Bhi06G000370 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000370
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr6: 9805983 .. 9807880 (+)
RNA-Seq Expression	Bhi06G000370
Synteny	Bhi06G000370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGCTCCGTTCTGCTCTCTATACTGTAAAAAAGGAAGTTGTCGAAACCGTTGAACAATACTTTCGCAAGGTAAAAATTTTTGTTGACAGGGTTTCCGCCGCTGGTGTCACAGTTGACGATGAAGAAACGCTGCTCCATATACTCAACGACCTGTCGATCGAGTACAATGCCTTCCAGACATCGATTCGCACGAGGGACACAACATTAACCCTTGCTGAGCTTGAAGTTATGCTTGATGTGGAATCAAAGACCATAGTAGTTCCATCTTTGGCAGTCAAACCCACCCCGACGACCATGGCTGCCTTTCAATCCTTTCCTTGCGACACCAGACGTTTTGGACAAAATGGGAACATGAGAGGTGCTGGTCGAAATTATCGAGGAAGAGGAAGAGGTGGAAGGGGTTATTCTCACTCTTGTTGTCGCTTACAACGGCATTTGCATCAGATGGATGCTAAAAAAAAATTTCTTCATGATTAGTTGCAGGAAGAAGTCTATGACTCAACCTATTGGCTTTGTTGATAAAACATACCCTGTTCATATTTGTTTACTCCACAAAAGTCTCTACAAGACTCAAGCAAGCACCATGAGTGTGGTATGATTGCTTCACCTCTTATTTGCTCGATCAATTGCAACTGTCATGTCCTCTACCGATACTTCACTATTTGTTCGTTATATGGGATCCTCGTTAACTTATCTGTTATTGTATGTGAATGACATTGTTATTACTAGCCTTGATTCAGCTTATGTTAGACAATTTAAACTTTTCTTGTCTTCTGAGTTTCAAATTTTAGACTTGGATAATCTCAGTTATTTTCAGGGTCTTGAAATAAAAAATGTCTTTGGTGGTATCTTTGTAAATCAAGCGAATATCTCGTTGATCTCCTAACTACATCTGGAATGTCAACGGCGAAACCTTGTCTCACAACCATGTACACCATAGTTGACCTTCATACTAATGCATCTTCATTCTCTAATGCTACTAGGAATAGAAAGCTCGTTAGTTCCTTGTAGTATCTCACATTCACTTGCCAAGATAATGTCTTTGCTGTAAATCGTGTTGGTTCATGCAAACTGTACTGTTATGCACTATATTGCTGTCAAACGAATTTTGGGCATCTTTGTGGTACACTTAGTTTTGGTATTTTGTTCCGATCTGGAGCCTTAACTCTTCAAGCCTTTTGTGATGATGATTAGGCTGGTTTCTTTCGGTCGTCTATCTACCACGGGGTACGTGATCCTCCTCGGGTCCTCTCCTATATCTTGGTATGCTAAAGAGTAATCTACTATTTCACGATCTCGATGGAAGCTGAATATCGTGCTTTTGCCATTACAGCTTTTGATGTTTATTGACTACGATAGTTGCTATGTGATCTTCATATCTTTCTCTCTCATCCTCCAGTGTTATGGTGTGATAATATATCTGTTATATCTGTGGTAAGCAATCCAGTTTTTCACGCACTTTCAAAGTACATTGAAATTGATTATCATTTTGTTTGTGAGAAGATCATCCGTAAAGATTTTTTTTGTAAACTTCATCTCTACCCAAGACCAGGTTGCTGATCTGTTTACTAAACCACTCTCATATCATTCCTTCCAGACATGCTATGGCAAACTAATTACTTCACTTTCATCTCGAGTTTTAGGGGGGATATTAGGTATATTAAAGTTGTTGTAAGTTCTCACCTCATATCTTGTTACTTTGTTATTAGATTTTCCTATTTTTAGGAAATGACACTTGTAAATCTTGTTATCAACCTACTCTAAATGGGTGAATCTGGTTATCAACCTACTATAAATGGGTGTTCACTTCACAATTCTAGATGTGGAAAATACAGAGAGCAAAATGTTGAAAATATCTTCTTTTTATCTATATTATGGTTTTAGGTATATAG

mRNA sequence

ATGTTGGAGCTCCGTTCTGCTCTCTATACTGTAAAAAAGGAAGTTGTCGAAACCGTTGAACAATACTTTCGCAAGGTAAAAATTTTTGTTGACAGGGTTTCCGCCGCTGGTGTCACAGTTGACGATGAAGAAACGCTGCTCCATATACTCAACGACCTGTCGATCGAGTACAATGCCTTCCAGACATCGATTCGCACGAGGGACACAACATTAACCCTTGCTGAGCTTGAAGTTATGCTTGATGTGGAATCAAAGACCATAGTAGTTCCATCTTTGGCAGTCAAACCCACCCCGACGACCATGGCTGCCTTTCAATCCTTTCCTTGCGACACCAGACGTTTTGGACAAAATGGGAACATGAGAGGTGCTGGTCGAAATTATCGAGGAAGAGGAAGAGGTATATAG

Coding sequence (CDS)

ATGTTGGAGCTCCGTTCTGCTCTCTATACTGTAAAAAAGGAAGTTGTCGAAACCGTTGAACAATACTTTCGCAAGGTAAAAATTTTTGTTGACAGGGTTTCCGCCGCTGGTGTCACAGTTGACGATGAAGAAACGCTGCTCCATATACTCAACGACCTGTCGATCGAGTACAATGCCTTCCAGACATCGATTCGCACGAGGGACACAACATTAACCCTTGCTGAGCTTGAAGTTATGCTTGATGTGGAATCAAAGACCATAGTAGTTCCATCTTTGGCAGTCAAACCCACCCCGACGACCATGGCTGCCTTTCAATCCTTTCCTTGCGACACCAGACGTTTTGGACAAAATGGGAACATGAGAGGTGCTGGTCGAAATTATCGAGGAAGAGGAAGAGGTATATAG

Protein sequence

MLELRSALYTVKKEVVETVEQYFRKVKIFVDRVSAAGVTVDDEETLLHILNDLSIEYNAFQTSIRTRDTTLTLAELEVMLDVESKTIVVPSLAVKPTPTTMAAFQSFPCDTRRFGQNGNMRGAGRNYRGRGRGI

Homology

[Close]

BLAST of Bhi06G000370 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 54/131 (41.22%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 1   MLELRSALYTVKKEVVETVEQYFRKVKIFVDRVSAAGVTVDDEETLLHILNDLSIEYNAF 60
           +L+LRSALYT+ K   E+++QY  ++K  VD+++AA V+++DEE L+H LN L   +NAF
Sbjct: 147 ILDLRSALYTINKNPSESIDQYTSRIKALVDKLAAASVSLEDEEILVHTLNGLPAAFNAF 206

Query: 61  QTSIRTRDTTLTLAELEVMLDVESKTIVVPSLAVKPTPTTMAAFQSFPCDTRRFGQNGNM 120
           +TSIRTR   ++L EL  +L +  +TI+  + A++  PT MAAF           Q+   
Sbjct: 207 RTSIRTRSGNISLEELHTLL-ISEETIIAKTSAIEAIPTAMAAFHP--------PQHHGS 266

Query: 121 RGAGRNYRGRG 132
           RG GR +   G
Sbjct: 267 RGRGRRFHSTG 268

[Close]

BLAST of Bhi06G000370 vs. ExPASy TrEMBL
Match: A0A5D3BA30 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00700 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 1   MLELRSALYTVKKEVVETVEQYFRKVKIFVDRVSAAGVTVDDEETLLHILNDLSIEYNAF 60
           +L+LRSALYT+KK   E+++QY  ++K  VD+++AA V+++DEE L+H LN L + +NAF
Sbjct: 49  ILDLRSALYTMKKTPSESIDQYTSRIKALVDKLAAAFVSLEDEEILVHTLNGLQVAFNAF 108

Query: 61  QTSIRTRDTTLTLAELEVMLDVESKTIVVPSLAVKPTPTTMAAFQSFPCDTRRFGQNGNM 120
           +TSIRTR   ++L EL  +L +  +T +  + A++  PT MAAF           Q+   
Sbjct: 109 RTSIRTRSGNISLEELHTLL-ISKETTMAKTSAIEAIPTAMAAFHP--------PQHHGS 168

Query: 121 RGAGRNYRGRG 132
           RG GR +   G
Sbjct: 169 RGRGRGFHSTG 170

[Close]

BLAST of Bhi06G000370 vs. ExPASy TrEMBL
Match: A0A5A7UX39 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 45/104 (43.27%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MLELRSALYTVKKEVVETVEQYFRKVKIFVDRVSAAGVTVDDEETLLHILNDLSIEYNAF 60
           +L+LRSALY++KK   E+++QY  ++K  VD++ AA V+++DEE L+H LN     +NAF
Sbjct: 76  ILDLRSALYSIKKNPFESIDQYTSRIKALVDKLVAASVSLEDEEILVHTLNGFPAVFNAF 135

Query: 61  QTSIRTRDTTLTLAELEVMLDVESKTIVVPSLAVKPTPTTMAAF 105
           +T IRTR   ++L EL  +L +  +T +  + A++  PT MAAF
Sbjct: 136 RTFIRTRSGNISLEELHTLL-ISEETTMAKTSAIEAIPTAMAAF 178

[Close]

BLAST of Bhi06G000370 vs. ExPASy TrEMBL
Match: A0A5D3DRG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 45/104 (43.27%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MLELRSALYTVKKEVVETVEQYFRKVKIFVDRVSAAGVTVDDEETLLHILNDLSIEYNAF 60
           +L+LRSALY++KK   E+++QY  ++K  VD++ AA V+++DEE L+H LN     +NAF
Sbjct: 76  ILDLRSALYSIKKNPFESIDQYTSRIKALVDKLVAASVSLEDEEILVHTLNGFPAVFNAF 135

Query: 61  QTSIRTRDTTLTLAELEVMLDVESKTIVVPSLAVKPTPTTMAAF 105
           +T IRTR   ++L EL  +L +  +T +  + A++  PT MAAF
Sbjct: 136 RTFIRTRSGNISLEELHTLL-ISEETTMAKTSAIEAIPTAMAAF 178

[Close]

BLAST of Bhi06G000370 vs. ExPASy TrEMBL
Match: A0A5A7T8B0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00680 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-13
Identity = 44/104 (42.31%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MLELRSALYTVKKEVVETVEQYFRKVKIFVDRVSAAGVTVDDEETLLHILNDLSIEYNAF 60
           +L+L SALYT+KK   E+++QY  ++K FVD+++AA +++++E  L+H LN L   ++AF
Sbjct: 134 ILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAAASISLENEGILVHTLNGLPAAFHAF 193

Query: 61  QTSIRTRDTTLTLAELEVMLDVESKTIVVPSLAVKPTPTTMAAF 105
           +TSIRTR   ++L EL  +L +  +T +  + A++  PT MAAF
Sbjct: 194 RTSIRTRSGNISLEELHTLL-ISEETTMTKASAIEAIPTAMAAF 236

The following BLAST results are available for this feature:

BLAST of Bhi06G000370 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000370 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZE5	1.2e-15	41.22	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BA30	2.6e-15	41.22	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UX39	1.4e-13	43.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DRG9	1.4e-13	43.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T8B0	4.1e-13	42.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..81 e-value: 2.2E-11 score: 43.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000370	Bhi06M000370	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity