Bhi05G001487 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001487
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	glycine-rich protein 2-like
Location	chr5: 55882540 .. 55885983 (-)
RNA-Seq Expression	Bhi05G001487
Synteny	Bhi05G001487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCAACAAAATTTGTTATACTAATTACTTTACCAATTATCATTTACCACTGTAAAAGATGATAATAAAAACAAAATCCCAAAAACTGCAACGAAGATATTTTAGGAGTGAAATCCCAAAACTACCCTTGGCCGTTCGCAAATCCCACGGCGAGTTGCTCCATTCCAATGAAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCATTATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAGTACGTTTTTTTTCCCTTTCTTCTTATTATATATAAAAACCCTTTTTCTCTCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTGCAGTTGTTGGGTTTTCTTTGTTTGAGAGAAAAAAGATCGAGAAATGGCCGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGGAGCCTCGGCGTTGGTGAGGATGTTGAGTTTCTGATCGAAGCCGAGTCCGATGGCCGTTCCAAGGCCGTTGATGTCACTGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGCAGTGGAGGTGGAGGTGGTTACTCCAGCGGAGGAGGTGGGTATGGAGGAGGCGGCGGTGGTGGAAGAGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGCAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTACGGTGGTGGGGGTTACGGAGGAGGTGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGTCATATGGCTAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGTGGCGGTGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCAAGGGAGTGTCCAAGCAGTGGTCGTTGATCGCGTAAATTGATGAACTAGCAAGGCGATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTCCTTCGCCTTTCATCTCAGTTTTGATCTACTGAGGTCTGTAAGGTCATCTTTTAATAGGATTCGAGTAGCAGCTTTTTTTTTTTTTTTTTTGTCATCTATGGATTATCAGTTTAGTATCTGGTTTGACTATCTTTTGGGTGTTGGATGATTATGTTGGTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAAGAGATGATCTATGTGGGAAGTCTTCCTTTGATTACTCTGGTTCTTTAACTGTTGATACAAGTGTTTCGATCCATCTCTAAATTTCTTGTGTAAATTGAATATGGATTTTCATCTACTACTCTATACCCTTTTTTCTTTCCAGTTCATTTCAATTGAACATATCTCTTGATTGAATCAATGCCATGGGGACACTGCTTTTCTCCGCTTTGCTTTTTTTCCCTATGCAATTATTGTTGGAATGAGCAGAGACTGGGAAAGGGAAAAGGCAGGCTGGAAAGAAATAAAGTGGTTTCACTTTTGTGAAAGAGCTCTTTGTCCAATGTAGATGGATTTTGCAAACTGTGATAAAAAAAATTAATTGAAATTAGAAGCTTGTTTCCATTACTGCGCTCTAAATGCCCTTTAAAAGGATCCTGTTTATAGCAGTATTATTTATTATGGAAGATGCTAGTACTTCTAATTAAGAATTTGAATGGATGTTCAAAATAATCTTCCTGAAGGAAGAAGTAAAGGAGATTGCTTCATTTACTAGATTCACAGTTTCTTGTCTTTCCCACATTGTCCAAGAAAACCAAAGAATTAAACAAAGCAAAGCAAGTTTCTTTTTGGTGTAAAAGTTGAAAGCTTCTTCTCATGTTTTTTTTCCCTCCCACTGTGAAGCAGACTTATTATGAATACAAGAATTCTGAATCTCTTTGCTTTTTATTTACATTTTTCTGTTGTTTCCCATTGGTGAATTCTGAAAACTCTCGAGTAAACCCATATTTAGTTGGGGATGATTGTGATTATGGAAAAGCAGCTATATTTGCATCACTGGGGTGCAGGCAGGTTGTAAATTTTTAGATACAAAAATTTCTCAGCTTTTTTCTTTTTTAGGTACCATTAAAGAAGAGAGGCCCTACGCCAAAGTAAAAAGAGACAGAATAATAAGGATAATGTACTATTTTGGATGAAAAAGAGCGACATTCGCCAACTCTGAATTTTACCCCTCTTCTCTCTGTCTCTCTAATCAAACCAAAAGCTGCAGTACAGAGCAAAGAAAACACATCCCAATCACCCCTTTCCTTAACCGCAACAAATTCATCATTCTGCTACCTTCAATCATCAATGGTTGCCAGGATGGTGGAGGTGGTGCTGATGCTGTGGAGGTGGCGCCGCTGTAACATTGAGCAGAGACGGCGGCGATTGTGGTGGGCATTGGTAACACTTGGTGAAAAGCCCAAAAGTGTCGATTTGATGTACGAAATTGGTCACACTAGCCCACCCACCAAAACCAAACCCAACGACCAACACCCAAGCCACCACGAATGCGTTGATCACATATGCTCCGACCCATCTTCCGGTGAACTTCGGCGGTTGCTCCACCGCATTCTGCAATGACAAAAAGGTTCGTTCAGTCTCATCATAAACAGCCATTTGACATGTGGAAGGTGTCAAAAGGACTGTCACAGAACAGGGGTGGTGAGAATCAGGGTACGAACAGATACTCTGTCGCATCGCATGCATATGGCAGCAGCAAAGACAAAGAATCTCGTGCCTTTATCTTTTTCCCTTTTTTTCCCCCTCTCATCGTATTATGAAATGGACTTTTCTAGGAGAGGGCAATTCCAAAGACGATATCTTTTTCAAAAACCAATCGAAACTTTTTAAACCAACACTAAACTACTAAATTAATTAAACTAATACCAAAGACAAAGACATAGGAGAGTGAGCCGTTTCTTGTCTGCTAGACTGTGACCACACGTTACCAAAAAAAAACAACTCACAGTGAGAGAGAGAGAGTAACATTTCAGTGCGGCGTACCTCACGGGAAGCAGGCGATCGGAAGGTGAACATGTGGGCAAGAGCAGGAATGATGTAGACGGTGAAGCTAACGAGGAGAGATCCAACGGTGGAGTTGATAGGACCAAAGAAAGGGAAGATTATAGCCAAAAACCAAATGGGAATGACTACAGGCAATCTTGCAGCTGCCCTTTTGCACAAGCTCTTACATTCATGCATTCCAATGGCTTTCTCCCACACAAAGTAAAGAGGTGTGCAAGCAAATCCAAATGTGATGAACTGCAAGAATTACAAAGAAAG

mRNA sequence

CCCCAACAAAATTTGTTATACTAATTACTTTACCAATTATCATTTACCACTGTAAAAGATGATAATAAAAACAAAATCCCAAAAACTGCAACGAAGATATTTTAGGAGTGAAATCCCAAAACTACCCTTGGCCGTTCGCAAATCCCACGGCGAGTTGCTCCATTCCAATGAAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCATTATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAGTACGTTTTTTTTCCCTTTCTTCTTATTATATATAAAAACCCTTTTTCTCTCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTGCAGTTGTTGGGTTTTCTTTGTTTGAGAGAAAAAAGATCGAGAAATGGCCGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGGAGCCTCGGCGTTGGTGAGGATGTTGAGTTTCTGATCGAAGCCGAGTCCGATGGCCGTTCCAAGGCCGTTGATGTCACTGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGCAGTGGAGGTGGAGGTGGTTACTCCAGCGGAGGAGGTGGGTATGGAGGAGGCGGCGGTGGTGGAAGAGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGCAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTACGGTGGTGGGGGTTACGGAGGAGGTGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGTCATATGGCTAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGTGGCGGTGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCAAGGGAGTGTCCAAGCAGTGGTCGTTGATCGCGTAAATTGATGAACTAGCAAGGCGATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTCCTTCGCCTTTCATCTCAGTTTTGATCTACTGAGGTCTGTAAGGTCATCTTTTAATAGGATTCGAGCGATCGGAAGGTGAACATGTGGGCAAGAGCAGGAATGATGTAGACGGTGAAGCTAACGAGGAGAGATCCAACGGTGGAGTTGATAGGACCAAAGAAAGGGAAGATTATAGCCAAAAACCAAATGGGAATGACTACAGGCAATCTTGCAGCTGCCCTTTTGCACAAGCTCTTACATTCATGCATTCCAATGGCTTTCTCCCACACAAAGTAAAGAGGTGTGCAAGCAAATCCAAATGTGATGAACTGCAAGAATTACAAAGAAAG

Coding sequence (CDS)

ATGGCCGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGGAGCCTCGGCGTTGGTGAGGATGTTGAGTTTCTGATCGAAGCCGAGTCCGATGGCCGTTCCAAGGCCGTTGATGTCACTGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGCAGTGGAGGTGGAGGTGGTTACTCCAGCGGAGGAGGTGGGTATGGAGGAGGCGGCGGTGGTGGAAGAGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGCAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTACGGTGGTGGGGGTTACGGAGGAGGTGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGTCATATGGCTAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGTGGCGGTGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCAAGGGAGTGTCCAAGCAGTGGTCGTTGA

Protein sequence

MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGNCYSCGESGHFARECPSSGR

Homology

[Close]

BLAST of Bhi05G001487 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-39
Identity = 123/210 (58.57%), Postives = 141/210 (67.14%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 62
           +R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  SKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGG 122
            KA++V+GP  A VQ     G+ GGGG S G GG+GGGGG G G RGGG Y         
Sbjct: 73  PKAIEVSGPDGAPVQ-----GNSGGGGSSGGRGGFGGGGGRG-GGRGGGSY--------- 132

Query: 123 GRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGGDRYGG 182
                   GGGYGG G GG GGGGG  +CFKCGE GHMAR+C Q G      GGG RYG 
Sbjct: 133 --------GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGS 192

Query: 183 GGGGGG-----NCYSCGESGHFARECPSSG 204
           GGGGGG     +CYSCGESGHFAR+C S G
Sbjct: 193 GGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of Bhi05G001487 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-39
Identity = 126/221 (57.01%), Postives = 143/221 (64.71%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 62
           ER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  SKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGG 122
            KA+DV+GP  A VQG+ GGGS G      G GG+GGG GGGR            GSG  
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSG------GRGGFGGGRGGGR------------GSG-- 128

Query: 123 GRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQ--------SGSQGGGD 182
             GGYGGGGGGYG    G GGGG GG  C+KCGE GHMARDC +         G  GGG 
Sbjct: 129 --GGYGGGGGGYG----GRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG 188

Query: 183 RYG-----------GGGGGGGNCYSCGESGHFARECPSSGR 205
            YG           GGGGGGG+CYSCGESGHFAR+C S GR
Sbjct: 189 GYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of Bhi05G001487 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-19
Identity = 111/215 (51.63%), Postives = 133/215 (61.86%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           A R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG 67

Query: 62  RSKAVDVTGPGEASVQGSRGGGSGGGGG-YSSGGGGYGG----GGGGGRGRRGGGGYGFN 121
           ++KA++VT PG  S+        G GG  ++ G  G+      GG GG+   GGGG    
Sbjct: 68  KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGG---- 127

Query: 122 GGSGGGGRGGYGGGGGGYG-----GGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQG 181
             SGG G     G  G +       GG   GGGGGGG  C+ CGE GH+A+DC + GS  
Sbjct: 128 RRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS-- 187

Query: 182 GGDRYGGGGG---GGGNCYSCGESGHFARECPSSG 204
           GG+RYGGGGG   GG  CY CG  GHFAR+C  +G
Sbjct: 188 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of Bhi05G001487 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-16
Identity = 105/213 (49.30%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           A R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67

Query: 62  RSKAVDVTGPGEASVQ---GSRGGGS--GGGG---------GYSSGGGGYGGGGGGGRGR 121
           ++KAV+VT PG  S++    SRG G+  GGGG         G+ S   G GGGGGGG  R
Sbjct: 68  KTKAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR 127

Query: 122 -RGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQ 181
            RGG G    G +G   R     G G   G   GG  G      C+ CG+ GH+ARDC Q
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG------CYTCGDVGHVARDCTQ 187

Query: 182 SGSQGGGDRYGGGGGGGGNCYSCGESGHFAREC 200
             S G GD+ G   GG   CY+CG+ GHFAR+C
Sbjct: 188 K-SVGNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

[Close]

BLAST of Bhi05G001487 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.8e-50
Identity = 145/208 (69.71%), Postives = 157/208 (75.48%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 62
           +R  G VKWFSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  DGR
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 63  SKAVDVTGPGEASVQGSRGGGSG----GGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGG 122
           +KAVDVTGP  A+VQG RGGG G    GGGGY  G GGYGGGG GG    GGG  G+ GG
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 123 SGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-- 182
            G GG   YGGGGGGYGGGG  GGGG GGG  CFKCGE+GH ARDC QSG  GGG R+  
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGG 186

