Bhi05G000371 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000371
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	60S ribosomal protein L18
Location	chr5: 13106510 .. 13109025 (+)
RNA-Seq Expression	Bhi05G000371
Synteny	Bhi05G000371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGATCCAGCCCACAGAGAATGGCAAGGCCGATCCACCACTATAAAATAGGTTTAAAAACCCTTATTTTCACCTTCGCCGTCCTTCCACCCCAGCACCAGAACGCCGCTCCTAAACTCGGAGAGCTCCAATGGTACCCCCTAATTCTCTCTCTATCTACTCATTCACTGCATTCTCTCTCTAACTTATGCCTTTTATACCTGATTTGTTGATTTTACTTCTTCCGGTGATTAGGGGATCGATCTTGTAGCAGGAGGTAAGAGTAAGAAGACCAAGAGGACTGCACCCAAATCTGATGATATCTACCTTAAGTTACTCGTCAAGGTACTTGTTATTCCAGATTTCTCCTTCATATTCAGTTTTTGTTTCATCTATTTGTGTTTAAGTTTGCTTGATTGTTCAAGGGTTTCGTTTAAAATAGTGTTTTGTTGCAATGTCTTTGAGATGGTCTGTGCCTCTCCCTTTGAGAACCAATTTTGAATTGTCAATGGATTGGTTTCTTGGATTTCGGAAAACCGAGTTCACCCTCGTTCCCCCATTGAAATTGCTAGCAGTTTATGAATGCTTAATTTTTGTTTTGTTTTTCTCCAGTGAATTGTTTTTTTATGGCTGATATTTCTGCTTTGATGATATTTGTGAATCCCAGCTCATGATGAGACCTTTTGTAGGTCATGGAATAGTCTTTACCCACAAAATATCTGAGCCGTATACCAGTTTTAGTGTCTTTTTTGGATCGATAACACGTTTTCCACTGTTGATGCAAGTTATTGAATTTACTTTGAAGTGATTAGTGCCCAATTTTTTGTTCACTCATTAACTGCATTTACTCTTCTCTTCTAGTTTTTGAAAATATAAAATGCTGTCTTAGTTACCCACATTATTTCCCCATTTTGGGTAGGGAATATAGACATACCTCGATAAGCATAAGCCACACTTCTCGGTTTCTTTAATAATGTATTTGGAGAAAAATGTTCCCAGTGATGATTAACTTGACCATGCTAATGCTGATCATTTTGTGATTAGTCTTATCTTTAATTGTTCTGAGGGAACTGGCTCCAATACTTCAAGTTTTTGTGCTAATTTGCATGCCTTGCTCTTGAGTGAGATGGTTATACATCGTTTCTTGGTGTGGTTCTGTTGTGGGAGAGAGAATTATGCTTAAATTAAGTTGATGTATTTGCAATGCTTTTGTTATTTGTTATTTGTTATTTGTTTTTTTTTTTGCAAATATATATACTTGCATGTAGATTAATATATCTTCCCCCTCTGATATGAAGTCTTTTTCAAATTTCATTTAGTTCTTGTTTTGTTTTTAGATCGTAAGGACTCTGAACTTTTGATTTGGAAAACTTAAATTTTACACTTTTCAGTTCACTTTATCCAGGAGTCTCTCAGTGATGTCTGTCTATGTGCAATTTTGTTATGAACTTTGTGTGTATGTCAGTTATTCAGCTCATGCTGGGAGGAGGATCTTATTGCACGTGCATGTACTTGAATAAAGTTGTTCTGTTTGCCTGCTTACGCACTGTTTCACCTGGCCTGCATTCGCTAATAAAATGATTTTCTTGTATTTCTTCTCAGCTTTACCGCTTCCTTGTTCGTCGAACTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAAGGTTAACAAGCCTCCACTTTCACTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGTTGGTTAAATCCTGTAGTATTGTAATTTTATTTTTTGGTTCTTTAATATTTGTTGTTGCATGTATGAGATATCTGTAACTTTGTACATTCATTTGTGATGTAATAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATACTCGTGTCTATGAAGTTCCGGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATCGAAAAGGCTGGCGGGGAGTGTTTGACATTTGACCAACTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTATGAATGTTTTTTCAGCTAGGAATGTTTATTCATATATCACATCTCTTGTAGAATGTAGGTTACTCGAGAGTTTCCAACAGTGATTTAATAGTTTATATTTTGGGGTTTGAATCATCTCTTGGGCTCCATCTGCAGGTTCTTCTTAGAGGTCCAAAGAACTCCCGGGAGGCAGTGAAGCATTTTGGTCCTGCACCCGGTGTACCACACAGCCATTCCAAACCATATGTGAGGTCCAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAAGAGAAACAGCAGGGGATATAGGGTTTGATTTGATCTTACTTTTCCAACCTAATTCAATGCCAGTGTGTGTTTATTTTGAAATTCAATATCCAAATTTTGCTAGATTTTAGTTGCATGTCAGTTGTTCCATCTCTTCTCAAGGTTTTGCCATAATATTGTTGATTATGAATTTATTGAATGATATTCAGTGGGACTTCATAGAGTTTCTTTTGCTATATTATGTGATGGCCATTTTCTGTTCTGTTTAT

mRNA sequence

CCGATCCAGCCCACAGAGAATGGCAAGGCCGATCCACCACTATAAAATAGGTTTAAAAACCCTTATTTTCACCTTCGCCGTCCTTCCACCCCAGCACCAGAACGCCGCTCCTAAACTCGGAGAGCTCCAATGGGGATCGATCTTGTAGCAGGAGGTAAGAGTAAGAAGACCAAGAGGACTGCACCCAAATCTGATGATATCTACCTTAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGAACTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAAGGTTAACAAGCCTCCACTTTCACTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATACTCGTGTCTATGAAGTTCCGGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATCGAAAAGGCTGGCGGGGAGTGTTTGACATTTGACCAACTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTTCTTCTTAGAGGTCCAAAGAACTCCCGGGAGGCAGTGAAGCATTTTGGTCCTGCACCCGGTGTACCACACAGCCATTCCAAACCATATGTGAGGTCCAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAAGAGAAACAGCAGGGGATATAGGGTTTGATTTGATCTTACTTTTCCAACCTAATTCAATGCCAGTGTGTGTTTATTTTGAAATTCAATATCCAAATTTTGCTAGATTTTAGTTGCATGTCAGTTGTTCCATCTCTTCTCAAGGTTTTGCCATAATATTGTTGATTATGAATTTATTGAATGATATTCAGTGGGACTTCATAGAGTTTCTTTTGCTATATTATGTGATGGCCATTTTCTGTTCTGTTTAT

Coding sequence (CDS)

ATGGGGATCGATCTTGTAGCAGGAGGTAAGAGTAAGAAGACCAAGAGGACTGCACCCAAATCTGATGATATCTACCTTAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGAACTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAAGGTTAACAAGCCTCCACTTTCACTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATACTCGTGTCTATGAAGTTCCGGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATCGAAAAGGCTGGCGGGGAGTGTTTGACATTTGACCAACTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTTCTTCTTAGAGGTCCAAAGAACTCCCGGGAGGCAGTGAAGCATTTTGGTCCTGCACCCGGTGTACCACACAGCCATTCCAAACCATATGTGAGGTCCAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAAGAGAAACAGCAGGGGATATAGGGTTTGA

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of Bhi05G000371 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 327.0 bits (837), Expect = 9.8e-90
Identity = 164/187 (87.70%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL++FM GKE KIAV+VGTITDD RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi05G000371 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 325.5 bits (833), Expect = 2.8e-89
Identity = 163/187 (87.17%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL++FM GK+ KIAV+VGTITDD RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi05G000371 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-52
Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 54  MSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIE 113
           MSKVNK PLSLSRL+++M GK+ KIAV+VGT+TDD R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Bhi05G000371 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-52
Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 54  MSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIE 113
           MSKVNK PLSLSRL+++M GK+ KIAV+VGT+TDD R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Bhi05G000371 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-88
Identity = 164/187 (87.70%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL++FM GKE KIAV+VGTITDD RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi05G000371 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.0e-88
Identity = 163/187 (87.17%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL++FM GK+ KIAV+VGTITDD RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi05G000371 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 7.3e-82
Identity = 154/184 (83.70%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECLTFD 123
           LSRLI++M+GKE KI VVVG +TDD RVY+VP +KV AL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYRV 188
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of Bhi05G000371 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 288.1 bits (736), Expect = 7.1e-77
Identity = 146/188 (77.66%), Postives = 165/188 (87.77%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL+++M GK+ KIAV+VGT+TDD R+ +VPAL V ALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYRV 188
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Bhi05G000371 vs. ExPASy Swiss-Prot
Match: Q4GXG7 (60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.2e-65
Identity = 124/188 (65.96%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGID +     +K +RT PKS D+YL+LLVKLYR+L RRTG+ FN +ILKRLFMSK+ +P
Sbjct: 1   MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRP 60

Query: 61  PLSLSRLIQFMK--GKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGE 120
           P+SLS++++FMK  G+E   AV+VGT+TDD+R++E+P L + ALR T+TARA I KAGGE
Sbjct: 61  PISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGE 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARG 180
            +TFDQLALR+P G  TVLL+G +N+REAVKHFGPAPGVPHSH+KP VRSKGRKFERARG
Sbjct: 121 VITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARG 180

Query: 181 KRNSRGYR 187
           +R S GY+
Sbjct: 181 RRRSCGYK 187

[Close]

BLAST of Bhi05G000371 vs. ExPASy TrEMBL
Match: A0A5A7U942 (60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004150 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRLIQFMKGKESKIAVVVGTITDD RVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi05G000371 vs. ExPASy TrEMBL
Match: A0A1S3BPL9 (60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRLIQFMKGKESKIAVVVGTITDD RVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi05G000371 vs. ExPASy TrEMBL
Match: A0A0A0LWD1 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569250 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 58  MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 117

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRLIQF KGKESKIAVVVGTITDD RVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 118 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 177

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 178 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 237

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 238 NSRGYRV 244

[Close]

BLAST of Bhi05G000371 vs. ExPASy TrEMBL
Match: A0A6J1EUD5 (60S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437842 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSRVNKP 60

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRLIQFMKGKESKIAVVVGTITDD RVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi05G000371 vs. ExPASy TrEMBL
Match: A0A6J1I1I5 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111469018 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.6e-94
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 28  MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 87

Query: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDTRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRLIQFMKGKESKIAVVVGTITDD RVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 88  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 147

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 148 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 207

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 208 NSRGYRV 214

The following BLAST results are available for this feature:

BLAST of Bhi05G000371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05590.1	9.8e-90	87.70	ribosomal protein L18	[more]
AT5G27850.1	2.8e-89	87.17	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.1	2.8e-52	74.81	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	2.8e-52	74.81	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Bhi05G000371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42791	1.4e-88	87.70	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
Q940B0	4.0e-88	87.17	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
O65729	7.3e-82	83.70	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	7.1e-77	77.66	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4GXG7	6.2e-65	65.96	60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1	[more]

BLAST of Bhi05G000371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U942	2.7e-95	98.93	60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPL9	2.7e-95	98.93	60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1	[more]
A0A0A0LWD1	1.3e-94	98.40	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1EUD5	1.3e-94	98.40	60S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437842 P...	[more]
A0A6J1I1I5	6.6e-94	97.86	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111469018 PE=3 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 e-value: 2.5E-95 score: 317.2
None	No IPR available	GENE3D	3.100.10.10		coord: 1..187 e-value: 1.7E-100 score: 336.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..187
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..186
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..186
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000371	Bhi05M000371	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome