Bhi04G000825 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000825
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Histone deacetylase 18-like protein
Location	chr4: 25520905 .. 25522882 (+)
RNA-Seq Expression	Bhi04G000825
Synteny	Bhi04G000825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAGAAGAGAAGTTGATTCTCTTAATTGGTAACAACTAACAACATAAAATTGTCAACCCAAAGATTGTTCCAATCAAAGCAAAATTTCTGACCCACTTTTGGGTGTTCCAAACTTGCTGGACTTCCCTTGCCGTCGTTCTCAACTACCGTGAGCAGACCAACAACCTCCGTCGCCGCCGCCACCTTCTTCTTTCTTCTTCTTTTTAACTTCTCCATATCCCATCTCTCTCTCCCCAAAATCCACAGTTCCATAGAAACACACAGAGAGATACATCGAAAATTGGCTATGGCTATGTCTATGGCCACCACCTGCTGCCTGAACAACCTCAATCCGCCGCCGCAGTTGCCCCAAAACTCCACCACATCCGTCAACAATCAATTGGTTCCATGGTAAGAAAATTACTCTATAATCATTTTGTTTTTATACTTTTATCAACATTTTCCCTATGTTTTCATAAATTAAGCCAACTTCTTCACGTCATTTTTTTTTAAAATGTAGTTCGTAGAATTGAATTTGAATTTATATGTGTATGGATTCTAGTCTTTCAATATTGTTCAATCTTCAAGAGTTTTAAGAAGTCTTTAATTTAGTTTTTAATTCCAAATAGGAGGGACCCGTATATATCGATAAAATTTCACCATTGAAAAAAAATAAAAAAATGACATTAGGTAGAGTTTAGACCACCTCTAATCTCATGCTCCCATTTCCTTTACACAAAAAAGATTTAGAAAACATATAATCTAAAAAAAAATTGTCACGTGGACACACAAAAATAGTTATAGCCCTTTGTTCTCTTTGTAAACAAGTAAAATTATATCTATGCCTAAATATTATGATTCAGTTGGAACATCCATCAAGTTGTTATTAGTCTCATTTTTTAATTTCATTATAAAATTTCATGTTTACAACTTAGTTTTTTATTGCAATAGTTAAATTGCAAATTCGATCGGATTGTTTTGAGAAAGTTAGAATCTGTTCTCTGTAGTTGTAAATATTGAACTTTATTCCTCTAGTTTGATTAAACCTCGTAAATGATCCTTATGACTCGATAAAATCACGAACCCTAACTTTTTCCAAAACCAATTTACAATTTAAGCAACAATAATTTATAATTTTCACAAATAAAAAATGAAATGAAATTGTTATAGGCCAAACAAACAAAAAGAAAATTATAATTCGTCTCCAATTCCATATTCAGGGTTCAATCATTTTGTCCTGCAAAGATTTGGTTGTGTGATTGAAGAAACTGATAGGCTTTGAAATTAAATTAGAAATCAGGGATTGAATTTAAAGAAATGTGTTTTATTGAACAGGAATGGAAATGGAGAATGGTGGCAAAAACGGCGCGTTTTGGTGGTGGCCGGAGTGGCAACGGCGCTGATAATGGCCGGAGAAAGCGGTGGCGTTGAAATGGGAAATGTTAACATTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCTCAGTGGCGCCTCAATTCCCTCGAAACCGTCGTGCCGGAGAATCTTCCTAGGCCGACCGGCCGCCGGAGATGGGACCCCGCCGCCCTTCCTCACACGGCGCCGGCGCCTCAACTTCGAACCACACATACAACTTCCCTTTCTACTCGCTGCTTCTCCTTGTAAATAACCAAAACCAATTTACAATTTACAACGCAATTTACCATTTCTTCAAATATATATCATTTTACAATAATAATTAAAAAAAAAAACACACATTAAAACGTCGGATCACCTCATCAATTATTCAATCATAGATTCTCACGTCTCAAATTAATTTTGCGTTCCTTTTTCTTTTGTATATGAGATTAGAGTGTTGAGTCGATAAAGTAGTGTTTTTTACAATATTATAATAAAATAAACTATAACGGATATTTTTTAAATCATCCGTGGTAATTTGTTGAAGTCAAATGTTTGAATCATCATCTCTCCACTTATTGTATGGTATAAAAAAAATAACTAATATTTTTT

mRNA sequence

ATTACAGAAGAGAAGTTGATTCTCTTAATTGGTAACAACTAACAACATAAAATTGTCAACCCAAAGATTGTTCCAATCAAAGCAAAATTTCTGACCCACTTTTGGGTGTTCCAAACTTGCTGGACTTCCCTTGCCGTCGTTCTCAACTACCGTGAGCAGACCAACAACCTCCGTCGCCGCCGCCACCTTCTTCTTTCTTCTTCTTTTTAACTTCTCCATATCCCATCTCTCTCTCCCCAAAATCCACAGTTCCATAGAAACACACAGAGAGATACATCGAAAATTGGCTATGGCTATGTCTATGGCCACCACCTGCTGCCTGAACAACCTCAATCCGCCGCCGCAGTTGCCCCAAAACTCCACCACATCCGTCAACAATCAATTGGTTCCATGGAATGGAAATGGAGAATGGTGGCAAAAACGGCGCGTTTTGGTGGTGGCCGGAGTGGCAACGGCGCTGATAATGGCCGGAGAAAGCGGTGGCGTTGAAATGGGAAATGTTAACATTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCTCAGTGGCGCCTCAATTCCCTCGAAACCGTCGTGCCGGAGAATCTTCCTAGGCCGACCGGCCGCCGGAGATGGGACCCCGCCGCCCTTCCTCACACGGCGCCGGCGCCTCAACTTCGAACCACACATACAACTTCCCTTTCTACTCGCTGCTTCTCCTTGTAAATAACCAAAACCAATTTACAATTTACAACGCAATTTACCATTTCTTCAAATATATATCATTTTACAATAATAATTAAAAAAAAAAACACACATTAAAACGTCGGATCACCTCATCAATTATTCAATCATAGATTCTCACGTCTCAAATTAATTTTGCGTTCCTTTTTCTTTTGTATATGAGATTAGAGTGTTGAGTCGATAAAGTAGTGTTTTTTACAATATTATAATAAAATAAACTATAACGGATATTTTTTAAATCATCCGTGGTAATTTGTTGAAGTCAAATGTTTGAATCATCATCTCTCCACTTATTGTATGGTATAAAAAAAATAACTAATATTTTTT

Coding sequence (CDS)

ATGGCTATGTCTATGGCCACCACCTGCTGCCTGAACAACCTCAATCCGCCGCCGCAGTTGCCCCAAAACTCCACCACATCCGTCAACAATCAATTGGTTCCATGGAATGGAAATGGAGAATGGTGGCAAAAACGGCGCGTTTTGGTGGTGGCCGGAGTGGCAACGGCGCTGATAATGGCCGGAGAAAGCGGTGGCGTTGAAATGGGAAATGTTAACATTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCTCAGTGGCGCCTCAATTCCCTCGAAACCGTCGTGCCGGAGAATCTTCCTAGGCCGACCGGCCGCCGGAGATGGGACCCCGCCGCCCTTCCTCACACGGCGCCGGCGCCTCAACTTCGAACCACACATACAACTTCCCTTTCTACTCGCTGCTTCTCCTTGTAA

Protein sequence

MAMSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWNGNGEWWQKRRVLVVAGVATALIMAGESGGVEMGNVNIVDSRKWSEERMCPQWRLNSLETVVPENLPRPTGRRRWDPAALPHTAPAPQLRTTHTTSLSTRCFSL

Homology

[Close]

BLAST of Bhi04G000825 vs. TAIR 10
Match: AT2G25625.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 52/156 (33.33%), Postives = 71/156 (45.51%), Query Frame = 0


Query: 3   MSMATTCCLNNLNPPPQLPQNSTTSVNNQL-----VPWNGNGEWW-QKRRVLVVAGVATA 62
           M+   +CCLN     P L  NS  S+ + L     + W    E   +K +   V GVA  
Sbjct: 1   MAGRISCCLN----LPPLDSNSAQSLASLLKTTSKISWRTENETEPRKNKCSFVLGVAAT 60

Query: 63  LIMAG-------------ESGGVEMGNVNIVDSRKWSEERMCPQWRLNSLETVVPENLPR 122
           +++ G                 VE     +V  R+WS++R CP W  NSLET+VPENLPR
Sbjct: 61  VVIGGIQINDVASVEAAVVKSPVEEMAAGVVPPRRWSDKRTCPPWLENSLETIVPENLPR 120

Query: 123 PTGRRRWDPAALPHTAPAPQLRTTHTTSLSTRCFSL 140
           P+  RR + A L     AP +    T      CFS+
Sbjct: 121 PSAHRRLELAGLA-KGDAPPVGVVMTRVNRGGCFSV 151

[Close]

BLAST of Bhi04G000825 vs. TAIR 10
Match: AT2G25625.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 51/157 (32.48%), Postives = 70/157 (44.59%), Query Frame = 0


Query: 3   MSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWN-------GNGEWWQKRRVLVVAGVAT 62
           M+   +CCLN     P L  NS  S+ + L   +        N    +K +   V GVA 
Sbjct: 1   MAGRISCCLN----LPPLDSNSAQSLASLLKTTSKISCRRTENETEPRKNKCSFVLGVAA 60

Query: 63  ALIMAG-------------ESGGVEMGNVNIVDSRKWSEERMCPQWRLNSLETVVPENLP 122
            +++ G                 VE     +V  R+WS++R CP W  NSLET+VPENLP
Sbjct: 61  TVVIGGIQINDVASVEAAVVKSPVEEMAAGVVPPRRWSDKRTCPPWLENSLETIVPENLP 120

Query: 123 RPTGRRRWDPAALPHTAPAPQLRTTHTTSLSTRCFSL 140
           RP+  RR + A L     AP +    T      CFS+
Sbjct: 121 RPSAHRRLELAGLA-KGDAPPVGVVMTRVNRGGCFSV 152

[Close]

BLAST of Bhi04G000825 vs. ExPASy TrEMBL
Match: A0A0A0LLU6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379360 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.2e-57
Identity = 110/137 (80.29%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 3   MSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWNGNGEWWQKRRVLVVAGVATALIMAGE 62
           M MATTCCLNNLNPPP+L QNST S N  L+P NGNGEWW+KR VL  AGV TAL+M+GE
Sbjct: 1   MGMATTCCLNNLNPPPRLHQNSTASTNAPLLPPNGNGEWWRKRCVLGAAGVMTALVMSGE 60

Query: 63  SGGVEMGNVNIVDSRKWSEERMCPQWRLNSLETVVPENLPRPTGRRRWDPAALPHTAPAP 122
           S GVEM N+N VDSRKWSEERMCPQWRLNSLET+VPENLPRP  RRRWDPAALP T PAP
Sbjct: 61  SSGVEMENLNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPQTRPAP 120

Query: 123 QLRTTHTTSLSTRCFSL 140
           QLRTT+TTSLSTRCFS+
Sbjct: 121 QLRTTNTTSLSTRCFSM 137

[Close]

BLAST of Bhi04G000825 vs. ExPASy TrEMBL
Match: A0A1S3BBI5 (uncharacterized protein LOC103488267 OS=Cucumis melo OX=3656 GN=LOC103488267 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.2e-57
Identity = 112/140 (80.00%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 3   MSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWNGNG-EWWQKRRVLVVAGVATALIMAG 62
           M+MATTCC+NNLNPPP+L QNST S NN L+P NG+G +WW+KR VL VAGV TALIM+G
Sbjct: 1   MAMATTCCVNNLNPPPRLYQNSTASTNNPLLPLNGSGDQWWRKRCVLGVAGVMTALIMSG 60

Query: 63  ESGGVEMGNVN--IVDSRKWSEERMCPQWRLNSLETVVPENLPRPTGRRRWDPAALPHTA 122
           ESGGVEMGNVN  + +SRKWSEERMCPQWRLNSLET+VPENLPRP  RRRWDPAALPHTA
Sbjct: 61  ESGGVEMGNVNSFVDNSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPHTA 120

Query: 123 PAPQLRTTHTTSLSTRCFSL 140
           PAPQLRTT+T SLSTRCFS+
Sbjct: 121 PAPQLRTTNTASLSTRCFSM 140

[Close]

BLAST of Bhi04G000825 vs. ExPASy TrEMBL
Match: A0A5A7VGF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002860 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.3e-56
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 3   MSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWNGNG-EWWQKRRVLVVAGVATALIMAG 62
           M+MATTCC+NNLNPPP+L QNST S NN L+P NG+G +WW+KR VL VAGV TAL+M+G
Sbjct: 1   MAMATTCCVNNLNPPPRLYQNSTASTNNPLLPLNGSGDQWWRKRCVLGVAGVMTALVMSG 60

Query: 63  ESGGVEMGNVN--IVDSRKWSEERMCPQWRLNSLETVVPENLPRPTGRRRWDPAALPHTA 122
           ESGGVEMGNVN  + +SRKWSEERMCPQWRLNSLET+VPENLPRP  RRRWDPAALPHTA
Sbjct: 61  ESGGVEMGNVNSFVDNSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPHTA 120

Query: 123 PAPQLRTTHTTSLSTRCFSL 140
           PAPQLRTT+  SLSTRCFS+
Sbjct: 121 PAPQLRTTNRASLSTRCFSM 140

[Close]

BLAST of Bhi04G000825 vs. ExPASy TrEMBL
Match: A0A6J1KBE7 (uncharacterized protein LOC111492380 OS=Cucurbita maxima OX=3661 GN=LOC111492380 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.5e-53
Identity = 107/137 (78.10%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 3   MSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWNGNGEWWQKRRVLVVAGVATALIMAGE 62
           M+M+TTCCLNNLNPPP+L   STT   NQL+P NGNGE WQKR VL V GVA AL M GE
Sbjct: 1   MAMSTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQMVGE 60

Query: 63  SGGVEMGNVNIVDSRKWSEERMCPQWRLNSLETVVPENLPRPTGRRRWDPAALPHTAPAP 122
           SGGVEMG+VN VDSRKWSEERMCPQWRLNSLET+VPENLPRP  RRRW+PAALP T  AP
Sbjct: 61  SGGVEMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT--AP 120

Query: 123 QLRTTHTTSLSTRCFSL 140
           QLRT HT+SLSTRCFS+
Sbjct: 121 QLRTIHTSSLSTRCFSM 135

[Close]

BLAST of Bhi04G000825 vs. ExPASy TrEMBL
Match: A0A6J1EPL8 (uncharacterized protein LOC111436227 OS=Cucurbita moschata OX=3662 GN=LOC111436227 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 110/139 (79.14%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MAMSMATTCCLNNLNPPPQLPQNSTTSVNNQLVPWNGNGEWWQKRRVLVVAGVATALIMA 60
           MAMS  TTCCLNNLNPPP+L   STT   NQL+P NGNGE WQKR VL V GVA AL M 
Sbjct: 1   MAMS-TTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAIALQMV 60

Query: 61  GESGGVEMGNVNIVDSRKWSEERMCPQWRLNSLETVVPENLPRPTGRRRWDPAALPHTAP 120
           GESGGVEMG+VN VDSRKWSEERMCPQWRLNSLET+VPENLPRP  RRRW+PAALP T  
Sbjct: 61  GESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT-- 120

Query: 121 APQLRTTHTTSLSTRCFSL 140
           APQLRT HT+SLSTRCFSL
Sbjct: 121 APQLRTIHTSSLSTRCFSL 136

The following BLAST results are available for this feature:

BLAST of Bhi04G000825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25625.2	1.4e-11	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G25625.1	2.6e-10	32.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

BLAST of Bhi04G000825 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi04G000825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLU6	2.2e-57	80.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379360 PE=4 SV=1	[more]
A0A1S3BBI5	8.2e-57	80.00	uncharacterized protein LOC103488267 OS=Cucumis melo OX=3656 GN=LOC103488267 PE=...	[more]
A0A5A7VGF0	5.3e-56	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1KBE7	5.5e-53	78.10	uncharacterized protein LOC111492380 OS=Cucurbita maxima OX=3661 GN=LOC111492380...	[more]
A0A6J1EPL8	1.6e-52	79.14	uncharacterized protein LOC111436227 OS=Cucurbita moschata OX=3662 GN=LOC1114362...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..121
None	No IPR available	PANTHER	PTHR37210:SF2	EXPRESSED PROTEIN	coord: 3..139
None	No IPR available	PANTHER	PTHR37210	EXPRESSED PROTEIN	coord: 3..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000825	Bhi04M000825	mRNA