Query: 183 GGGGGGGGNCYSCGESGHFARECPSSGR 205
           GGGGGGGG CY CGE GHFAREC S GR
Sbjct: 187 GGGGGGGGGCYKCGEDGHFARECTSGGR 214

[Close]

BLAST of Bhi05G001487 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 123/210 (58.57%), Postives = 141/210 (67.14%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 62
           +R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  SKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGG 122
            KA++V+GP  A VQ     G+ GGGG S G GG+GGGGG G G RGGG Y         
Sbjct: 73  PKAIEVSGPDGAPVQ-----GNSGGGGSSGGRGGFGGGGGRG-GGRGGGSY--------- 132

Query: 123 GRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGGDRYGG 182
                   GGGYGG G GG GGGGG  +CFKCGE GHMAR+C Q G      GGG RYG 
Sbjct: 133 --------GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGS 192

Query: 183 GGGGGG-----NCYSCGESGHFARECPSSG 204
           GGGGGG     +CYSCGESGHFAR+C S G
Sbjct: 193 GGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of Bhi05G001487 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.1e-38
Identity = 126/221 (57.01%), Postives = 143/221 (64.71%), Query Frame = 0


Query: 3   ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 62
           ER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  SKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGG 122
            KA+DV+GP  A VQG+ GGGS G      G GG+GGG GGGR            GSG  
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSG------GRGGFGGGRGGGR------------GSG-- 128

Query: 123 GRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQ--------SGSQGGGD 182
             GGYGGGGGGYG    G GGGG GG  C+KCGE GHMARDC +         G  GGG 
Sbjct: 129 --GGYGGGGGGYG----GRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG 188

Query: 183 RYG-----------GGGGGGGNCYSCGESGHFARECPSSGR 205
            YG           GGGGGGG+CYSCGESGHFAR+C S GR
Sbjct: 189 GYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of Bhi05G001487 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 111/215 (51.63%), Postives = 133/215 (61.86%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           A R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG 67

Query: 62  RSKAVDVTGPGEASVQGSRGGGSGGGGG-YSSGGGGYGG----GGGGGRGRRGGGGYGFN 121
           ++KA++VT PG  S+        G GG  ++ G  G+      GG GG+   GGGG    
Sbjct: 68  KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGG---- 127

Query: 122 GGSGGGGRGGYGGGGGGYG-----GGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQG 181
             SGG G     G  G +       GG   GGGGGGG  C+ CGE GH+A+DC + GS  
Sbjct: 128 RRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS-- 187

Query: 182 GGDRYGGGGG---GGGNCYSCGESGHFARECPSSG 204
           GG+RYGGGGG   GG  CY CG  GHFAR+C  +G
Sbjct: 188 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of Bhi05G001487 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-15
Identity = 105/213 (49.30%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 2   AERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           A R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67

Query: 62  RSKAVDVTGPGEASVQ---GSRGGGS--GGGG---------GYSSGGGGYGGGGGGGRGR 121
           ++KAV+VT PG  S++    SRG G+  GGGG         G+ S   G GGGGGGG  R
Sbjct: 68  KTKAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR 127

Query: 122 -RGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQ 181
            RGG G    G +G   R     G G   G   GG  G      C+ CG+ GH+ARDC Q
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG------CYTCGDVGHVARDCTQ 187

Query: 182 SGSQGGGDRYGGGGGGGGNCYSCGESGHFAREC 200
             S G GD+ G   GG   CY+CG+ GHFAR+C
Sbjct: 188 K-SVGNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

[Close]

BLAST of Bhi05G001487 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 201/213 (94.37%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSR-----GGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGF 120
           GRSKAVDVTGPGEASVQGSR     GGG+GGGGGYSS GGGYGGGGGGGRGRRGGGGYGF
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSS-GGGYGGGGGGGRGRRGGGGYGF 120

Query: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGD 180
           NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGD
Sbjct: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGD 180

Query: 181 RY---GGGGGGGGNCYSCGESGHFARECPSSGR 205
           RY   GGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 RYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of Bhi05G001487 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 186/196 (94.90%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGSGGGGGYSSG---GGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYG 131
           GEASVQGSRGGG GGGGG   G   GGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGYG
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 132 GGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGNCYS 191
           GGGGGYGGGGY GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY GGGGGGGNCYS
Sbjct: 121 GGGGGYGGGGY-GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-GGGGGGGNCYS 180

Query: 192 CGESGHFARECPSSGR 205
           CGESGHFARECPSSGR
Sbjct: 181 CGESGHFARECPSSGR 194

[Close]

BLAST of Bhi05G001487 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.2e-73
Identity = 184/209 (88.04%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSG 120
           GRSKAVDVTGPGE+SVQGSRGGG GGGG Y  GGGG  GGGGGGRGRR  GGYGFNGGSG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRR--GGYGFNGGSG 120

Query: 121 GGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY---- 180
           GGGRG YGG GGG  GGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY    
Sbjct: 121 GGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGG 180

Query: 181 -GGGGGGGGNCYSCGESGHFARECPSSGR 205
            GGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 GGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of Bhi05G001487 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.5e-72
Identity = 183/205 (89.27%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSG 120
           GRSKAVDVTGPGE+SVQGSRGGG GGGG Y  GGGG  GGGGGGRGRR  GGYGFNGGSG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRR--GGYGFNGGSG 120

Query: 121 GGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-GGG 180
           GGGRG YGG GGG  GGGY G GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY GGG
Sbjct: 121 GGGRGSYGGSGGGGYGGGY-GSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGG 180

Query: 181 GGGGGNCYSCGESGHFARECPSSGR 205
           GGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 GGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of Bhi05G001487 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.0e-64
Identity = 165/205 (80.49%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M+ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSG 120
           GR KA+DVTGPGE+SVQGSRGG               GGGGGG RG R GGGYGFNGG G
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGG---------------GGGGGGERGSR-GGGYGFNGG-G 120

Query: 121 GGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-GGG 180
           GGGRGGYG GGGGY        GGGGGGG CFKCGETGHMARDCYQ GSQGGGDRY GGG
Sbjct: 121 GGGRGGYGRGGGGY--------GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGG 180

Query: 181 GGGGGNCYSCGESGHFARECPSSGR 205
           GGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 181 GGGGGNCYSCGESGHFARDCQSSGR 180

The following BLAST results are available for this feature:

BLAST of Bhi05G001487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	1.0e-39	58.57	glycine-rich protein 2B	[more]
AT4G38680.1	2.9e-39	57.01	glycine rich protein 2	[more]
AT2G17870.1	1.2e-19	51.63	cold shock domain protein 3	[more]
AT4G36020.1	2.1e-16	49.30	cold shock domain protein 1	[more]

BLAST of Bhi05G001487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	2.8e-50	69.71	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	1.4e-38	58.57	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	4.1e-38	57.01	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	1.6e-18	51.63	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	2.9e-15	49.30	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of Bhi05G001487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4M5	1.4e-81	94.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A1S3BIY4	1.1e-73	94.90	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1JLC0	9.2e-73	88.04	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A6J1ERG9	3.5e-72	89.27	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1GLV7	2.0e-64	80.49	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 43..61 score: 40.8 coord: 28..37 score: 64.04 coord: 7..22 score: 63.69
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 1.3E-24 score: 85.8
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 31.374826
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 2.75552E-26 score: 94.1825
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 150..166 e-value: 1.4E-5 score: 34.5 coord: 185..201 e-value: 2.2E-5 score: 33.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 150..164 e-value: 2.3E-7 score: 30.6 coord: 185..201 e-value: 1.5E-7 score: 31.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 186..201 score: 11.284516
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 151..164 score: 11.053757
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 6.1E-23 score: 92.2
None	No IPR available	GENE3D	2.40.50.140		coord: 1..81 e-value: 4.9E-28 score: 99.1
None	No IPR available	GENE3D	4.10.60.10		coord: 146..175 e-value: 1.9E-7 score: 32.6 coord: 181..204 e-value: 3.9E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..87
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..131 coord: 121..204
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..131 coord: 121..204
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..70
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 141..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001487	Bhi05M001487	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding