Bhi04G001745 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001745
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	cucumber peeling cupredoxin-like
Location	chr4: 59327781 .. 59327987 (+)
RNA-Seq Expression	Bhi04G001745
Synteny	Bhi04G001745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACATCAATGAGTTCCTTTGCCTGCCTCTTCTTCTTCCTCGGAGCTCTCGTACACGTCAGTGTTGCCGTCGAACATAAGGTCGGAGGCAATTTCGGTTGGAACCTACCATCGACTCCCACCTTCTTCTCTGATTGGGCTAACAGTAGACCTTTCTTCGTTGGCGATAAACTCAGTAATTATTACCCTTTTTTAAATACTTAA

mRNA sequence

ATGAATACATCAATGAGTTCCTTTGCCTGCCTCTTCTTCTTCCTCGGAGCTCTCGTACACGTCAGTGTTGCCGTCGAACATAAGGTCGGAGGCAATTTCGGTTGGAACCTACCATCGACTCCCACCTTCTTCTCTGATTGGGCTAACAGTAGACCTTTCTTCGTTGGCGATAAACTCAGTAATTATTACCCTTTTTTAAATACTTAA

Coding sequence (CDS)

ATGAATACATCAATGAGTTCCTTTGCCTGCCTCTTCTTCTTCCTCGGAGCTCTCGTACACGTCAGTGTTGCCGTCGAACATAAGGTCGGAGGCAATTTCGGTTGGAACCTACCATCGACTCCCACCTTCTTCTCTGATTGGGCTAACAGTAGACCTTTCTTCGTTGGCGATAAACTCAGTAATTATTACCCTTTTTTAAATACTTAA

Protein sequence

MNTSMSSFACLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKLSNYYPFLNT

Homology

[Close]

BLAST of Bhi04G001745 vs. ExPASy Swiss-Prot
Match: P29602 (Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-05
Identity = 19/38 (50.00%), Postives = 25/38 (65.79%), Query Frame = 0


Query: 27 HKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKLSNYYP 65
          H VG N GW++PS+P F+S WA  + F VGD L   +P
Sbjct: 5  HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFP 42

[Close]

BLAST of Bhi04G001745 vs. ExPASy TrEMBL
Match: A0A5D3D4H3 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00010 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-19
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 3  TSMSSFA-CLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKL 60
          T+MSSFA  +FFFLGA+VHV VAVEHKVGGNFGWNLPSTPTFFSDWA++R FFV DKL
Sbjct: 4  TTMSSFAFVIFFFLGAIVHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVNDKL 61

[Close]

BLAST of Bhi04G001745 vs. ExPASy TrEMBL
Match: A0A1S3CJW8 (cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103501290 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-19
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 3  TSMSSFA-CLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKL 60
          T+MSSFA  +FFFLGA+VHV VAVEHKVGGNFGWNLPSTPTFFSDWA++R FFV DKL
Sbjct: 4  TTMSSFAFVIFFFLGAIVHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVNDKL 61

[Close]

BLAST of Bhi04G001745 vs. ExPASy TrEMBL
Match: A0A0A0KAM8 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G018590 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 3  TSMSSFACLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKL 60
          T++SSFA  F  LG L+HV VAVEHKVGGNFGWNLPSTPTFFSDWA++R FFV DKL
Sbjct: 4  TTISSFAFFFLLLGVLLHVGVAVEHKVGGNFGWNLPSTPTFFSDWASNRTFFVDDKL 60

[Close]

BLAST of Bhi04G001745 vs. ExPASy TrEMBL
Match: A0A6J1DQ85 (cucumber peeling cupredoxin-like OS=Momordica charantia OX=3673 GN=LOC111023215 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1  MNTSMSSFACLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKL 60
          M T+MS     FFF+GAL+HV VAV+H+VGG+FGWNLP  PTFFSDWA +R FFV DKL
Sbjct: 1  MTTTMSPSLACFFFIGALLHVVVAVDHRVGGDFGWNLPPIPTFFSDWARNRTFFVDDKL 59

[Close]

BLAST of Bhi04G001745 vs. ExPASy TrEMBL
Match: A0A6J1CSQ4 (umecyanin-like OS=Momordica charantia OX=3673 GN=LOC111014412 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 5  MSSFACLFFFLGALVHVSVAVEHKVGGNFGWNLPSTPTFFSDWANSRPFFVGDKL 60
          MSS A LFFF+ AL+H   AV+H VGG+FGWNLP TPTFFSDWA +R FFVGD L
Sbjct: 6  MSSMASLFFFIVALLHAVAAVDHHVGGDFGWNLPPTPTFFSDWARNRTFFVGDTL 60

The following BLAST results are available for this feature:

BLAST of Bhi04G001745 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001745 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29602	4.5e-05	50.00	Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3	[more]

BLAST of Bhi04G001745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4H3	5.7e-19	82.76	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CJW8	5.7e-19	82.76	cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103501290 PE=4 SV...	[more]
A0A0A0KAM8	1.8e-17	77.19	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G018590...	[more]
A0A6J1DQ85	2.9e-15	67.80	cucumber peeling cupredoxin-like OS=Momordica charantia OX=3673 GN=LOC111023215 ...	[more]
A0A6J1CSQ4	2.5e-14	70.91	umecyanin-like OS=Momordica charantia OX=3673 GN=LOC111014412 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 22..66 e-value: 1.2E-7 score: 33.9
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 24..63
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 25..68 score: 15.298183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001745	Bhi04M001745	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity