Bhi05G001162 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001162
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ubiquitin-like domain-containing protein
Location	chr5: 46156922 .. 46157233 (-)
RNA-Seq Expression	Bhi05G001162
Synteny	Bhi05G001162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTGTGATCTTAGAACTCAGATCACTGCCCATCACAACCTCCCTTCTCACCGTCTGATCTTCATTCCTGACCACAATCGTGACCGTCTGATCTGCCAGGACGACGATGGAATCTCGCTCGTTGATTTCGGAGTACGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGACGATGATGGTGATGATGTTGAAGATCGCCGATTCTTCTTTACTTGTCCCGATATTCTTCTTTTCTAG

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTGTGATCTTAGAACTCAGATCACTGCCCATCACAACCTCCCTTCTCACCGTCTGATCTTCATTCCTGACCACAATCGTGACCGTCTGATCTGCCAGGACGACGATGGAATCTCGCTCGTTGATTTCGGAGTACGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGACGATGATGGTGATGATGTTGAAGATCGCCGATTCTTCTTTACTTGTCCCGATATTCTTCTTTTCTAG

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTGTGATCTTAGAACTCAGATCACTGCCCATCACAACCTCCCTTCTCACCGTCTGATCTTCATTCCTGACCACAATCGTGACCGTCTGATCTGCCAGGACGACGATGGAATCTCGCTCGTTGATTTCGGAGTACGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGACGATGATGGTGATGATGTTGAAGATCGCCGATTCTTCTTTACTTGTCCCGATATTCTTCTTTTCTAG

Protein sequence

MKLVVQNLTGSLFYVEVEDDATVCDLRTQITAHHNLPSHRLIFIPDHNRDRLICQDDDGISLVDFGVRDGSHIYIFFCPLDDDDGDDVEDRRFFFTCPDILLF

Homology

[Close]

BLAST of Bhi05G001162 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-10
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVCDLRTQITAHHNLPSHRLIF-IPDHNRDRLICQDDDG 60
           MK+ V+ +TG+    +V +DATV  ++ +I     LP  RLI  I D    RL+ +D+D 
Sbjct: 1   MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61  ISLVDFGVRDGSHIYIFFCPLD----------DDDGDDVED 91
           + L D GV + SHIY+FF   D          +DD D +E+
Sbjct: 61  MMLRDLGVGEDSHIYLFFKHPDLVSKEERSKGEDDDDPMEE 101

[Close]

BLAST of Bhi05G001162 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.7e-40
Identity = 88/107 (82.24%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVCDLRTQITAH---HNLPSHRLIFIPDHNRDRLICQDD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPSHRLIFIPDHN +RLI Q D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDDDGDDVEDRRFFFT-CPDILLF 104
           DGISLVDFG+RDGSHIYIFF PL DDDGDD+E RRFFFT   D+LLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Bhi05G001162 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVCDLRTQITAHHNLPSHRLIFIPDHNRDRLICQDDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPS RL+F+PDH+R RLI   DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDVEDRRFFFTCPDILLF 104
           SLVDFG+RDGS IYIFFCPLDDD GDDV+ R+ FF CPD+LLF
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103

[Close]

BLAST of Bhi05G001162 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.7e-33
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVCDLRTQITAHHNLPSHRLIFIPDHNRDRLICQDDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPS RL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDVEDRRFFFTCPDILLF 104
           SLVDFG+RDGS IY+FFCPLD++  DD++ R+ FF CPD+LLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of Bhi05G001162 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVCDLRTQITAHHN--LPSHRLIFIPDHNRDRLICQDDD 60
           MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN  LPS RLIFI D N  R I +DDD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGVRDGSHIYIFFCPLDDDD-----GDDVE----DRRFFFTCPDILLF 104
           G SLVD GV+DGSHIYIFF PLD +D     GDD +     R FFFTC +ILLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of Bhi05G001162 vs. ExPASy TrEMBL
Match: A0A5D3BP45 (Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00410 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 27  RTQITAH-HNLPSHRLIFIPDHNRDRLICQDDDGISLVDFGVRDGSHIYIFFCPLDDDDG 86
           RTQI AH  NLPSH LIFI DH+ +RLI + DD ISLVDFG+ DGS+IYIFFCPLD+D G
Sbjct: 575 RTQIIAHQRNLPSHCLIFILDHDPERLISEVDDKISLVDFGLHDGSNIYIFFCPLDNDGG 634

Query: 87  DDVEDRRFFFT 97
           DD+E RRFFFT
Sbjct: 635 DDIEARRFFFT 645

The following BLAST results are available for this feature:

BLAST of Bhi05G001162 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	4.2e-10	36.63	Ubiquitin-like superfamily protein	[more]

BLAST of Bhi05G001162 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi05G001162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6	6.7e-40	82.24	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1JPI4	3.5e-36	72.82	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A6J1ERN4	2.7e-33	66.99	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1C3E5	2.7e-28	63.16	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3BP45	7.8e-20	73.24	Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..77 e-value: 1.8E-8 score: 36.0
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..76 e-value: 1.22396E-7 score: 42.9686
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 9.308193
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001162	Bhi05M001162	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0005983	starch catabolic process
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity