1 )

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-07
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 40 KKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISA 83
          KK+KG V+LM+ NVLDF +F++S LD   E LG  ++L+L+S+
Sbjct: 19 KKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSS 61

[Close]

BLAST of Bhi06G001266 vs. TAIR 10
Match: AT3G22400.1 (PLAT/LH2 domain-containing lipoxygenase family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 41 KIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISATQ 85
          KI+G+V++M+ N+LDF +  +SLLD   ELLG  VSL LIS+ Q
Sbjct: 34 KIEGEVVVMKKNLLDFKDVMASLLDRVNELLGRRVSLHLISSHQ 77

[Close]

BLAST of Bhi06G001266 vs. ExPASy Swiss-Prot
Match: Q43191 (Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum OX=4113 GN=LOX1.5 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 39 GKKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISATQA 86
          GKK+KG ++LM+ NVLDF + ++SLLD   E LG  VSLQLIS   A
Sbjct: 18 GKKVKGTIVLMKKNVLDFNDVNASLLDGVLEFLGKRVSLQLISVVHA 64

[Close]

BLAST of Bhi06G001266 vs. ExPASy Swiss-Prot
Match: Q06327 (Linoleate 9S-lipoxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=LOX1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-06
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 40 KKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISA 83
          KK+KG V+LM+ NVLDF +F++S LD   E LG  ++L+L+S+
Sbjct: 19 KKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSS 61

[Close]

BLAST of Bhi06G001266 vs. ExPASy Swiss-Prot
Match: Q43190 (Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum OX=4113 GN=LOX1.4 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 40 KKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISATQA 86
          KK+KG V++M+ N LDFT+   SL D   E LG  VS QLIS+ Q+
Sbjct: 17 KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQS 62

[Close]

BLAST of Bhi06G001266 vs. ExPASy Swiss-Prot
Match: Q41238 (Linoleate 9S-lipoxygenase 6 (Fragment) OS=Solanum tuberosum OX=4113 GN=LOX1.6 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 40 KKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISATQA 86
          KK+KG V++M+ N LDFT+   SL D   E LG  VS QLIS+ Q+
Sbjct: 14 KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQS 59

[Close]

BLAST of Bhi06G001266 vs. ExPASy Swiss-Prot
Match: P38415 (Linoleate 9S-lipoxygenase A OS=Solanum lycopersicum OX=4081 GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 40 KKIKGKVILMRSNVLDFTEFHSSLLDNFTELLGGGVSLQLISATQA 86
          KK+KG V++M+ N LDFT+   SL D   E LG  VS QLIS+ Q+
Sbjct: 17 KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQS 62

[Close]

BLAST of Bhi06G001266 vs. ExPASy TrEMBL
Match: A0A0A0LGD7 (Lipoxygenase OS=Cucumis sativus OX=3659 GN=Csa_2G027460 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.4e-40
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNLGGKKIKGKVILMRSNVLDFTEFH 60
          MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISN+GG+KIKGKVILMRSNVLDFTEFH
Sbjct: 1  MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNIGGQKIKGKVILMRSNVLDFTEFH 60

Query: 61 SSLLDNFTELLGGGVSLQLISATQACNISFP 92
          SSLLDNFTELLGGGVSLQLISATQ CN SFP
Sbjct: 61 SSLLDNFTELLGGGVSLQLISATQTCNFSFP 91

[Close]

BLAST of Bhi06G001266 vs. ExPASy TrEMBL
Match: A0A0A0LFV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G026940 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNLGGKKIKGKVILMRSNVLDFTEFH 60
          MFSIGKNIIEGALNTTGDLAGSVINAG NIADQISN+GG+KIKGKVILMRSNVLDFTEFH
Sbjct: 1  MFSIGKNIIEGALNTTGDLAGSVINAGGNIADQISNIGGQKIKGKVILMRSNVLDFTEFH 60

Query: 61 SSLLDNFTELLGGGVSLQLISATQACNISFP 92
          SSLLDNFTELLGGGVSLQLISATQ CN SFP
Sbjct: 61 SSLLDNFTELLGGGVSLQLISATQTCNFSFP 91

[Close]

BLAST of Bhi06G001266 vs. ExPASy TrEMBL
Match: A0A5A7U194 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00720 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 81/84 (96.43%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNLGGKKIKGKVILMRSNVLDFTEFH 60
          MFSIGKNIIEGALNTTGDLAGSVI+AGSNIADQISN+GG+KIKGKVILMRSNVLDFTEFH
Sbjct: 1  MFSIGKNIIEGALNTTGDLAGSVIHAGSNIADQISNIGGQKIKGKVILMRSNVLDFTEFH 60

Query: 61 SSLLDNFTELLGGGVSLQLISATQ 85
          SSLLDNFTELLGGGVSLQLISATQ
Sbjct: 61 SSLLDNFTELLGGGVSLQLISATQ 84

[Close]

BLAST of Bhi06G001266 vs. ExPASy TrEMBL
Match: A0A5A7TYA2 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00700 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 81/84 (96.43%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNLGGKKIKGKVILMRSNVLDFTEFH 60
          MFSIGKNIIEGALNTTGDLAGSVI+AGSNIADQISN+GG+KIKGKVILMRSNVLDFTEFH
Sbjct: 1  MFSIGKNIIEGALNTTGDLAGSVIDAGSNIADQISNIGGQKIKGKVILMRSNVLDFTEFH 60

Query: 61 SSLLDNFTELLGGGVSLQLISATQ 85
          SSLLDNFTELLGGGVSLQLISATQ
Sbjct: 61 SSLLDNFTELLGGGVSLQLISATQ 84

[Close]

BLAST of Bhi06G001266 vs. ExPASy TrEMBL
Match: Q42705 (Lipoxygenase OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MFSIGKNIIEGALNTTGDLAGSVINAGSNIADQISNLGGKKIKGKVILMRSNVLDFTEFH 60
          MFSIGKNIIEGALNTTGDLAGSVINAG NIADQISN+GG+KIKGKVILMRSNV+DFTEFH
Sbjct: 1  MFSIGKNIIEGALNTTGDLAGSVINAGGNIADQISNIGGQKIKGKVILMRSNVMDFTEFH 60

Query: 61 SSLLDNFTELLGGGVSLQLISATQ 85
          SSLLDNFTELLGGGVSLQLISATQ
Sbjct: 61 SSLLDNFTELLGGGVSLQLISATQ 84

The following BLAST results are available for this feature:

BLAST of Bhi06G001266 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55020.1	3.2e-07	51.16	lipoxygenase 1	[more]
AT3G22400.1	2.7e-06	54.55	PLAT/LH2 domain-containing lipoxygenase family protein	[more]

BLAST of Bhi06G001266 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43191	1.4e-07	57.45	Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum OX=4113 GN=LOX1.5 PE=2...	[more]
Q06327	4.5e-06	51.16	Linoleate 9S-lipoxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=LOX1 PE=1 SV=1	[more]
Q43190	1.0e-05	52.17	Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum OX=4113 GN=LOX1.4 PE=2...	[more]
Q41238	1.0e-05	52.17	Linoleate 9S-lipoxygenase 6 (Fragment) OS=Solanum tuberosum OX=4113 GN=LOX1.6 PE...	[more]
P38415	1.0e-05	52.17	Linoleate 9S-lipoxygenase A OS=Solanum lycopersicum OX=4081 GN=LOX1.1 PE=2 SV=1	[more]

BLAST of Bhi06G001266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGD7	8.4e-40	95.60	Lipoxygenase OS=Cucumis sativus OX=3659 GN=Csa_2G027460 PE=4 SV=1	[more]
A0A0A0LFV3	2.4e-39	94.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G026940 PE=4 SV=1	[more]
A0A5A7U194	2.1e-35	96.43	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00720 P...	[more]
A0A5A7TYA2	2.1e-35	96.43	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00700 P...	[more]
Q42705	2.8e-35	95.24	Lipoxygenase OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 33..89 e-value: 3.1E-11 score: 45.3
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 40..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001266	Bhi06M001266	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0031408	oxylipin biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0005515	protein binding
molecular_function	GO:0051119	sugar transmembrane transporter activity