Bhi04G001780 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001780
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr4: 60512980 .. 60513264 (+)
RNA-Seq Expression	Bhi04G001780
Synteny	Bhi04G001780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAAAAACAGGCAAAAGAAAGCTCATTCATCTTTTTCAATCTTTAGTTTTTTCAAATCAAGAAGGGGTGGAAAAGGAGACCACTACGACCAAGGTGGCTCTCGGTCAAACGAGATGTCAAGATCGAGCAAGGTGTGGCCGAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAATCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGAATCTATCGAAATCGTGCTTTTGATTCTGAGAGTCAAACTGTCACTATACCTCACAATGTGTAA

mRNA sequence

ATGGGAGGCAAAAACAGGCAAAAGAAAGCTCATTCATCTTTTTCAATCTTTAGTTTTTTCAAATCAAGAAGGGGTGGAAAAGGAGACCACTACGACCAAGGTGGCTCTCGGTCAAACGAGATGTCAAGATCGAGCAAGGTGTGGCCGAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAATCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGAATCTATCGAAATCGTGCTTTTGATTCTGAGAGTCAAACTGTCACTATACCTCACAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCAAAAACAGGCAAAAGAAAGCTCATTCATCTTTTTCAATCTTTAGTTTTTTCAAATCAAGAAGGGGTGGAAAAGGAGACCACTACGACCAAGGTGGCTCTCGGTCAAACGAGATGTCAAGATCGAGCAAGGTGTGGCCGAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAATCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGAATCTATCGAAATCGTGCTTTTGATTCTGAGAGTCAAACTGTCACTATACCTCACAATGTGTAA

Protein sequence

MGGKNRQKKAHSSFSIFSFFKSRRGGKGDHYDQGGSRSNEMSRSSKVWPSDEDKAHHWVAESGIDRKAKDYIDRIYRNRAFDSESQTVTIPHNV

Homology

[Close]

BLAST of Bhi04G001780 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.9e-34
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MGGKNRQKKAHSSFSIFSFFKSRRGGKGDHYDQGGSRSNEMSRSSKVWPSDEDKAHHWVA 60
          MGG NRQKK+HSSFSIFSFFKSRRG KGDHYD GG+  +EM RS+KVWPSDEDKAHHWVA
Sbjct: 1  MGG-NRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVA 60

Query: 61 ESGIDRKAKDYIDRIYRNRAFDSESQTVTIPHN 94
          E GIDRKAKDYIDRIYRNR F+SE QTVTI  N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Bhi04G001780 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.6e-34
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MGGKNRQKKAHSSFSIFSFFKSRRGGKGDHYDQGGSRSNEMSRSSKVWPSDEDKAHHWVA 60
          MGG NRQKK+HSSFSIFSFFKS+RG KGDHYD GG+  +EM RS+KVWPSDEDKAHHW+A
Sbjct: 1  MGG-NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIA 60

Query: 61 ESGIDRKAKDYIDRIYRNRAFDSESQTVTIPHN 94
          E GIDRKAKDYIDRIYRNR F+SE QTVTI  N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Bhi04G001780 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 75/93 (80.65%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGGKNRQKKAHSSFSIFSFFKSRRGGKGDHYDQGGSRSNEMSRSSKVWPSDEDKAHHWVA 60
          MGG NRQKKAH+SFSIFSFFKSRRG KGDH +  GS  +EM RS KVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 ESGIDRKAKDYIDRIYRNRAFDSESQTVTIPHN 94
          E GIDRKAKDYIDRIYRNR F+SE QTVTI  N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of Bhi04G001780 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 73/93 (78.49%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGGKNRQKKAHSSFSIFSFFKSRRGGKGDHYDQGGSRSNEMSRSSKVWPSDEDKAHHWVA 60
          MGG NRQKK+HSSFSIFSFFKSRRG KGD+ +  GS  +EM RS KVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 ESGIDRKAKDYIDRIYRNRAFDSESQTVTIPHN 94
          E GIDRKAKDYIDRIYRNR F+SE QT+TI  N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPN 93

[Close]

BLAST of Bhi04G001780 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MGGKNRQKKAHSSFSIFSFFKSRRGGKGDHYDQGGSRSNEMSRSSKVWPSDEDKAHHWVA 60
          MGG ++ KK+HSSFS FSF KS+   KGDHYD GGS  +E SRS KVWPSDEDKAHHWVA
Sbjct: 1  MGG-HKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVA 60

Query: 61 ESGIDRKAKDYIDRIYRNRAFDSESQTVTIPHNV 95
          E GIDRKAKDYIDRIYRNR F+SE QTVTIP NV
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

The following BLAST results are available for this feature:

BLAST of Bhi04G001780 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001780 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW1	3.9e-34	82.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2	8.6e-34	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6	2.5e-33	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A5A7SWT9	2.1e-32	78.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K8V3	5.2e-31	76.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..52
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001780	Bhi04M001780	mRNA