Bhi06G000543 (gene) Wax gourd (B227) v1

Overview
NameBhi06G000543
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRNA-binding family protein, putative isoform 1
Locationchr6: 14508371 .. 14508622 (-)
RNA-Seq ExpressionBhi06G000543
SyntenyBhi06G000543
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAAAAACTTCGAGTTTAGCTCGCGAAAGTTCAGTGGGTAATAGGACTCATTCTCAACTAAACATTCTTGAGGAGGAAGTAGAGCAGTTTGCTGACATAGATGTGGATTTAGCCGGTGAATTCATGAGATTAAGGATCAAAGATATTGAAGACAATCTGACTTATGTCAGTGAATTACATTCGGATGATGAAGATGATAATGGTGTAGAATCAAGAATAGAGTCCAAAATTCAGTCACCATCCTAG

mRNA sequence

ATGAATCGAAAAACTTCGAGTTTAGCTCGCGAAAGTTCAGTGGGTAATAGGACTCATTCTCAACTAAACATTCTTGAGGAGGAAGTAGAGCAGTTTGCTGACATAGATGTGGATTTAGCCGGTGAATTCATGAGATTAAGGATCAAAGATATTGAAGACAATCTGACTTATGTCAGTGAATTACATTCGGATGATGAAGATGATAATGGTGTAGAATCAAGAATAGAGTCCAAAATTCAGTCACCATCCTAG

Coding sequence (CDS)

ATGAATCGAAAAACTTCGAGTTTAGCTCGCGAAAGTTCAGTGGGTAATAGGACTCATTCTCAACTAAACATTCTTGAGGAGGAAGTAGAGCAGTTTGCTGACATAGATGTGGATTTAGCCGGTGAATTCATGAGATTAAGGATCAAAGATATTGAAGACAATCTGACTTATGTCAGTGAATTACATTCGGATGATGAAGATGATAATGGTGTAGAATCAAGAATAGAGTCCAAAATTCAGTCACCATCCTAG

Protein sequence

MNRKTSSLARESSVGNRTHSQLNILEEEVEQFADIDVDLAGEFMRLRIKDIEDNLTYVSELHSDDEDDNGVESRIESKIQSPS
Homology
BLAST of Bhi06G000543 vs. ExPASy TrEMBL
Match: A0A6J1KJD4 (uncharacterized protein LOC111493728 OS=Cucurbita maxima OX=3661 GN=LOC111493728 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1   MNRKTSSLARESSVGNRTHSQLNILEEEVEQFADIDVDLAGEFMRLRIKDIEDNLTYVSE 60
           MN++TS+LARE SV +  HS+L+ILEE+ EQ AD+D+DLAGE  R R++DIEDNL YVSE
Sbjct: 284 MNQQTSNLAREISVVSTNHSRLSILEEKAEQVADMDMDLAGEVERTRVEDIEDNLAYVSE 343

Query: 61  LHSDDEDDNGVESRIESKIQSPS 84
           LHSDD DDNGVESR ESKI  PS
Sbjct: 344 LHSDD-DDNGVESRTESKILPPS 365

BLAST of Bhi06G000543 vs. ExPASy TrEMBL
Match: A0A1S3CPG6 (uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1   MNRKTSSLARESSVGNRTHSQLNILEEEVEQFADIDVDLAGEFMRLRIKDIEDNLTYVSE 60
           MNR+TSS AR+SSVG+  +S+L+ILEEE EQFADIDVDLA E  R +I++ ED+L YV+E
Sbjct: 262 MNRQTSSSARKSSVGSTNNSRLSILEEEAEQFADIDVDLASEAARTKIEENEDDLAYVNE 321

Query: 61  LHSDDEDDNGVESRIESKIQSPS 84
            HS D DDNGVESR E KIQSPS
Sbjct: 322 SHSHDVDDNGVESRTEFKIQSPS 344

BLAST of Bhi06G000543 vs. ExPASy TrEMBL
Match: A0A5A7TB79 (RNA-binding family protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00590 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1  MNRKTSSLARESSVGNRTHSQLNILEEEVEQFADIDVDLAGEFMRLRIKDIEDNLTYVSE 60
          MNR+TSS AR+SSVG+  +S+L+ILEEE EQFADIDVDLA E  R +I++ ED+L YV+E
Sbjct: 1  MNRQTSSSARKSSVGSTNNSRLSILEEEAEQFADIDVDLASEATRTKIEENEDDLAYVNE 60

Query: 61 LHSDDEDDNGVESRIESKIQSPS 84
           HS D DDNGVESR E KIQSPS
Sbjct: 61 SHSHDVDDNGVESRTEFKIQSPS 83

BLAST of Bhi06G000543 vs. ExPASy TrEMBL
Match: A0A0A0KQN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-19
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 1   MNRKTSSLARESSVGNRTHSQLNILEEEVEQFADIDVDLAGEFMRLRIKDIEDNLTYVSE 60
           MNR+TSS AR SS+ +  HS+L+ILEEE EQF DIDVDLA E  R + +DIED+L YVSE
Sbjct: 294 MNRQTSSSARNSSMSSTNHSRLSILEEEAEQFVDIDVDLASEATRTKTEDIEDDLAYVSE 353

Query: 61  LHSDDEDDNGVESRIESKIQSPS 84
            HS +EDDNGVESR E  IQSPS
Sbjct: 354 SHSHEEDDNGVESRTEFTIQSPS 376

BLAST of Bhi06G000543 vs. ExPASy TrEMBL
Match: A0A6J1G3T4 (uncharacterized protein LOC111450524 OS=Cucurbita moschata OX=3662 GN=LOC111450524 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-19
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1   MNRKTSSLARESSVGNRTHSQLNILEEEVEQFADIDVDLAGEFMRLRIKDIEDNLTYVSE 60
           MN++TS+ ARE SV +   S+L+ILEEE EQ ADID+DLAGE  R R++D+EDNL YVSE
Sbjct: 265 MNQQTSNSAREISVVSTNRSRLSILEEEAEQVADIDMDLAGEVERTRVEDVEDNLAYVSE 324

Query: 61  LHSDDEDDNGVESRIESKI 80
           L SDDEDDNGVESR ESKI
Sbjct: 325 LDSDDEDDNGVESRTESKI 343

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KJD41.1e-1969.88uncharacterized protein LOC111493728 OS=Cucurbita maxima OX=3661 GN=LOC111493728... [more]
A0A1S3CPG62.4e-1968.67uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=... [more]
A0A5A7TB792.4e-1968.67RNA-binding family protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0KQN33.1e-1967.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1[more]
A0A6J1G3T46.9e-1969.62uncharacterized protein LOC111450524 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000543Bhi06M000543mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding