Bhi05G001336 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001336
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr5: 52211803 .. 52216492 (+)
RNA-Seq Expression	Bhi05G001336
Synteny	Bhi05G001336

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATAAAAAAGACCATTTTAAGATGGAGAGAGAAAAATCGTGGATGAAGAAAGAAATAGAATAGACGCTGGAGGGACTTCGCCGGAGAGATAGAGATCTACGATGAGTTTCTTAATAAGGCCTCCGTCGCCGACGATTCTCAGTCCGTCGTACAAGTTACTGAGCTCTGGGGGGGAAGCATCCTGCCTGCTACTAGGCAGGGCGGAGGGATATCGGAAAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGAAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAACGAAGAAAGATTTACAACAACTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTAAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATGCCTCTGCACTCGACTTTTATGTTTATCTGTATGTTTGATTGATTAGTAATCGGACTTCTTCTATGTTGCATGATCTTATCGATTTTAGAGGTATCCACAGCAATGGCGAGATATAGATTTTTGCTTATTGTAATTCCTTCAATATTCCTTGCTGATATTCTGTATTACTTCACTTTCGATTTACGAGTATTAGGTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTAGAGTATTGGCTAGCAATGGATTGTTCGAACGAGTACAAATCATTCATTCGTACTTGAAAGCAGAAACTGACTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCCTTGGTTAGTCATAATTTAGGTGAACTTGCAATGGAGTCGTATTACTTGATGAAAGAAATAGGTTGTGAGCCAGATAAGGCTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAAAGGGAGAAGCAGTTGATTTAAGAACTGTGAAGCAGGACGCACAAAAGCTTTACGGTGAATCACTTGAGTTTTTAGAGGAGGAAGAAGAGGCAGCTATTGCCATATCTACGCACTGAGCTGCAGAATCAGGATTCAAATCATGGAATAGAAGGCATATACATTATACAGATGGACTTGTGGCAAGAAAGATGGAGTTCATCTTTGTTTCTACTTGAAGAAACCTGAAAAGGCTCAGAAACTTTCCCTGGATATGAATTTTAACTGTATACTGGCTCAAGTCAACCCGTCCTTAGCAGAGAATATGTGTGATAACTTTCGAGTTATGTTTCAACTTGGATATATTGACACTAGTTGGATGAATTGTATCAATTTACTCTCGTCCTCGATCTTTTGCTTCGGTTTCTCAAGCTGCTGGGATCCAGAAACTTCCCTGCCCTGCTTGGCAGTGTCACTAGTCTATGCAGGGAAGACCTGATCATCTTGCTACATACTTCAGCTCCTCCGTCGAGTCGTGAGCATGAGACAGAAATATAAGGGGAAAAGGTGGACTATAATGCAAGGTGAATGGTACATGATTTCCTTTTTCTCCCAAGAGTATCAAAATCTACGTAGAGTAGATAACGAACAAACCGGATTCGGGGATTGCTGCATAATTTCTGTAAAAACATATATGGTAAAGACGAAAATTATGTGGGCTCTACGCCTAGACTGCTAATTTTGTGCAACCTGATTCCGATGTGTGTTTTTCCCATCATGAGATTCAACATGCCAGTATAATTATGTTCAAGTTTCTAGTTATATTCTATATAGGCCTAAAATTTTGATTCCAATTCCTTAGTTACATAAAGATTTCAAAATTGTTTCCCTTCAAATGTCTGCCCAAACTGCCAGTTTCCAGGTGCAACGCTATAGGAAGTAAGTGCTCTTCCACTGCTAGAGGTAACTTCAAAAGAGAGAGGTTGCCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTCCTTGCCAATGGTATCCATCCTGTTCTTGATCCTTTTACTTTCACTGCCACTAATTCACCATCCATTCCAACATTTGTGATCAGAACTTGAAAGAATCGAGAATTCCCACTGACTGTGAATCTCATTCCACCATTTCTGTCACACCTCACCCTACACAAATATTAAACAAGCATTTTCCCCTTAGGATGGCAAATTGTTTGAATCTATAAGCATTTAGATTGATTTTACCTCCTATATTGAACTGGCACAATATCTGCTTTTTTCTCCGCTATTTCAGCAAATGCTGCTTCTGACATCTCGAAGTGTTCCTTGGGAAAATTACACCAACCACCATATTCCGAAGACAAGCCGTAATTGGGAGGACAGAAGTCAGTGGCCGTTAGAATGACAGTCGGGCTTCCTTGCAAACACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGGTACTCCCTCTATTAAACATCATGCTACTCAGTCCAGCGCTATATTTTCCATAGCTTACCTTATGCAGATCTCCATAACCACAAGCACCTTCTGCAACATTAGTAAAACCAAAAAAAAAAAAAAAAAAACACTTGAAATGCCAATTTCCATTCGTTTTGGTTGCATTATTATAAACATGATAGTTGATAGGTGCATGTTTGGAAATGATGTTAATACCACTTCTTCCATGTGAAAAATCACTGCAAACCATATATTTAGTCCATGTTTGGAAATGATTTCGAAAGGGTTAAAATCACTCCAAATTCTTTAAACACTTAAAATCAATTCAATGTTTAATTTATACTTTTTAAAGTAATTTTCATATATTAATATTGATTTTAAATGATTAAAAAGGACTTGCAAGTAATTTTGAAAATGACAGAGTTATTTTATTCATTTTCAAAATCACTCCCAGTCCCAAACATACTCTTAATAATTCAAAATCCATTTAATGTTCGATTTTACACTTTTATTCACAATTTTTACCTTTACCATTGATTTTGAATTGTTAAAAGCATGTTTTGGAGTGATTTTGAGTATGACAAAAATGATTATAACATTTGTAAACCACTCTCAAACATGTCCTAACAGGATCGTTAAGGTCACGATTGTCAGTTTCCACCTTCTGAAGGTGGGAGATTCCTTAAACAAAATCCCCCACAGCCTGTGAGCAGTACGAAAACTCTTGAATGCTCAAATAGCAACTAGAAAAATGACCTTTTTCAAACCCAGAAAAGCACCATGTTTAAACATTAATGTAATTTCATGAACAAAGGAAAACGGTACCTGTAACAATTGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCTTCATCCTTAGCCGCAAATATGTTGGTGGGTGTTTGCAGAAGAACTAAATAGTAGACTATTATAGCTAAAAAGGCCGCCATTTCAGAAGAATACAAGGCCTTGAAGAAGCCTATGCTCAAATGAGGTATATTTCCTTTAGAATTTTGATTTTTTTTTTTTTTCCCTTTTCCACCCTTTAAGAAAAGCTCCTCTCTGCCTTCTTTTTCAGCATTCCCCTAATTTATCGTTGAAATGAAAGCAAGCTCCTTTGATTGCCGGAACACTATTCTGGAAAAAAAAATAGAATAAACTTTGACAAATCTCCAATTTTGTAGCCCTTCGTTCACATTGGTGGCGCGTTTAACGAGGCAAAGGACTGTTCTTTATCTTCCGATAATGGGGCCTGAGGGCTTCAGAGAAGCAAATTTGGAGCCTTCATTTTTTGCCATTATTGATGTGGGAGGGCTTGAAGCTTTATGTCAATGGCGGCAGAGACAGAGCGGAAAGCCATCCATAGAAGCAGGTATGTGTTTCTTTTATTTGAACTTTTAAGATCCCTTGAAAATGAAATAAAAGAATAAAAAGAAGCTGAAGCACTTAATAAATGATTTTAAGAAGAACCCAGAACTCAGAAGTGGCCTATTTTGGATTTGATTGTTGGACCCGAACGAGTTTTAAAAGAGGATTTCTTTTAGTCTTATGGCTCATCTTTTCATGACAAAAAAGATAGTGGATGTTCCTTAAAAATAAATATAAAGAAAAAGAAAATTAGTGGATGGGTCCCAGAGTTGGAAGGGGTTGCCGGGTAATGAAGAAGCCGTTCTCTTGGCGGGAAACGGTGCTGGGGGGTTTTATGATTATTATTATTAGTTTAAACATCATTTTGGTCGAGAATTTTGCATAGAAACCCTTTCTCGATCCTCTAAATGATTAATGACTCATCCCTCACAAACATAAAAAATCTTATTTTATGCTTATGCCATAGTATATTAACGCATTTTATAACATTCGCATTAGGGATAATTATGTCTATTGTAACCCTAATGCGGTAACCATGTTTATGACAATCTTTATTTTTCTTCATTCCACCCTAATATTTATAGAGAAACATGATAAAATATGGAAAAAAAAAATGAAGATCACAATAGATATGCTCATCATTTTAAAGTTATGATACACATGATCATCCCTAACGCTATTTTCAAACACTGCTAGTGCATTCTAACATAAGTATAAGTTAGATTTTATATGCATGTTGGTGTGGGCTATTAATCATAAAGGCG

mRNA sequence

GAAAAATAAAAAAGACCATTTTAAGATGGAGAGAGAAAAATCGTGGATGAAGAAAGAAATAGAATAGACGCTGGAGGGACTTCGCCGGAGAGATAGAGATCTACGATGAGTTTCTTAATAAGGCCTCCGTCGCCGACGATTCTCAGTCCGTCGTACAAGTTACTGAGCTCTGGGGGGGAAGCATCCTGCCTGCTACTAGGCAGGGCGGAGGGATATCGGAAAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGAAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAACGAAGAAAGATTTACAACAACTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTAAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTAGAGTATTGGCTAGCAATGGATTGTTCGAACGAGTACAAATCATTCATTCGTACTTGAAAGCAGAAACTGACTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCCTTGGTTAGTCATAATTTAGGTGAACTTGCAATGGAGTCGTATTACTTGATGAAAGAAATAGGTTGTGAGCCAGATAAGGCTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAAAGGGAGAAGCAGTTGATTTAAGAACTGTGAAGCAGGACGCACAAAAGCTTTACGGTGAATCACTTGAGTTTTTAGAGGAGGAAGAAGAGGCAGCTATTGCCATATCTACGCACTGAGCTGCAGAATCAGGATTCAAATCATGGAATAGAAGGCATATACATTATACAGATGGACTTGTGGCAAGAAAGATGGAGTTCATCTTTGTTTCTACTTGAAGAAACCTGAAAAGGCTCAGAAACTTTCCCTGGATATGAATTTTAACTGTATACTGGCTCAAGTCAACCCGTCCTTAGCAGAGAATATGTGTGATAACTTTCGAGTTATGTTTCAACTTGGATATATTGACACTAGTTGGATGAATTGTATCAATTTACTCTCGTCCTCGATCTTTTGCTTCGGTTTCTCAAGCTGCTGGGATCCAGAAACTTCCCTGCCCTGCTTGGCAGTGTCACTAGTCTATGCAGGGAAGACCTGATCATCTTGCTACATACTTCAGCTCCTCCGTCGAGTCGTGAGCATGAGACAGAAATATAAGGGGAAAAGGTGGACTATAATGCAAGTTTCCAGGTGCAACGCTATAGGAAGTAAGTGCTCTTCCACTGCTAGAGGTAACTTCAAAAGAGAGAGGTTGCCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTCCTTGCCAATGCAAATGCTGCTTCTGACATCTCGAAGTGTTCCTTGGGAAAATTACACCAACCACCATATTCCGAAGACAAGCCGTAATTGGGAGGACAGAAGTCAGTGGCCGTTAGAATGACAGTCGGGCTTCCTTGCAAACACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGTAGCAGATTTCCACTCTTCTTCATCCTTAGCCGCAAATATGTTGGTGGGTGTTTGCAGAAGAACTAAATAGTAGACTATTATAGCTAAAAAGGCCGCCATTTCAGAAGAATACAAGGCCTTGAAGAAGCCTATGCTCAAATGAGCCCTTCGTTCACATTGGTGGCGCGTTTAACGAGGCAAAGGACTGTTCTTTATCTTCCGATAATGGGGCCTGAGGGCTTCAGAGAAGCAAATTTGGAGCCTTCATTTTTTGCCATTATTGATGTGGGAGGGCTTGAAGCTTTATGTCAATGGCGGCAGAGACAGAGCGGAAAGCCATCCATAGAAGCAGGTATGTGTTTCTTTTATTTGAACTTTTAAGATCCCTTGAAAATGAAATAAAAGAATAAAAAGAAGCTGAAGCACTTAATAAATGATTTTAAGAAGAACCCAGAACTCAGAAGTGGCCTATTTTGGATTTGATTGTTGGACCCGAACGAGTTTTAAAAGAGGATTTCTTTTAGTCTTATGGCTCATCTTTTCATGACAAAAAAGATAGTGGATGTTCCTTAAAAATAAATATAAAGAAAAAGAAAATTAGTGGATGGGTCCCAGAGTTGGAAGGGGTTGCCGGGTAATGAAGAAGCCGTTCTCTTGGCGGGAAACGGTGCTGGGGGGTTTTATGATTATTATTATTAGTTTAAACATCATTTTGGTCGAGAATTTTGCATAGAAACCCTTTCTCGATCCTCTAAATGATTAATGACTCATCCCTCACAAACATAAAAAATCTTATTTTATGCTTATGCCATAGTATATTAACGCATTTTATAACATTCGCATTAGGGATAATTATGTCTATTGTAACCCTAATGCGGTAACCATGTTTATGACAATCTTTATTTTTCTTCATTCCACCCTAATATTTATAGAGAAACATGATAAAATATGGAAAAAAAAAATGAAGATCACAATAGATATGCTCATCATTTTAAAGTTATGATACACATGATCATCCCTAACGCTATTTTCAAACACTGCTAGTGCATTCTAACATAAGTATAAGTTAGATTTTATATGCATGTTGGTGTGGGCTATTAATCATAAAGGCG

Coding sequence (CDS)

ATGAGTTTCTTAATAAGGCCTCCGTCGCCGACGATTCTCAGTCCGTCGTACAAGTTACTGAGCTCTGGGGGGGAAGCATCCTGCCTGCTACTAGGCAGGGCGGAGGGATATCGGAAAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGAAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAACGAAGAAAGATTTACAACAACTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTAAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTAGAGTATTGGCTAGCAATGGATTGTTCGAACGAGTACAAATCATTCATTCGTACTTGA

Protein sequence

MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVSKMLEMNTGTSLRSRCMLILLEYWLAMDCSNEYKSFIRT

Homology

[Close]

BLAST of Bhi05G001336 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-19
Identity = 57/90 (63.33%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKR---------------TKKDLQQLDRVYD 99
           + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKR               T      LDRV  
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546

Query: 100 SKIRRLLKFDMMAVLRELLRQNECSLALKV 115
           SK RRLLKFDM+AVLRELLRQNECSLALKV
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALKV 576

[Close]

BLAST of Bhi05G001336 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-09
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKR  +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVSKML 119
           RQ+ C+LA+ V   L
Sbjct: 94  RQDYCTLAVHVLSTL 107

[Close]

BLAST of Bhi05G001336 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVSKMLE 120
            +LA+K+ ++++
Sbjct: 123 TALAIKMFEVIQ 134

[Close]

BLAST of Bhi05G001336 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-08
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKR  +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVSKML 119
           RQ+ C+LA+ V   L
Sbjct: 94  RQDYCTLAVHVLSTL 107

[Close]

BLAST of Bhi05G001336 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-05
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVSKMLE 120
            +LA+K+ ++++
Sbjct: 123 TALAIKMFEVIQ 134

[Close]

BLAST of Bhi05G001336 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.5e-43
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60
           MSFL   PS TILSP Y LL SGG+ S L LGR EGYR+VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 115
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 114

[Close]

BLAST of Bhi05G001336 vs. ExPASy TrEMBL
Match: A0A6J1GL50 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455325 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.5e-43
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60
           MSFL   PS TILSP Y LL SGG+ S L LGR EGYR+VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 115
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 114

[Close]

BLAST of Bhi05G001336 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 99/114 (86.84%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60
           MSFL  P SPTI SP  K  SS G A CL LGRAEGY +VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 115
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKV
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKV 114

[Close]

BLAST of Bhi05G001336 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.8e-42
Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60
           MSFL+  PSPTILSP  KL SS  +  CL LGRAEGY +VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 115
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKV
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKV 114

[Close]

BLAST of Bhi05G001336 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.8e-42
Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60
           MSFL+  PSPTILSP  KL SS  +  CL LGRAEGY +VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKV 115
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKV
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKV 114

The following BLAST results are available for this feature:

BLAST of Bhi05G001336 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	5.7e-19	63.33	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G27750.1	3.1e-09	50.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G46870.1	1.4e-06	41.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Bhi05G001336 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	4.4e-08	50.67	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9STF9	2.0e-05	41.67	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Bhi05G001336 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HX85	2.5e-43	87.72	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GL50	2.5e-43	87.72	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0K6A9	2.2e-42	86.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1	[more]
A0A5D3CCT4	2.8e-42	86.84	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UZI6	2.8e-42	86.84	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..150 e-value: 2.7E-15 score: 58.4
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 18..115
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 18..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001336	Bhi05M001336	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding