Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTGGTTTTTCGTTCTTCTCTTCTTAGTCGCAAAAGCTCAGGCTACAACGATCAACCAAACCGACCTGCAGGTAGCCATGGACGAGATGAGATTGAAATCTTACCATGGCTTTGTCATACTACTCAATATCTTAAACAGCTCCCATAAAACCTTGCAAAACTCAGATATAACCTTCTTCATGCCCAACGATCAGGAACTTTCTCTAGCTGCAATCTCACCAGACGGACTAGAAGATTTTGTTCTAAGCCATTCTGTTCCCACAGCATTACTGCTCAACAATCTTTTACACTTCCCAAATGGCAGCTTGGTTCCATCAAGCATCCCAAACAGAATGATCAGCATAACCAACTGCAGAAAGATGGGCGTGTGTGTGAACAATGCACGAATTGTTACCCCAAACGTGTGCTTAACCTCATCCATAAGATGTCATGGCATAAGCTCAACTATCACATATGATAAAACTTCCATTTCAGATACTTTACCAGCCAAGCAGAGTTCAGCTGAAACTATAGTTCAGCGGAACGAAAAGAAAGCAGCAAAATCTTTACAGTCAGCAGCAATGAAGAAGAACCGTCCATTGCACTGA
mRNA sequence
ATGGCTCCCTGGTTTTTCGTTCTTCTCTTCTTAGTCGCAAAAGCTCAGGCTACAACGATCAACCAAACCGACCTGCAGGTAGCCATGGACGAGATGAGATTGAAATCTTACCATGGCTTTGTCATACTACTCAATATCTTAAACAGCTCCCATAAAACCTTGCAAAACTCAGATATAACCTTCTTCATGCCCAACGATCAGGAACTTTCTCTAGCTGCAATCTCACCAGACGGACTAGAAGATTTTGTTCTAAGCCATTCTGTTCCCACAGCATTACTGCTCAACAATCTTTTACACTTCCCAAATGGCAGCTTGGTTCCATCAAGCATCCCAAACAGAATGATCAGCATAACCAACTGCAGAAAGATGGGCGTGTGTGTGAACAATGCACGAATTGTTACCCCAAACGTGTGCTTAACCTCATCCATAAGATGTCATGGCATAAGCTCAACTATCACATATGATAAAACTTCCATTTCAGATACTTTACCAGCCAAGCAGAGTTCAGCTGAAACTATAGTTCAGCGGAACGAAAAGAAAGCAGCAAAATCTTTACAGTCAGCAGCAATGAAGAAGAACCGTCCATTGCACTGA
Coding sequence (CDS)
ATGGCTCCCTGGTTTTTCGTTCTTCTCTTCTTAGTCGCAAAAGCTCAGGCTACAACGATCAACCAAACCGACCTGCAGGTAGCCATGGACGAGATGAGATTGAAATCTTACCATGGCTTTGTCATACTACTCAATATCTTAAACAGCTCCCATAAAACCTTGCAAAACTCAGATATAACCTTCTTCATGCCCAACGATCAGGAACTTTCTCTAGCTGCAATCTCACCAGACGGACTAGAAGATTTTGTTCTAAGCCATTCTGTTCCCACAGCATTACTGCTCAACAATCTTTTACACTTCCCAAATGGCAGCTTGGTTCCATCAAGCATCCCAAACAGAATGATCAGCATAACCAACTGCAGAAAGATGGGCGTGTGTGTGAACAATGCACGAATTGTTACCCCAAACGTGTGCTTAACCTCATCCATAAGATGTCATGGCATAAGCTCAACTATCACATATGATAAAACTTCCATTTCAGATACTTTACCAGCCAAGCAGAGTTCAGCTGAAACTATAGTTCAGCGGAACGAAAAGAAAGCAGCAAAATCTTTACAGTCAGCAGCAATGAAGAAGAACCGTCCATTGCACTGA
Protein sequence
MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDITFFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNCRKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTSISDTLPAKQSSAETIVQRNEKKAAKSLQSAAMKKNRPLH
Homology
BLAST of Bhi05G001278 vs. TAIR 10
Match:
AT5G26730.1 (Fasciclin-like arabinogalactan family protein )
HSP 1 Score: 148.3 bits (373), Expect = 6.6e-36
Identity = 74/140 (52.86%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 21 NQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDITFFMPNDQELSLAAISPDGLE 80
NQTDL AM +MR +SY+GFVILL LN ++ +N+DITF MP+D ++S A I+P+ LE
Sbjct: 114 NQTDLISAMTDMRRQSYNGFVILLRFLNDTN-YFRNTDITFLMPSDNDISHADITPESLE 173
Query: 81 DFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNCRKMGVCVNNARIVTPNVCLT 140
F+L H++P L++N++LHFPN +LVP S +RM +IT G+ VNNARIVTPNVC
Sbjct: 174 TFILKHTIPAWLMINHMLHFPNRTLVPCSFSDRMFTITKSGGSGIYVNNARIVTPNVCQN 233
Query: 141 SSIRCHGISSTITYDKTSIS 161
S I CHGIS I++++ +S
Sbjct: 234 SRISCHGISDVISFNQNYVS 252
BLAST of Bhi05G001278 vs. TAIR 10
Match:
AT5G16920.1 (Fasciclin-like arabinogalactan family protein )
HSP 1 Score: 102.1 bits (253), Expect = 5.4e-22
Identity = 57/152 (37.50%), Postives = 92/152 (60.53%), Query Frame = 0
Query: 21 NQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDITFFMPNDQELSLAAI--SPDG 80
N +L +A++EM +Y FV+L+N+L S + +++TF MP D+ LS + I D
Sbjct: 32 NNHELSIAIEEMEKANYFSFVMLINMLPSVNPRFL-ANVTFLMPKDKTLSTSNIINQQDS 91
Query: 81 LEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNCRKMGVCVNNARIVTPNVC 140
+ +F+L HS+P++LL +L PNGS+VPSS+P+ + I+N + +NN +I++ N+C
Sbjct: 92 VTEFLLRHSIPSSLLFEHLNLIPNGSIVPSSLPHYTLEISNGGRSNYFLNNVKIISRNIC 151
Query: 141 LTSSIRCHGIS------STITYDKTSISDTLP 165
SI+CHGI ST+ D + TLP
Sbjct: 152 SLGSIKCHGIDGILQSPSTVDDDSPRNNHTLP 182
BLAST of Bhi05G001278 vs. ExPASy TrEMBL
Match:
A0A0A0K7Q8 (FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=3 SV=1)
HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 168/197 (85.28%), Postives = 177/197 (89.85%), Query Frame = 0
Query: 1 MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60
MAPWFFVLLFLVAKA AT NQ DLQ AMDEMRLKSYHGF ILL ILNS+ KTLQNS+IT
Sbjct: 1 MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120
FFMP DQELS A ISPD LE+FVLSHS+PTALLLNNLLHFPNG+LVPSSIPNRMI ITNC
Sbjct: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
Query: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTSISDTLPAKQSSAETIVQRNEKK 180
RKMGVC+NNARI+TPNVCLTSSIRCHGIS+ I+YDKTS SDTLPAKQSSAE IVQRNE K
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180
Query: 181 AAKSLQSAAMKKNRPLH 198
AKSLQS AMKKNR LH
Sbjct: 181 GAKSLQSGAMKKNRSLH 197
BLAST of Bhi05G001278 vs. ExPASy TrEMBL
Match:
A0A5D3E7C1 (Fasciclin-like arabinogalactan protein 19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00700 PE=3 SV=1)
HSP 1 Score: 310.1 bits (793), Expect = 6.8e-81
Identity = 163/198 (82.32%), Postives = 174/198 (87.88%), Query Frame = 0
Query: 1 MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60
MAPWFFVLLFL+ KA AT NQ DLQ AMD+MRLKSYHGF ILL ILNS+ KTLQNS+IT
Sbjct: 1 MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120
FFMP DQELS A ISP+ L+DFVLSHS+PTALLLNNLLHFPNGSLVPSSIPNRMI ITNC
Sbjct: 61 FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120
Query: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTS-ISDTLPAKQSSAETIVQRNEK 180
RKMGVCVNNARI+TPNVCLTSSIRCHGISS I+YDKTS SDTLPAKQSSA+ IVQRNE
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180
Query: 181 KAAKSLQSAAMKKNRPLH 198
AKS +S AMKKNR LH
Sbjct: 181 NGAKSSESGAMKKNRSLH 198
BLAST of Bhi05G001278 vs. ExPASy TrEMBL
Match:
A0A1S3CGC4 (uncharacterized protein LOC107990279 OS=Cucumis melo OX=3656 GN=LOC107990279 PE=3 SV=1)
HSP 1 Score: 310.1 bits (793), Expect = 6.8e-81
Identity = 163/198 (82.32%), Postives = 174/198 (87.88%), Query Frame = 0
Query: 1 MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60
MAPWFFVLLFL+ KA AT NQ DLQ AMD+MRLKSYHGF ILL ILNS+ KTLQNS+IT
Sbjct: 1 MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120
FFMP DQELS A ISP+ L+DFVLSHS+PTALLLNNLLHFPNGSLVPSSIPNRMI ITNC
Sbjct: 61 FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120
Query: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTS-ISDTLPAKQSSAETIVQRNEK 180
