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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAACGGCAGAAGCACTGATTGACGTTGTGAGCATCTCGGGTGTGAAAGAACGGCCATCGGCAACGGTAGTAGGATTCTATCCGTTCGAGTCTAGGTCTACCGGTGGGTCGTCCTCTGAGTCATTCTCGCAAACAAAGAAAAAAAGAGATGGAATTAATTCAAGCCAGCAAAGGACTAAGGTAGGGGACAAGAAAGGTAAAGAGAAGGGGCCGTCGTTGGTGCGTAACAGAGCTTTCCTATCGACGATCTTTCTCGATGCATAA mRNA sequence ATGGCAACGGCAGAAGCACTGATTGACGTTGTGAGCATCTCGGGTGTGAAAGAACGGCCATCGGCAACGGTAGTAGGATTCTATCCGTTCGAGTCTAGGTCTACCGGTGGGTCGTCCTCTGAGTCATTCTCGCAAACAAAGAAAAAAAGAGATGGAATTAATTCAAGCCAGCAAAGGACTAAGGTAGGGGACAAGAAAGGTAAAGAGAAGGGGCCGTCGTTGGTGCGTAACAGAGCTTTCCTATCGACGATCTTTCTCGATGCATAA Coding sequence (CDS) ATGGCAACGGCAGAAGCACTGATTGACGTTGTGAGCATCTCGGGTGTGAAAGAACGGCCATCGGCAACGGTAGTAGGATTCTATCCGTTCGAGTCTAGGTCTACCGGTGGGTCGTCCTCTGAGTCATTCTCGCAAACAAAGAAAAAAAGAGATGGAATTAATTCAAGCCAGCAAAGGACTAAGGTAGGGGACAAGAAAGGTAAAGAGAAGGGGCCGTCGTTGGTGCGTAACAGAGCTTTCCTATCGACGATCTTTCTCGATGCATAA Protein sequence MATAEALIDVVSISGVKERPSATVVGFYPFESRSTGGSSSESFSQTKKKRDGINSSQQRTKVGDKKGKEKGPSLVRNRAFLSTIFLDA
Homology
BLAST of Bhi05G000710 vs. ExPASy TrEMBL
Match: A0A1R3KVR7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_03949 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0 Query: 13 ISGVKERPSATVVGFYPFESRSTGGSSSESFSQTKKKRDGINSSQQRTKVGDKKGKEKGP 72 ++G + A VV FYPFESRSTGGSSSES S+ +++ NSSQQ T+VG++KGKEK P Sbjct: 30 LTGGRSEVEAAVVRFYPFESRSTGGSSSESLSRAERR----NSSQQMTEVGNEKGKEKRP 85
BLAST of Bhi05G000710 vs. ExPASy TrEMBL
Match: A0A1R3KVV7 (RNase H domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_03980 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0 Query: 24 VVGFYPFESRSTGGSSSESFSQTKKKRDGINSSQQRTKVGDKKGKEKGP 73 VV FYPFESRSTGGSSSES S+ +++ NSSQQ T+VG++KGKEK P Sbjct: 187 VVRFYPFESRSTGGSSSESLSRAERR----NSSQQMTEVGNEKGKEKRP 231
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1R3KVR7 | 2.4e-06 | 58.33 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_03949 PE=4 SV=1 | [more] |
A0A1R3KVV7 | 2.7e-05 | 67.35 | RNase H domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_03980... | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 32..74 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 44..73 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
molecular_function |
GO:0003676 |
nucleic acid binding |
molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
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