Bhi06G000610 (gene) Wax gourd (B227) v1

Overview
NameBhi06G000610
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionNADH:ubiquinone oxidoreductase, 30kDa subunit
Locationchr6: 16485653 .. 16485831 (-)
RNA-Seq ExpressionBhi06G000610
SyntenyBhi06G000610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATCCATTTTCTGAAAGATTCGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCTTCGATGAGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTTCATTATTATTAG

mRNA sequence

GAATCCATTTTCTGAAAGATTCGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCTTCGATGAGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTTCATTATTATTAG

Coding sequence (CDS)

GAATCCATTTTCTGAAAGATTCGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCTTCGATGAGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTTCATTATTATTAG

Protein sequence

IHFLKDSAFVLWWVSEIFDETYVVLKGYLYDPIDCVKPAVATEPGKVYRKDSSFLHYY
Homology
[Close]
BLAST of Bhi06G000610 vs. ExPASy TrEMBL
Match: A0A103XYX3 (NAD(P)H dehydrogenase subunit 5 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_022308 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 8  AFVLWWVSEIFDETYVVLKGYLYDPIDCVKPAVATEPGKVY 49
          AFVLWWVSEI   TYVVLKGYLY+PIDCVKPAVA E GK Y
Sbjct: 49 AFVLWWVSEILSMTYVVLKGYLYNPIDCVKPAVAAEAGKSY 89

[Close]
BLAST of Bhi06G000610 vs. ExPASy TrEMBL
Match: A0A103YGA0 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_013063 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21 TYVVLKGYLYDPIDCVKPAVATEPGKVYRKDSS 54
          TYVVL+GYLY+PIDCVKPAVA EPGKVYRKD S
Sbjct: 2  TYVVLEGYLYNPIDCVKPAVAAEPGKVYRKDIS 34

[Close]
BLAST of Bhi06G000610 vs. ExPASy TrEMBL
Match: A0A103YLN6 (NADH:ubiquinone oxidoreductase, 30kDa subunit (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010272 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 8   AFVLWWVSEIFDETYVVLKGYLYDPIDCVKPAV 41
           AFVLWWVSEI   TYVVLKGYLY+PIDC+KP V
Sbjct: 69  AFVLWWVSEILSTTYVVLKGYLYNPIDCIKPVV 101

[Close]
BLAST of Bhi06G000610 vs. ExPASy TrEMBL
Match: A0A5K1AZM2 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13307 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 24 VLKGYLYDPIDCVKPAVATEPGKVYRKD 52
          +LKGYLYDPIDC +PAVATEPGKVYRKD
Sbjct: 1  MLKGYLYDPIDCARPAVATEPGKVYRKD 28

[Close]
BLAST of Bhi06G000610 vs. ExPASy TrEMBL
Match: A0A7L7YVQ2 (Uncharacterized protein OS=Oryza sativa OX=4530 GN=ORF131 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 15 SEIFDETYVVLKGYLYDPIDCVKPAVATEPGKVYRKDSSF 55
          SEI   TYVVLKGYLYDPIDC++PAVA E GK   K   F
Sbjct: 24 SEILSMTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLF 63

The following BLAST results are available for this feature:
BLAST of Bhi06G000610 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G000610 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G000610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A103XYX31.1e-1082.93NAD(P)H dehydrogenase subunit 5 OS=Cynara cardunculus var. scolymus OX=59895 GN=... [more]
A0A103YGA06.5e-0887.88Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_013... [more]
A0A103YLN62.5e-0781.82NADH:ubiquinone oxidoreductase, 30kDa subunit (Fragment) OS=Cynara cardunculus v... [more]
A0A5K1AZM23.6e-0689.29Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13... [more]
A0A7L7YVQ21.0e-0567.50Uncharacterized protein OS=Oryza sativa OX=4530 GN=ORF131 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000610Bhi06M000610mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0048038 quinone binding