Bhi05G001594 (gene) Wax gourd (B227) v1

Overview
NameBhi05G001594
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic
Locationchr5: 58008196 .. 58009125 (+)
RNA-Seq ExpressionBhi05G001594
SyntenyBhi05G001594
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGAAGATCTAAACCTTATATCTCATTGGTCCATCCCTCATCCATAAGTCCGACAAATAAGATAAGATGATAAGAACACGTGGCAAACACCCAATTCCCCAAATTTTTTCTCGCTAAAATTAACTCTTCACATTTCTTTAGATTTCCCCTTCTCCCTCTCCAAAATTCCAGTTCCTCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCATACCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCGACAGCCACCACCGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCTTCTGTTCTAGCTCCATCATGGGTTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCTGACGACGAGTACGTGAAGGACACGAGCGAAGTGATAGGGAAGGTGAGAATGACGATCACAATGGACAGAAACGACCCGAATGTGGCAGCGGCAGTGGCGGAGCTTCGGGAAAGTTCGAATTTTTGGGTGGCTAAGTACAGGAAGGAGAAAGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGACATTATATTAGCTTTGGGCCGACGGCACCGATTCCGGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCAGAGAAAGCTCTGTTAAGAGGGAGATGAAAATTACGTGAGGCATTTTTCATTCTTTTTCACTTTGTATTTTTTTTTTTTTCTTCCTAAGTATTGGAATTTAATGTTTATGGGTTATGTAAGTATAGAATATGGGGATTCACAATTTGTGAATTTACAAGAGGGAAATATTCTAAACTTCGGTGATAAATGCTTCAAGATAAATACATTCTTGAGACTTTCTCGTAATATTTGATCTTTAATTCGACTTTTTTTTAAGTTCAA

mRNA sequence

AACAGAAGATCTAAACCTTATATCTCATTGGTCCATCCCTCATCCATAAGTCCGACAAATAAGATAAGATGATAAGAACACGTGGCAAACACCCAATTCCCCAAATTTTTTCTCGCTAAAATTAACTCTTCACATTTCTTTAGATTTCCCCTTCTCCCTCTCCAAAATTCCAGTTCCTCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCATACCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCGACAGCCACCACCGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCTTCTGTTCTAGCTCCATCATGGGTTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCTGACGACGAGTACGTGAAGGACACGAGCGAAGTGATAGGGAAGGTGAGAATGACGATCACAATGGACAGAAACGACCCGAATGTGGCAGCGGCAGTGGCGGAGCTTCGGGAAAGTTCGAATTTTTGGGTGGCTAAGTACAGGAAGGAGAAAGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGACATTATATTAGCTTTGGGCCGACGGCACCGATTCCGGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCAGAGAAAGCTCTGTTAAGAGGGAGATGAAAATTACGTGAGGCATTTTTCATTCTTTTTCACTTTGTATTTTTTTTTTTTTCTTCCTAAGTATTGGAATTTAATGTTTATGGGTTATGTAAGTATAGAATATGGGGATTCACAATTTGTGAATTTACAAGAGGGAAATATTCTAAACTTCGGTGATAAATGCTTCAAGATAAATACATTCTTGAGACTTTCTCGTAATATTTGATCTTTAATTCGACTTTTTTTTAAGTTCAA

Coding sequence (CDS)

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCATACCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCGACAGCCACCACCGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCTTCTGTTCTAGCTCCATCATGGGTTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCTGACGACGAGTACGTGAAGGACACGAGCGAAGTGATAGGGAAGGTGAGAATGACGATCACAATGGACAGAAACGACCCGAATGTGGCAGCGGCAGTGGCGGAGCTTCGGGAAAGTTCGAATTTTTGGGTGGCTAAGTACAGGAAGGAGAAAGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGACATTATATTAGCTTTGGGCCGACGGCACCGATTCCGGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCAGAGAAAGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Homology
[Close]
BLAST of Bhi05G001594 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-48
Identity = 98/134 (73.13%), Postives = 113/134 (84.33%), Query Frame = 0 

Query: 38  RRDFLSL--TASVLAPSWVLFPQSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S      +P  A+ D+EY+KDTS VI KVR T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]
BLAST of Bhi05G001594 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 24/98 (24.49%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 69  YVKDTSEVIGKVRMTITMD-RNDPNVAAAVAELRESSNFWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of Bhi05G001594 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 98/134 (73.13%), Postives = 113/134 (84.33%), Query Frame = 0 

Query: 38  RRDFLSL--TASVLAPSWVLFPQSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S      +P  A+ D+EY+KDTS VI KVR T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]
BLAST of Bhi05G001594 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 24/98 (24.49%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 69  YVKDTSEVIGKVRMTITMD-RNDPNVAAAVAELRESSNFWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of Bhi05G001594 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.9e-79
Identity = 159/169 (94.08%), Postives = 165/169 (97.63%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60
           MASPTLITPCTSKSQ+PFIPLKPKSTISAA T  TVRRR+FLSLTASVLAPS+VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+LRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Bhi05G001594 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 158/169 (93.49%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60
           MASPTLITPCTSKSQ+PFIPLKPKSTISAA T  TVRRRDFLSL+ASVLAPS+VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+LRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Bhi05G001594 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 158/169 (93.49%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60
           MASPTLITPCTSKSQ+PFIPLKPKSTISAA T  TVRRRDFLSL+ASVLAPS+VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+LRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Bhi05G001594 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 152/172 (88.37%), Postives = 159/172 (92.44%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATT---VRRRDFLSLTASVLAPSWVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAAAT TT    RRR+FLSLTASVLAPSWVLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKAL 120
            +PALASSD+EYVKDT+EVIGKVR TITMD+NDPNVAAAVAELRESSN WVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of Bhi05G001594 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 152/172 (88.37%), Postives = 159/172 (92.44%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATT---VRRRDFLSLTASVLAPSWVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAAAT TT    RRR+FLSLTASVLAPSWVLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKAL 120
            +PALASSD+EYVKDT+EVIGKVR TITMD+NDPNVAAAVAELRESSN WVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

The following BLAST results are available for this feature:
BLAST of Bhi05G001594 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03600.12.2e-4873.13photosystem II family protein [more]
AT1G05385.11.0e-0524.49photosystem II 11 kDa protein-related [more]
BLAST of Bhi05G001594 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LR643.1e-4773.13Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q9ZVZ91.5e-0424.49Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
BLAST of Bhi05G001594 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1S21.9e-7994.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1[more]
A0A5A7SR301.6e-7893.49Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3C1X21.6e-7893.49photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
A0A6J1HZH12.2e-7288.37photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O... [more]
A0A6J1GKW72.2e-7288.37photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 42..165
e-value: 1.2E-31
score: 109.9
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 43..165
score: 23.182676
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 64..169
e-value: 5.8E-39
score: 134.8
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001594Bhi05M001594mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071484 cellular response to light intensity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II