RKMGVCVNNARI+TPNVCLTSSIRCHGISS I+YDKTS SDTLPAKQSSA+ IVQRNE
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180
Query: 181 KAAKSLQSAAMKKNRPLH 198
AKS +S AMKKNR LH
Sbjct: 181 NGAKSSESGAMKKNRSLH 198
BLAST of Bhi05G001278 vs. ExPASy TrEMBL
Match:
A0A6J1JQD1 (uncharacterized protein LOC111486521 OS=Cucurbita maxima OX=3661 GN=LOC111486521 PE=4 SV=1)
HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 162/197 (82.23%), Postives = 174/197 (88.32%), Query Frame = 0
Query: 1 MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60
MA WFFVLLFLV A+ATT NQTDL+ AMD+MR+KSYHGFVILL ILNSSHK L NSDIT
Sbjct: 1 MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60
Query: 61 FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120
FFMP DQELS AAISPD +E+FVLSHS+PT L+LNNLLHFPNGSLVPSSIPNRMISITNC
Sbjct: 61 FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLNNLLHFPNGSLVPSSIPNRMISITNC 120
Query: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTSISDTLPAKQSSAETIVQRNEKK 180
RKMGVC+NNA+IVTPNVCL S+IRCHGIS+TI YD TS SD KQSSAETIVQRNEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---IKQSSAETIVQRNEKK 180
Query: 181 AAKSLQSAAMKKNRPLH 198
AKSLQ AAMKKNR LH
Sbjct: 181 GAKSLQYAAMKKNRLLH 194
BLAST of Bhi05G001278 vs. ExPASy TrEMBL
Match:
A0A6J1ERK4 (uncharacterized protein LOC111435225 OS=Cucurbita moschata OX=3662 GN=LOC111435225 PE=4 SV=1)
HSP 1 Score: 308.5 bits (789), Expect = 2.0e-80
Identity = 160/197 (81.22%), Postives = 174/197 (88.32%), Query Frame = 0
Query: 1 MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60
MA WFFVLLFLV A+ATT NQTDL+ AMD+MR+KSYHGFVILL ILNSSHK L NSDIT
Sbjct: 1 MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60
Query: 61 FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120
FFMP DQELS AAISPD +E+FVLSHS+PT L+L+NLLHFPNGSLVPSSIPNRMIS+TNC
Sbjct: 61 FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLSNLLHFPNGSLVPSSIPNRMISVTNC 120
Query: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTSISDTLPAKQSSAETIVQRNEKK 180
RKMGVC+NNA+IVTPNVCL S+IRCHGIS+TI YD TS SD K SSAETIVQRNEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---IKHSSAETIVQRNEKK 180
Query: 181 AAKSLQSAAMKKNRPLH 198
AKSLQ AAMKKNRPLH
Sbjct: 181 GAKSLQYAAMKKNRPLH 194
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT5G26730.1 | 6.6e-36 | 52.86 | Fasciclin-like arabinogalactan family protein | [more] |
AT5G16920.1 | 5.4e-22 | 37.50 | Fasciclin-like arabinogalactan family protein | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K7Q8 | 1.0e-84 | 85.28 | FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=3 S... | [more] |
A0A5D3E7C1 | 6.8e-81 | 82.32 | Fasciclin-like arabinogalactan protein 19 OS=Cucumis melo var. makuwa OX=1194695... | [more] |
A0A1S3CGC4 | 6.8e-81 | 82.32 | uncharacterized protein LOC107990279 OS=Cucumis melo OX=3656 GN=LOC107990279 PE=... | [more] |
A0A6J1JQD1 | 1.5e-80 | 82.23 | uncharacterized protein LOC111486521 OS=Cucurbita maxima OX=3661 GN=LOC111486521... | [more] |
A0A6J1ERK4 | 2.0e-80 | 81.22 | uncharacterized protein LOC111435225 OS=Cucurbita moschata OX=3662 GN=LOC1114352... | [more] |