Bhi05G000381 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000381
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr5: 13521282 .. 13522163 (-)
RNA-Seq Expression	Bhi05G000381
Synteny	Bhi05G000381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCAGAGCCCACGTCTTAGAACCTTGGTGAATACCCATGCAACCCATTCACCTAGTAACTTGATGGCATCTGAGGAAGGATATAGCTCGTCGGTTGAATAGGTTGCCGAAGATCCAACAACTCATTCACGTAAAGCACAACTATCTTCATCCAAGCACGAGAAATCCAAGGCCCATGATGTGAGACAACCTGTGGACACTTGCCTGGCCAACCTGGAGCAAAGCTTGGAGGAGATACATGCGTTGGTTGGTAGGTTGAGTGACGACTATGAGGGCTTAGTCCAAAAGAATGTCGAGATCACTGTTGCTGCAAAAGAGATGATCATGGAGCTTGGACGATCATTCAGTAGGGAGGTAAGTTCTCTAACTAATGATGTTGAAACCTACGTAAGTTTGTGGAGGGTGTGCTCTATGAGCTTCGTAAATAACTCGACGACATACGTACTGAATGTCGTAACAATTGTAGAGCTAGTAATCAATATGCATCTACTAGGTCACCATCTGCTGCGACCGTGCATGGCATCCATGGATTGAAGGTGCCAAAACCCGACACATATGATGGCACATGTAGTTCCACAGTGGTGAAAAACTTCATCTTCGGCCTAGAACAATATTTCGAAGCCCTTGGTGTCATCGAGGATGGTGCTAAGATTGCGAATGCACCAAACTTCCTACTTGCAATAGCCCAATTGTGGTGGCATAGGAAACATGTCGAAAGGGAACGTGGCCTATGCACTTTACAACATGGGAGCAATTCAAAGCAGAGCTCCAAAAGCATTTTGTTCCCCACAATGCTAATATGGAGGCACGAGGAAAGCTTTGAAGGCTTAGATAGAATGCAAGTATCTCAGAGTATATCAAGGCATTCACGACCCTAA

mRNA sequence

ATGGTTGCCGAAGATCCAACAACTCATTCACGTAAAGCACAACTATCTTCATCCAAGCACGAGAAATCCAAGGCCCATGATGTGAGACAACCTGTGGACACTTGCCTGGCCAACCTGGAGCAAAGCTTGGAGGAGATACATGCGTTGGTTGGTAGGTTGAGTGACGACTATGAGGGCTTAGTCCAAAAGAATGTCGAGATCACTGTTGCTGCAAAAGAGATGATCATGGAGCTTGGACGATCATTCAGTAGGGAGGTGCCAAAACCCGACACATATGATGGCACATGTAGTTCCACAGTGGTGAAAAACTTCATCTTCGGCCTAGAACAATATTTCGAAGCCCTTGGTGTCATCGAGGATGGTGCTAAGATTGCGAATGCACCAAACTTCCTACTTGCAATAGCCCAATTGTGGTGGCATAGGAAACATGTCGAAAGGGAACGTGGCCTATGCACTTTACAACATGGGAGCAATTCAAAGCAGAGCTCCAAAAGCATTTTGTTCCCCACAATGCTAATATGGAGGCACGAGGAAAGCTTTGAAGGCTTAGATAGAATGCAAGTATCTCAGAGTATATCAAGGCATTCACGACCCTAA

Coding sequence (CDS)

ATGGTTGCCGAAGATCCAACAACTCATTCACGTAAAGCACAACTATCTTCATCCAAGCACGAGAAATCCAAGGCCCATGATGTGAGACAACCTGTGGACACTTGCCTGGCCAACCTGGAGCAAAGCTTGGAGGAGATACATGCGTTGGTTGGTAGGTTGAGTGACGACTATGAGGGCTTAGTCCAAAAGAATGTCGAGATCACTGTTGCTGCAAAAGAGATGATCATGGAGCTTGGACGATCATTCAGTAGGGAGGTGCCAAAACCCGACACATATGATGGCACATGTAGTTCCACAGTGGTGAAAAACTTCATCTTCGGCCTAGAACAATATTTCGAAGCCCTTGGTGTCATCGAGGATGGTGCTAAGATTGCGAATGCACCAAACTTCCTACTTGCAATAGCCCAATTGTGGTGGCATAGGAAACATGTCGAAAGGGAACGTGGCCTATGCACTTTACAACATGGGAGCAATTCAAAGCAGAGCTCCAAAAGCATTTTGTTCCCCACAATGCTAATATGGAGGCACGAGGAAAGCTTTGAAGGCTTAGATAGAATGCAAGTATCTCAGAGTATATCAAGGCATTCACGACCCTAA

Protein sequence

MVAEDPTTHSRKAQLSSSKHEKSKAHDVRQPVDTCLANLEQSLEEIHALVGRLSDDYEGLVQKNVEITVAAKEMIMELGRSFSREVPKPDTYDGTCSSTVVKNFIFGLEQYFEALGVIEDGAKIANAPNFLLAIAQLWWHRKHVERERGLCTLQHGSNSKQSSKSILFPTMLIWRHEESFEGLDRMQVSQSISRHSRP

Homology

[Close]

BLAST of Bhi05G000381 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 80/210 (38.10%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 2   VAEDPTTHSRKAQLSSSKHEKSKAHDVRQPVDTCLANLEQSLEEIHALVGRLSDDYEGLV 61
           V E P T  RK Q S ++  KSK   VR+ VDT L NLEQ +E++   VGRLS+++E LV
Sbjct: 14  VIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSENFEELV 73

Query: 62  QKNVEITVAAKEMIMELGRSFSRE------------------------------------ 121
           Q+N EIT  AKEMI ++GR+F  E                                    
Sbjct: 74  QENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNLHTKSISFETRLDAL 133

Query: 122 -----------------------------VPKPDTYDGTCSSTVVKNFIFGLEQYFEALG 147
                                        VPKPD Y+G  ++TVV NF+FGLE+YF ALG
Sbjct: 134 CVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALG 193

[Close]

BLAST of Bhi05G000381 vs. ExPASy TrEMBL
Match: A0A5A7TAA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00340 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 80/210 (38.10%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 2   VAEDPTTHSRKAQLSSSKHEKSKAHDVRQPVDTCLANLEQSLEEIHALVGRLSDDYEGLV 61
           V E P T  RK Q S ++  KSK   VR+ VDT L NLEQ +E++   VGRLS+++E LV
Sbjct: 14  VIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSENFEELV 73

Query: 62  QKNVEITVAAKEMIMELGRSFSRE------------------------------------ 121
           Q+N EIT  AKEMI ++GR+F  E                                    
Sbjct: 74  QENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDAL 133

Query: 122 -----------------------------VPKPDTYDGTCSSTVVKNFIFGLEQYFEALG 147
                                        VPKPD Y+G  ++TVV NF+FGLE+YF ALG
Sbjct: 134 CVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALG 193

[Close]

BLAST of Bhi05G000381 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 80/210 (38.10%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 2   VAEDPTTHSRKAQLSSSKHEKSKAHDVRQPVDTCLANLEQSLEEIHALVGRLSDDYEGLV 61
           V E P T  RK Q S ++  KSK   VR+ VDT L NLEQ +E++   VGRLS+ +E LV
Sbjct: 14  VIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQLAVGRLSEIFEELV 73

Query: 62  QKNVEITVAAKEMIMELGRSFSRE------------------------------------ 121
           Q+N EIT  AKEMI ++GR+F +E                                    
Sbjct: 74  QENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDLHTKSISFETRLDAL 133

Query: 122 -----------------------------VPKPDTYDGTCSSTVVKNFIFGLEQYFEALG 147
                                        VPKPD Y+G  ++TVV NF+FGLE+YF ALG
Sbjct: 134 CVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALG 193

[Close]

BLAST of Bhi05G000381 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 78/210 (37.14%), Postives = 105/210 (50.00%), Query Frame = 0


Query: 2   VAEDPTTHSRKAQLSSSKHEKSKAHDVRQPVDTCLANLEQSLEEIHALVGRLSDDYEGLV 61
           V E P T  RK Q S ++  KSK   VR+ VDT L NLE+ +E++   VGRLS+++E LV
Sbjct: 104 VIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELV 163

Query: 62  QKNVEITVAAKEMIMELGRSFSRE------------------------------------ 121
           Q+N EIT  AKEMI ++GR+F +E                                    
Sbjct: 164 QENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDAL 223

Query: 122 -----------------------------VPKPDTYDGTCSSTVVKNFIFGLEQYFEALG 147
                                        VPKPD Y+G  ++TVV NF+FGLE+YF ALG
Sbjct: 224 CVECHSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALG 283

[Close]

BLAST of Bhi05G000381 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 78/210 (37.14%), Postives = 105/210 (50.00%), Query Frame = 0


Query: 2   VAEDPTTHSRKAQLSSSKHEKSKAHDVRQPVDTCLANLEQSLEEIHALVGRLSDDYEGLV 61
           V E P T  RK Q S ++  KSK   VR+ VDT L NLE+ +E++   VGRLS+++E LV
Sbjct: 167 VIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELV 226

Query: 62  QKNVEITVAAKEMIMELGRSFSRE------------------------------------ 121
           Q+N EIT  AKEMI ++GR+F +E                                    
Sbjct: 227 QENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDAL 286

Query: 122 -----------------------------VPKPDTYDGTCSSTVVKNFIFGLEQYFEALG 147
                                        VPKPD Y+G  ++TVV NF+FGLE+YF ALG
Sbjct: 287 CVECHSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALG 346

The following BLAST results are available for this feature:

BLAST of Bhi05G000381 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G000381 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G000381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEX8	1.1e-27	38.10	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]
A0A5A7TAA5	1.1e-27	38.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7THC0	1.9e-27	38.10	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3D3V4	1.9e-27	37.14	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TFP3	1.9e-27	37.14	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000381	Bhi05M000381	mRNA