Bhi06G000180 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000180
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RNA-binding protein 7-like isoform X1
Location	chr6: 4650284 .. 4655881 (-)
RNA-Seq Expression	Bhi06G000180
Synteny	Bhi06G000180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCACGAACAAAAATCTCCTCCACTTCTCTTTTTTCCCCCTCCCTCTGCTGAACCTTCCGGCCGTCAATCCCCTCCCAATCTGCTGTTTTTCTCTTCTCCGGCCAGCATTTCCAAGAGCAGCTCACGGGACTCCGGCGAATATCAACGATCGGCGGCGGCGTTTTTCCGAGCTTCTTCTGATTTACCCGTTCCTGGCGATTGGCGAGCTACACTAGCCCTCGTCGTCGACGGTGCTCGAACAGACGGCGACCCACACATCCATAGTTCTCCAGTGGCGCTGCACTGTGCCAAGTGACTCCTCTCCTGCAACCGACGCACAAACGAAACGCAGGCGGCCCATCAAACCCACGCAATCGGACTCGAAGCAACAGCGTTGTTAATCTCGGAGGTCAGCTTCGGCGACTGCCCACGCTTCAATCGGCCCTGAAACGGATTACCCATAGGCTGTGGTGGTCGATTTTTTGAAATCGAACACAATCATAACACTTTTCGAGTCCTCTTGGGTAAGATTTAGTGAGTGAGTACACCCTAAATTCCTTTCGAACTTGAATAAAGTGCTTTAGAATTGTCCCCAACACTTGGGAACTCTTGTTTGTAGAGACCGCGATATACAAATTTGGAATACTTATTGGAAATACGGTTGAAATACAAACCACAGTAGGAAAATCGAAATCGAAGCAATAATAAATAGACGTCTATCGAAATCGAAGCAATAATAAATAGACGTCTATTGGCTTACTCTCGTTGCCGTTTTCCTCTTTCTCTTTTATCCTTACCGTTCCTTTTTGCTTTCTGAAACTTCGGTCTAGGCATTTGCATCTGCACTTACAGAACAATCATGTCAGGAAGATCAAATGGATGCACCATATACGTTGGTATGTTTTTTTTTAAAATCACTATTCATCTTAATTCATGTTTTCTATTCTAATTCGTTGAACTCCTTCGTTTTCCTTTCACGAGGATTCTGTTTGCATTTTTTCTTCTGTGAAGTTTCCTATAAAAATATTATGCTTTTGTTGGGTGGTTGGTTTTATCGTAGTTGTGTTAAATTCTTGCTATCATGTTTTACTATTGGATGTATATGGCATATGATATATTTATCGATTCTCTCACAAAGCTATGTAGTTTTATTGGCGGGTTCATAATTGACCAAAAAGGATTGGGTTATTTGCTGGATTCCTTCCTCTCCAACTTTTTCCTCTCTTGTAATTTTTTTTTATCTCTCGTTATGGCATAATTGATTTGCTGCCTTTGGTTAATAGGGTTGAAACCTAACTTATTTTCTTTTTGTTTTCAATATATCTCTTAGATTATCTTCATTTTTTCTTTAACTGGTACTATCTAAATTTTCACTTTCACCATCGTCTTCAATCTACTTCAATGTGGGGTTTACCCCATTTGAGTATTGCTGCCAGTTTGTCTGTAATATTTCTTTAACATAACTGGTTGTTCAGTGAACGTACTCTTTTGGGGAACTTTTCTTCCCCTTTTATACTTTAACATGATCTATTAAATTTTAAGGATGCAGCCTGCCTACTTGAATTTTAGATGACACATTTTCTTCTGAATTTGATTTTGTTACTTCACTTTTTTTAGGTAATTTTGATGAAAGAGTAAGTGAAAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTTGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGTCATTTTATCTCTTTCTCAACGGAAAATTTTCATTTTATCTCCTTTTTTCTTGATGAGCTTGGTTTTCTAACTTACACACACACACACACACATATTTGCTTTATGATTCTGTATTCATGTTATATGCCATCTCCTCTAATTTGACACATTTTGATCAGTAAGTATTAAAATGTCTGGTGCATTTGAAACTTCAGACCTTTTTTTTTATCTTAAAATTTAATGAACTTAATAAAAAGTCAATGATTAAACAGTCTTGGAAGAATATATGATTTGATTTTTATGCCCAAGTTTAGGTGTTCTAAAATATATATTAACTAATGAAGTAATCTTTGTGATAAATTACAGTAGTCCAAAAATTGTATTCCTTCGTATGCCTTATGCAGTATATTGCATAACTTTTTTGAAGTTCTAGAAACTAGATTACAATCCAATTATATTAATTTTTCTTGTTATCATAATTAATTGATGGGAAGAACCAATATATTTGTGGCTCATGATAAATTTAATCTAGTTTAATGTATATCATCAGAATGTCAAATGACTTGGTTAGAAAGCTTTTGGCTTTCCAATTTTAGAGGATGAACATGAGCATTAGTTCATTATTGAAAAACAAAAAAGAAAAGGAAAACATAATTTGTTCACATCACTACTCTAATGACTCCAATAACTGTAGTCTGTTATCGAAGTTGGGAGAATGAAGGTAGATGCTTAAACATGAATAGAAAACCGAAACAAATCTAAATATATAATTTCATCTTTTTTAAGAAATGATATCTATTAGTTTTCTAAAAAGTGATGTCTGTACTGATTTTATAAATAGATAAGAACAGTATCAACAATGAAAAGCAAAACAGATATAAAGATTCCTTTTCCAATTATAGATGGTTTCCTTTGATATATTATTGTTTACTGGCAGTCTCGTTCCAATTTTATAATCAGATGATTGTGGGAAAAAACAAGATTGTGGAATCTTCTTGTATTAGCCTTGATTGTGTGGTGAGCTTTTTAGTTATTGAAATGACACATTGTTTTTGACTTTGTGCGAACAGGTATCTGGTCAAGACAAGCCTTCACCTGGTAGTAATGCAATCACTTCATCAAGTATATCTAATAAATCAAGGTCGCAGATTTTTTCAGGTTACTCTAATGAAATATCTCAATATTCCAATCGCTTTTCCACATCATGTAGGTTTACGACATATCCAGAGAACCATCTAGAAGGTGATTTTCCTTATTCTTTATAAGTCTTTGCTTTGTTAGTTTTGCTAAGAAATTGTGTATTTTTACTTTATTGGCCTTTCCCACATAGTTCAACAAACTTTTATTTCTTTTATTCAGCGCTTCTTTACCCTGGGTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAACTTTGGATAGCCTTAACCAACCTAAATCACGCCGTCGTGATACAAGTTTTCCAGTAGATTAACCACCTTACAAACTTTTGAACTAATGCAGCCAGTGCCTTCCATTTTGGAATCTGAATGGTAATACAAGTCTTAGGAAAAGTTGAACCTTTTAGATGGATGTAGAAGGATTGGTGGAAAATGTACCATATTTGCCATGGATCATGCTGGTTTTTGTTATGTAATGCATAGTAAATGCATAGTCATTCTATAGGAGTATGTGTTCATATGATTTGGCTGTGGTATTTTAAACTTATAGTTGATACTCTAACTAATTATTGTAATCTATTTTATTGAATATTCAGATTTTCTGTAATATTCATGTTTAGTGTTATGGAATTATAAATGGTGTTTTTATGGTGACTGAAAGGAATTGCTTTTGGCTTGTGTATATTGAGTATTTAGTTTTTTCTGATGTGCTTTACTTGAGTCAATACATAAATATTATAAACATTTTGGTTTTAATGAAGTGAGCTGGATTACATGTAAACCCATGCATTTTGGTTCGAGTTTATTGCCATTTCTGCGTTTGGACATGCCTGTACAGTTTAATTTTAAGGTATCGTCTAACTTTGCCCACCGACTTTTTGGAAACATTTTAAAAGTAGATTACAAAGAAAATTCATTGATTGTCATCAATCATAATTCTAAAAGCAGAAGAAAAATTGTTACTACGTTTTTGTGTTGTCCTTGTACTCTTATGGTTTTGAGACTTATGCTTCTTATATATCAAAATACGGCTTGATCCGAAATAAATGTATGGCATGCTTGAAATTTTCAAGACGTAATTTCTCTCATCTGGGCTCAAAAGTCCTATTGGAATTGCGAGTACAACATGAAGGTCGATCTGCTAACTACCTTAGAGTTATGATCTTTGATAGTTCTATTTGAAGTTGCCTTTTAGTTTTACTATTCTTTGTATCATAATATGGATTTGTTCATTTTCTTTTATTCTGCCCATTTGTATGTTTTGTGAAATCAAGGATGAAATATCGATGTCGGTATCGAGATTTTAGTTTTGCGGATATATCGATTTTGATGGATATTTCTATAAGTCACTAAATTTATAAAATTTATTTAGATTAATATTTAAGTTGTTTTTACTCCCATACTAATTTATAAATACTTTATTAGTATTCTTGTTCATATTGTAAAAAATAGATTATATTTTTTTAAATGTTTTACGAGTATTTATAAAAGATGTTGGAGATATCCATGGATATTTGATATCGATGTCGAGTCTTTCAATTTATGGATACGTTTATTTGTAAGTGTATGATAAATGGTCTTTCTTTGGCTGCCTTGTAAAGATTTGGGATAAATTGATATAGTCATAGTTTTAGAATTCAAAGACGTTGTACAACTTATAGAACAAATCTTATTCAAGTAGTCGTGATGTAGTCAATAGTTTTAGACTTTAGTTAGCAAGTAGTGTTAAGTGAAATCCTTTTGTATGGATAATAAAATCACTCTGTTTATAATCCAGCTTTAACAGAACCCATACTGAAGCATTTTGATTTTGTGGAATCACCAAGAATTTGAATTAAGGGAGGTTCTACAACTGTGATCAGTATAAGCATAGTTTACCATATAGAGGCCAAACTAACAATGCATCCAACAGCAATGATCTGTTTCTAGAATGCATTTCTAGATCTCTGTTCTAGAAAGCTATACAGGTAACAACAAAGGTGGTTTGACTGGGGCTTTCCTTTCATTACTTCTTTGGCAACGAGGGAACCGCGTCTGCATCTGCATCAAGTGGTGGAACGCACTCCTTAGCCGAATTGGTTGAAGGAGAGCGAAGAGGCGGCAACTCTCCTAATCCATCCCACGAGGAATGGTTTCTTGTGCAAATGCGGTTCGACTGGTGGCTTCCCTTTGATTAAATGTATATCTTCCATATAATTGTAACTAGAATTGTTTTTCTGCTTAACAAACCGACTTCAACGGGGTAGCAACCAGATGGTTGCGCTTGTAGAAAATCTAGAGCTGATATTGGTCATAAGAATGGGTTCAATGACTTGTCTAGATTTACATTGCGAACGGCAGGAGCTTCCAGACATAGTTGGGGATAGGGATGTACATGGGT

mRNA sequence

ATTTTCACGAACAAAAATCTCCTCCACTTCTCTTTTTTCCCCCTCCCTCTGCTGAACCTTCCGGCCGTCAATCCCCTCCCAATCTGCTGTTTTTCTCTTCTCCGGCCAGCATTTCCAAGAGCAGCTCACGGGACTCCGGCGAATATCAACGATCGGCGGCGGCGTTTTTCCGAGCTTCTTCTGATTTACCCGTTCCTGGCGATTGGCGAGCTACACTAGCCCTCGTCGTCGACGGTGCTCGAACAGACGGCGACCCACACATCCATAGTTCTCCAGTGGCGCTGCACTGTGCCAAGTGACTCCTCTCCTGCAACCGACGCACAAACGAAACGCAGGCGGCCCATCAAACCCACGCAATCGGACTCGAAGCAACAGCGTTGTTAATCTCGGAGGTCAGCTTCGGCGACTGCCCACGCTTCAATCGGCCCTGAAACGGATTACCCATAGGCTGTGGTGGTCGATTTTTTGAAATCGAACACAATCATAACACTTTTCGAGTCCTCTTGGGCATTTGCATCTGCACTTACAGAACAATCATGTCAGGAAGATCAAATGGATGCACCATATACGTTGGTAATTTTGATGAAAGAGTAAGTGAAAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTTGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATCTGGTCAAGACAAGCCTTCACCTGGTAGTAATGCAATCACTTCATCAAGTATATCTAATAAATCAAGGTCGCAGATTTTTTCAGGTTACTCTAATGAAATATCTCAATATTCCAATCGCTTTTCCACATCATGTAGGTTTACGACATATCCAGAGAACCATCTAGAAGCGCTTCTTTACCCTGGGTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAACTTTGGATAGCCTTAACCAACCTAAATCACGCCGTCGTGATACAAGTTTTCCAGTAGATTAACCACCTTACAAACTTTTGAACTAATGCAGCCAGTGCCTTCCATTTTGGAATCTGAATGCTTTAACAGAACCCATACTGAAGCATTTTGATTTTGTGGAATCACCAAGAATTTGAATTAAGGGAGGTTCTACAACTGTGATCAGTATAAGCATAGTTTACCATATAGAGGCCAAACTAACAATGCATCCAACAGCAATGATCTGTTTCTAGAATGCATTTCTAGATCTCTGTTCTAGAAAGCTATACAGGTAACAACAAAGGTGGTTTGACTGGGGCTTTCCTTTCATTACTTCTTTGGCAACGAGGGAACCGCGTCTGCATCTGCATCAAGTGGTGGAACGCACTCCTTAGCCGAATTGGTTGAAGGAGAGCGAAGAGGCGGCAACTCTCCTAATCCATCCCACGAGGAATGGTTTCTTGTGCAAATGCGGTTCGACTGGTGGCTTCCCTTTGATTAAATGTATATCTTCCATATAATTGTAACTAGAATTGTTTTTCTGCTTAACAAACCGACTTCAACGGGGTAGCAACCAGATGGTTGCGCTTGTAGAAAATCTAGAGCTGATATTGGTCATAAGAATGGGTTCAATGACTTGTCTAGATTTACATTGCGAACGGCAGGAGCTTCCAGACATAGTTGGGGATAGGGATGTACATGGGT

Coding sequence (CDS)

ATGTCAGGAAGATCAAATGGATGCACCATATACGTTGGTAATTTTGATGAAAGAGTAAGTGAAAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTTGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATCTGGTCAAGACAAGCCTTCACCTGGTAGTAATGCAATCACTTCATCAAGTATATCTAATAAATCAAGGTCGCAGATTTTTTCAGGTTACTCTAATGAAATATCTCAATATTCCAATCGCTTTTCCACATCATGTAGGTTTACGACATATCCAGAGAACCATCTAGAAGCGCTTCTTTACCCTGGGTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAACTTTGGATAGCCTTAACCAACCTAAATCACGCCGTCGTGATACAAGTTTTCCAGTAGATTAA

Protein sequence

MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQYSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQPKSRRRDTSFPVD

Homology

[Close]

BLAST of Bhi06G000180 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.2 bits (409), Expect = 4.3e-40
Identity = 98/186 (52.69%), Postives = 124/186 (66.67%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG SN CT+Y+GN DERVS+RVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQ 120
           IA+YAVKLFSGLV+L+NRTLKFA+SGQDK    S    +S    + +S  F         
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNS---ANSGHRARPQSLAFEHSDRAAYH 120

Query: 121 YSNRFSTSCRF--TTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLN 180
           +  RFS+      +  P ++ +    PG+ N     G+ L     EYS+R  G+ LDS+N
Sbjct: 121 HLERFSSQLISPPSPLPLDYTQEPPPPGVSN-----GASL-----EYSRRVLGSALDSIN 172

Query: 181 QPKSRR 185
             + RR
Sbjct: 181 HSRPRR 172

[Close]

BLAST of Bhi06G000180 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 32/88 (36.36%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 4   RSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R+   T+YVG  D ++SE +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHNRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of Bhi06G000180 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 24/70 (34.29%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 2   SGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG  +G  +YVGN    V +  L  +  + G+VV+  +  D++SG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of Bhi06G000180 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-07
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 6   NGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYA 65
           N   +YVG     ++E  L  +  Q G +VD+++ RDK +GK KGFAF  YE +     A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 66  VKLFSGLVNLHNRTLK 82
           V   +G + L  RT+K
Sbjct: 94  VDNLNGALVL-GRTIK 108

[Close]

BLAST of Bhi06G000180 vs. TAIR 10
Match: AT1G71800.1 (cleavage stimulating factor 64 )

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-07
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 2   SGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           S  S    ++VGN     +E  L +I  + G VV   +  D+E+GKPKG+ F EY+ EE 
Sbjct: 3   SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62

Query: 62  ANYAVK-LFSGLVNLHNRTLKFAVS--GQDK---PSPGSNAITSSSISNKSRSQI 111
           A  A + L S  +N     + FA +  G DK    S G   + S++   +S+ QI
Sbjct: 63  ALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQI 117

[Close]

BLAST of Bhi06G000180 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG  DE+VSE +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Bhi06G000180 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG  DE+VSE +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Bhi06G000180 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG  DE+VSE +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Bhi06G000180 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-13
Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  RSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIYVG  DE+VSE +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]

BLAST of Bhi06G000180 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-11
Identity = 33/99 (33.33%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 4   RSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R+   TIY+GN DE+V++ +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7   RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64  YAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSI 103
           YA ++ +  V L  + ++   + QD+   G N +  +++
Sbjct: 67  YACQILN-QVKLFGKPIRVNRASQDR---GVNTLIGANL 101

[Close]

BLAST of Bhi06G000180 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.0e-89
Identity = 173/192 (90.10%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQ 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPSP SNAITSS     SRSQI SGYSNEISQ
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSS-----SRSQIVSGYSNEISQ 120

Query: 121 YSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQP 180
           YSNRFS+SCRF TYPENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDS NQP
Sbjct: 121 YSNRFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQP 180

Query: 181 KSRRRDTSFPVD 193
           KSRR D+SFPVD
Sbjct: 181 KSRRHDSSFPVD 187

[Close]

BLAST of Bhi06G000180 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 163/191 (85.34%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GN DE+VS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQ 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPSPGSNAITSSS             S+EISQ
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSS------------RSHEISQ 120

Query: 121 YSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQP 180
           YSNRFS SCRF TYPENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDS NQP
Sbjct: 121 YSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQP 179

Query: 181 KSRRRDTSFPV 192
           KSRR D+SFP+
Sbjct: 181 KSRRHDSSFPM 179

[Close]

BLAST of Bhi06G000180 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.0e-82
Identity = 161/180 (89.44%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 13  GNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQYSNRFSTSCRFT 132
           VNLH RTLKFAVSGQDKPSP SNAITSS     SRSQI SGYSNEISQY+NRFS+SCRF 
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSS-----SRSQIVSGYSNEISQYTNRFSSSCRFP 222

Query: 133 TYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQPKSRRRDTSFPVD 192
           TYPENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDS NQPKSRR D+SFPVD
Sbjct: 223 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 277

[Close]

BLAST of Bhi06G000180 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.7e-82
Identity = 158/192 (82.29%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GN DERVS+RVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSS-ISNKSRSQIFSGYSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPSP S+AITSSS IS+KSRSQI  GYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQ 180
            YSNR S SCRF+ YPENHLEA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDS N 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRRDTSFPV 192
           PKSRR DTS+PV
Sbjct: 181 PKSRRHDTSYPV 192

[Close]

BLAST of Bhi06G000180 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.0e-82
Identity = 157/192 (81.77%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GN DERVS+RVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSS-ISNKSRSQIFSGYSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPSP S+AITSSS IS+KSRSQI  GYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQ 180
            YSNR S SCRF+ YPENH+EA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDS N 
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRRDTSFPV 192
           PKSRR DTS+PV
Sbjct: 181 PKSRRHDTSYPV 192

The following BLAST results are available for this feature:

BLAST of Bhi06G000180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	4.3e-40	52.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	2.4e-14	36.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	1.3e-07	34.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G47120.1	3.7e-07	38.16	RNA recognition motif (RRM)-containing protein	[more]
AT1G71800.1	8.1e-07	33.91	cleavage stimulating factor 64	[more]

BLAST of Bhi06G000180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	1.9e-13	39.51	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	1.9e-13	39.51	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	1.9e-13	39.51	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	9.7e-13	39.74	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	9.0e-11	33.33	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Bhi06G000180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAZ4	1.0e-89	90.10	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A0A0KXV1	1.7e-84	85.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]
A0A5A7T7S6	2.0e-82	89.44	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1I8J0	2.7e-82	82.29	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EX61	6.0e-82	81.77	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 2.9E-17 score: 73.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..81 e-value: 3.4E-14 score: 52.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.760482
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..91 e-value: 8.8E-19 score: 69.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..192
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..191
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..191
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000180	Bhi06M000180	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding