Bhi05G000352 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000352
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Cytochrome c oxidase subunit 6B
Location	chr5: 12146598 .. 12146822 (-)
RNA-Seq Expression	Bhi05G000352
Synteny	Bhi05G000352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACATAAGCAAAGTGACACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTCGAAGCCTCCCCCACCGTCTTCCTCCTCCGTTCCCTCCGCTCAGACAAACCTCGACGGTAACGACGACGATCGCCGCCGTGGAGGCGAAGACACAGACAATAAGGTCTCTTCTTAA

mRNA sequence

ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACATAAGCAAAGTGACACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTCGAAGCCTCCCCCACCGTCTTCCTCCTCCGTTCCCTCCGCTCAGACAAACCTCGACGGTAACGACGACGATCGCCGCCGTGGAGGCGAAGACACAGACAATAAGGTCTCTTCTTAA

Coding sequence (CDS)

ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACATAAGCAAAGTGACACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTCGAAGCCTCCCCCACCGTCTTCCTCCTCCGTTCCCTCCGCTCAGACAAACCTCGACGGTAACGACGACGATCGCCGCCGTGGAGGCGAAGACACAGACAATAAGGTCTCTTCTTAA

Protein sequence

MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGGEDTDNKVSS

Homology

[Close]

BLAST of Bhi05G000352 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-12
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
          MS+AQ+DPHDKMRSRDISKV RG+QAPRPAH  GTVS  PPP + +   A+    G + D
Sbjct: 1  MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRAKRGDSGRETD 58

[Close]

BLAST of Bhi05G000352 vs. ExPASy Swiss-Prot
Match: Q9LPJ2 (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-11
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
          MS+AQ+DPHDKMRSRDISKV RG+QAPRPAH  GTVS  PPP + +   A+    G + D
Sbjct: 1  MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRAKRGDSGRETD 58

[Close]

BLAST of Bhi05G000352 vs. ExPASy TrEMBL
Match: A0A0A0LEH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.3e-28
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
          MSA+Q+DPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61 RRRGGEDTDNKV 73
          RRRG ED DNKV
Sbjct: 61 RRRGSEDRDNKV 72

[Close]

BLAST of Bhi05G000352 vs. ExPASy TrEMBL
Match: A0A5D3E4S8 (Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004020 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
          MSA+Q+DPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSS+SVPSAQT    NDD 
Sbjct: 1  MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQT----NDDH 60

Query: 61 RRRGGE--DTDNKV 73
          RR G E  D DNKV
Sbjct: 61 RRSGSEDKDKDNKV 70

[Close]

BLAST of Bhi05G000352 vs. ExPASy TrEMBL
Match: A0A1S3CQ05 (putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC103503497 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
          MSA+Q+DPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSS+SVPSAQT    NDD 
Sbjct: 1  MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQT----NDDH 60

Query: 61 RRRGGE--DTDNKV 73
          RR G E  D DNKV
Sbjct: 61 RRSGSEDKDKDNKV 70

[Close]

BLAST of Bhi05G000352 vs. ExPASy TrEMBL
Match: A0A6J1F3D0 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC111439604 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 13 RSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGGEDTDNKV 72
          R RDISKV RGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN  DRR GG+D D+KV
Sbjct: 6  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN-SDRRHGGKDKDSKV 64

[Close]

BLAST of Bhi05G000352 vs. ExPASy TrEMBL
Match: V7CH48 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G003400g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-15
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
          MSAAQVDPHDKMR+RD++KV RG+QAPRPAH+YGTVS PPPPSS+  P    N +G  D 
Sbjct: 1  MSAAQVDPHDKMRARDVNKVARGQQAPRPAHQYGTVSPPPPPSSTHTPGDTNNKEGKSDI 60

Query: 61 RRRGGE 67
            +G E
Sbjct: 61 SEKGAE 66

The following BLAST results are available for this feature:

BLAST of Bhi05G000352 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32710.1	5.5e-12	61.67	Cytochrome c oxidase, subunit Vib family protein	[more]

BLAST of Bhi05G000352 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPJ2	7.8e-11	61.67	Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Bhi05G000352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH8	7.3e-28	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1	[more]
A0A5D3E4S8	1.5e-20	79.73	Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CQ05	1.5e-20	79.73	putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1F3D0	1.9e-15	81.67	cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
V7CH48	9.2e-15	65.15	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G003400g PE=4 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 1..55
None	No IPR available	PANTHER	PTHR46281:SF17	CYTOCHROME C OXIDASE SUBUNIT 6B-3-LIKE	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000352	Bhi05M000352	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV