Bhi05G001314 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001314
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RRP15-like protein
Location	chr5: 51423675 .. 51424275 (+)
RNA-Seq Expression	Bhi05G001314
Synteny	Bhi05G001314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGTCGGGAATGAGTAGAAAGGTGAGAGGTGCAAAGAGGAGGAAAAAGATGGGTTTTAGAACAATAAAAGACGAGGAATGATGGGTGGAAGGTGGAAACAAAGTTAAGGTTGATAGGAAGGATGAAAGAAACTCCTTCCAAAAACGGGCGCGGTGAAGTATAATTCAGAGGAGGTGAGAAAGACGATGCAGAAGCTACGATGGTTGAAAATTTAAGAAAAGTTTTGGTGTGGCAGTCATGCGGAGGAGGTTGGGGATAAAGAGTTTTTTGAGGGTGAAGATAAGGGAAAGGATGTGAATGCAGATGTCGAGCTGTCCGAAGATGATGAAAATGGTGAATTCAACCAGTATAACGAAAGTTTGCAGAAGGGTTGTAGGCCTTTCGAGCGGCATTCAAGGAAGTATTATCAAGAGAGCATATCTGATAAACTTCTGGTAGTTATTAATTTAAATGTGTCCTGGAATTATTTTTTGCTAGTTGAAGTAGTGAAGAAAATGATTGTATATTTTTGTGTTGCAGGGTCCTATATTATCACGCAAACAAGAAGCTTATTGGTTGAAGAAGCTTGCAGAAGGGAAGCTGAGCGGAAGTTAA

mRNA sequence

ATGGCTGATGTCGGGAATGATCATGCGGAGGAGGTTGGGGATAAAGAGTTTTTTGAGGGTGAAGATAAGGGAAAGGATGTGAATGCAGATGTCGAGCTGTCCGAAGATGATGAAAATGGTGAATTCAACCAGTATAACGAAAGTTTGCAGAAGGGTTGTAGGCCTTTCGAGCGGCATTCAAGGAAGTATTATCAAGAGAGCATATCTGATAAACTTCTGGGTCCTATATTATCACGCAAACAAGAAGCTTATTGGTTGAAGAAGCTTGCAGAAGGGAAGCTGAGCGGAAGTTAA

Coding sequence (CDS)

ATGGCTGATGTCGGGAATGATCATGCGGAGGAGGTTGGGGATAAAGAGTTTTTTGAGGGTGAAGATAAGGGAAAGGATGTGAATGCAGATGTCGAGCTGTCCGAAGATGATGAAAATGGTGAATTCAACCAGTATAACGAAAGTTTGCAGAAGGGTTGTAGGCCTTTCGAGCGGCATTCAAGGAAGTATTATCAAGAGAGCATATCTGATAAACTTCTGGGTCCTATATTATCACGCAAACAAGAAGCTTATTGGTTGAAGAAGCTTGCAGAAGGGAAGCTGAGCGGAAGTTAA

Protein sequence

MADVGNDHAEEVGDKEFFEGEDKGKDVNADVELSEDDENGEFNQYNESLQKGCRPFERHSRKYYQESISDKLLGPILSRKQEAYWLKKLAEGKLSGS

Homology

[Close]

BLAST of Bhi05G001314 vs. ExPASy TrEMBL
Match: A0A0A0K320 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.2e-11
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 8   HAEEVGDKEFFEGEDKGKDVNADVELSEDDENGEFNQYNESLQKGCRPFERHSRKYYQES 67
           H EEVGD+EF EGE++ KDVNADVELSEDDENGE         +GCR F        +++
Sbjct: 81  HEEEVGDEEFSEGEEERKDVNADVELSEDDENGEIQPGITKFTEGCRAFRAAFMSILKKN 140

Query: 68  ISDKLLGPILSRKQEAYWLKKLAE 92
           ISD+ LGPILS  ++    +KLAE
Sbjct: 141 ISDETLGPILSANKKLV-AEKLAE 163

[Close]

BLAST of Bhi05G001314 vs. ExPASy TrEMBL
Match: A0A6J1GMJ1 (LOW QUALITY PROTEIN: RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111455323 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 10  EEVGDKEFFEGEDKGKDVNADVELSEDDENGEFNQYNESLQKGCRPFERHSRKYYQESIS 69
           EEVGD+EF EGE++GKD+NAD+E SEDDENG+         +GCR F    R   ++SIS
Sbjct: 81  EEVGDEEFSEGEEEGKDINADLEPSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSIS 140

Query: 70  DKLLGPILSRKQEAYWLKKLAE 92
           D+ LGPILS  ++    +KLAE
Sbjct: 141 DETLGPILSANKKLV-AEKLAE 161

[Close]

BLAST of Bhi05G001314 vs. ExPASy TrEMBL
Match: A0A5D3BX18 (RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663G00070 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-10
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 6   NDHAEEVGDKEFFEGEDKGKDVNADVELSEDDENGEFNQYNESLQKGCRPFERHSRKYYQ 65
           + H EEVGD+E  EGE++ KDVNADVELSEDDENGE         +GCR F        +
Sbjct: 79  HSHEEEVGDEELSEGEEERKDVNADVELSEDDENGEIQPGITKFTEGCRAFRAAFISILK 138

Query: 66  ESISDKLLGPILSRKQEAYWLKKLAE 92
           ++ISD+ LGPILS  ++    +KLAE
Sbjct: 139 KNISDETLGPILSANKKLV-AEKLAE 163

[Close]

BLAST of Bhi05G001314 vs. ExPASy TrEMBL
Match: A0A5A7UXA3 (RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001920 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-10
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 6   NDHAEEVGDKEFFEGEDKGKDVNADVELSEDDENGEFNQYNESLQKGCRPFERHSRKYYQ 65
           + H EEVGD+E  EGE++ KDVNADVELSEDDENGE         +GCR F        +
Sbjct: 79  HSHEEEVGDEELSEGEEERKDVNADVELSEDDENGEIQPGITKFTEGCRAFRAAFISILK 138

Query: 66  ESISDKLLGPILSRKQEAYWLKKLAE 92
           ++ISD+ LGPILS  ++    +KLAE
Sbjct: 139 KNISDETLGPILSANKKLV-AEKLAE 163

[Close]

BLAST of Bhi05G001314 vs. ExPASy TrEMBL
Match: A0A1S3CFX9 (RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-10
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 6   NDHAEEVGDKEFFEGEDKGKDVNADVELSEDDENGEFNQYNESLQKGCRPFERHSRKYYQ 65
           + H EEVGD+E  EGE++ KDVNADVELSEDDENGE         +GCR F        +
Sbjct: 79  HSHEEEVGDEELSEGEEERKDVNADVELSEDDENGEIQPGITKFTEGCRAFRAAFISILK 138

Query: 66  ESISDKLLGPILSRKQEAYWLKKLAE 92
           ++ISD+ LGPILS  ++    +KLAE
Sbjct: 139 KNISDETLGPILSANKKLV-AEKLAE 163

The following BLAST results are available for this feature:

BLAST of Bhi05G001314 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001314 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K320	6.2e-11	53.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1	[more]
A0A6J1GMJ1	2.4e-10	52.44	LOW QUALITY PROTEIN: RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5D3BX18	6.9e-10	51.16	RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663...	[more]
A0A5A7UXA3	6.9e-10	51.16	RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0...	[more]
A0A1S3CFX9	6.9e-10	51.16	RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001314	Bhi05M001314	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing