Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCATGTACTAGCAAAAGACGTAGGCAGAATCAGGATAGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAATACCTCGAGAGTGCAGACTGGAGCAGGAAACGAGCAGTTTTTTAGATCTGCACAGGAGGTGG GTAAGCTAGAGAGAGTAGGGCCTAGTGATCCAAAAAAGATGTATTGAATAGAACGACTGAAGAAATTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAGCTGACATTGAGGTTTGGTTAAATATGCTTGAGAAATGCTTCGATGTGATGAGCTGTCCTGAGGAGCGAAAAGTCAGATTGGCCACATTCCTGTTGCAGAAGAAGGCAGAGGGATGGTGGAAATCCATATTAGCTAGGCGCAGTGATGCACGTATGTTAGACTGGCAGACTTTCAGAGGCATATTCGAAGACAAGTATTATCCTAACATATATTGTGAGGCAAAGAGAGATGA GTTCCTGGGGCTGAAATAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACCGAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCAAAGGTTTGAACGAGGGTTGCGTTTTGAGATATGGACCTCGGTTACAACCATTGCTAAATGGACGGATTTTTCCCAGTTAGTAGAGACTGCCCTATGTGTGGAGCAAAGTATAACAGAGGAGAAGTCAACAGTGGAGCCTAGTCATGGGGCTTCAACAGTTAGTGGTTTTCGAGGTCGTGAGCAACGGAG GTTCACACCTGGAGTGAATGCTTCAGGCCGTTAAGACTTTAAGCGTCGGTCTGGTGGCTAGTCATCGAGGCAGATGAGTTCAGGTAGTACCTATCAGAGGCAGAGCCAGAGAGCACCTAGTCAGTCTGCTAGTTCAGAAACAAGACCGCAGATGGGTCAGGAGCCCGTTGCTAGTGAAACCAGGAGAACCTGGCAGGAATCAATCGAG GTCAGTGTCTTGTTGCGGTGTCAGGTGTGTTTGTTTACCAATGTGAATCAGCCAGGCATTCAAGAAGATCTGTCCACAGCTGAGAGCAAGCA GTTCAGAGGGACCAAGGTGTTGAATCCCACACAGTTGAGCAGCCGAGAGTCTCAGCGGCTGCAGGAGAGGGCACCAGCGGTGCAAAGCAGAATGAAGTT mRNA sequence
ATGCCACCATGTACTAGCAAAAGACGTAGGCAGAATCAGGATAGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAATACCTCGAGAGTGCAGACTGGAGCAGGAAACGAGCAGTTTTTTAGATCTGCACAGGAGGTGGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAGCTGACATTGAGGTTTGGTTAAATATGCTTGAGAAATGCTTCGATGTGATGAGCTGTCCTGAGGAGCGAAAAGTCAGATTGGCCACATTCCTGTTGCAGAAGAAGGCAGAGGGATGGTGGAAATCCATATTAGCTAGGCGCAGTGATGCACGTATGTTAGACTGGCAGACTTTCAGAGGCATATTCGAAGACAAGTATTATCCTAACATATATTGTGAGGCAAAGAGAGATGAAAAGTATACCGAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCAAAGGTTTGAACGAGGGTTGCGTTTTGAGATATGGACCTCGGTTACAACCATTGCTAAATGGACGGATTTTTCCCAGTTAGTAGAGACTGCCCTATGTGTGGAGCAAAGTATAACAGAGGAGAAGTCAACAGTGGAGCCTAGTCATGGGGCTTCAACAGTTAGTGGTTTTCGAGGTCGTGAGCAACGGAGGCAGATGAGTTCAGGTAGTACCTATCAGAGGCAGAGCCAGAGAGCACCTAGTCAGTCTGCTAGTTCAGAAACAAGACCGCAGATGGGTCAGGAGCCCGTTGCTAGTGAAACCAGGAGAACCTGGCAGGAATCAATCGAGCCAGGCATTCAAGAAGATCTGTCCACAGCTGAGAGCAAGCAAGTCTCAGCGGCTGCAGGAGAGGGCACCAGCGGTGCAAAGCAGAATGAAGTT Coding sequence (CDS)
ATGCCACCATGTACTAGCAAAAGACGTAGGCAGAATCAGGATAGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAATACCTCGAGAGTGCAGACTGGAGCAGGAAACGAGCAGTTTTTTAGATCTGCACAGGAGGTGGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAGCTGACATTGAGGTTTGGTTAAATATGCTTGAGAAATGCTTCGATGTGATGAGCTGTCCTGAGGAGCGAAAAGTCAGATTGGCCACATTCCTGTTGCAGAAGAAGGCAGAGGGATGGTGGAAATCCATATTAGCTAGGCGCAGTGATGCACGTATGTTAGACTGGCAGACTTTCAGAGGCATATTCGAAGACAAGTATTATCCTAACATATATTGTGAGGCAAAGAGAGATGAAAAGTATACCGAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCAAAGGTTTGAACGAGGGTTGCGTTTTGAGATATGGACCTCGGTTACAACCATTGCTAAATGGACGGATTTTTCCCAGTTAGTAGAGACTGCCCTATGTGTGGAGCAAAGTATAACAGAGGAGAAGTCAACAGTGGAGCCTAGTCATGGGGCTTCAACAGTTAGTGGTTTTCGAGGTCGTGAGCAACGGAGGCAGATGAGTTCAGGTAGTACCTATCAGAGGCAGAGCCAGAGAGCACCTAGTCAGTCTGCTAGTTCAGAAACAAGACCGCAGATGGGTCAGGAGCCCGTTGCTAGTGAAACCAGGAGAACCTGGCAGGAATCAATCGAGCCAGGCATTCAAGAAGATCTGTCCACAGCTGAGAGCAAGCAAGTCTCAGCGGCTGCAGGAGAGGGCACCAGCGGTGCAAAGCAGAATGAAGTT Protein sequence
MPPCTSKRRRQNQDRTQDPTQGQSERGTNTSRVQTGAGNEQFFRSAQEVGATVFEGSTDPADIEVWLNMLEKCFDVMSCPEERKVRLATFLLQKKAEGWWKSILARRSDARMLDWQTFRGIFEDKYYPNIYCEAKRDEKYTELSRYADVIVASESDRCQRFERGLRFEIWTSVTTIAKWTDFSQLVETALCVEQSITEEKSTVEPSHGASTVSGFRGREQRRQMSSGSTYQRQSQRAPSQSASSETRPQMGQEPVASETRRTWQESIEPGIQEDLSTAESKQVSAAAGEGTSGAKQNEV
Homology
BLAST of Bhi04G000683 vs. ExPASy TrEMBL
Match:
A0A5A7T8K4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00190 PE=4 SV=1)
HSP 1 Score: 353.6 bits (906), Expect = 8.1e-94
Identity = 206/324 (63.58%), Postives = 221/324 (68.21%), Query Frame = 0
Query: 1 MPPCTSKRRRQNQDRTQDPTQGQSERGTNTSRVQTGAGNEQFFRSAQEV----------- 60 MPP T +RRRQNQD Q PTQG S ++T V+ GAGNEQF R+ QE+ Sbjct: 1 MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60 Query: 61 ------------GATVFEGSTDPADIEVWLNMLEKCFDVMSCPEERKVRLATFLLQKKAE 120 GATVFEGSTDPAD E WLNMLEKCFDVM+CPEERKVRLATFLLQK+AE Sbjct: 61 EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120 Query: 121 GWWKSILARRSDARMLDWQTFRGIFEDKYYPNIYCEAKRDE----------------KYT 180 GWWKSILARRSDAR LDWQTFRGIFEDKYYP+ YCEAKRDE KYT Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180 Query: 181 ELSRYADVIVASESDRCQRFERGLRFEIWTSVTTIAKWTDFSQLVETALCVEQSITEEKS 240 ELSRYADVI+ASESDRC+RFERGLRFEI T VT IAKWT+FSQLVETAL VEQSITEEKS Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240 Query: 241 TVEPSHGASTVSGFRGREQR-----------------------RQMSSGSTYQRQSQRAP 263 VE S G ST SGFRGREQR R +S GS +QRQSQR P Sbjct: 241 VVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSHGSVFQRQSQRIP 300
BLAST of Bhi04G000683 vs. ExPASy TrEMBL
Match:
A0A5A7TLH7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00900 PE=4 SV=1)
HSP 1 Score: 350.5 bits (898), Expect = 6.9e-93
Identity = 215/373 (57.64%), Postives = 238/373 (63.81%), Query Frame = 0
Query: 1 MPPCTSKRRRQNQDRTQDPTQGQSERGTNTSRVQTGAGNEQFFRSAQEV----------- 60 MPP T +RRRQNQD Q PTQG S ++T V+ GAGNEQF R+ QE+ Sbjct: 39 MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98 Query: 61 ------------GATVFEGSTDPADIEVWLNMLEKCFDVMSCPEERKVRLATFLLQKKAE 120 GATVFEGSTDPAD E WLNMLEKCFDVM+CPEERKVRLATFLLQK+AE Sbjct: 99 EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158 Query: 121 GWWKSILARRSDARMLDWQTFRGIFEDKYYPNIYCEAKRDE----------------KYT 180 GWWKSILARRSDAR LDWQTFRGIFEDKYYP+ YCEAKRDE KYT Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218 Query: 181 ELSRYADVIVASESDRCQRFERGLRFEIWTSVTTIAKWTDFSQLVETALCVEQSITEEKS 240 +LSRYADVI+A ESDRC+RFERGLRFEI T VTTIAKWT+FSQLVETAL VEQSI EEKS Sbjct: 219 KLSRYADVIIAYESDRCRRFERGLRFEIRTPVTTIAKWTNFSQLVETALRVEQSIAEEKS 278 Query: 241 TVEPSHGASTVSGFRGREQRRQMSSGSTYQRQSQRAPSQSASSETRPQMGQEPVASETRR 300 VE S G ST SGFRGR+ R +S GS +QRQSQR PSQ + R Q GQE +AS RR Sbjct: 279 AVELSRGTSTASGFRGRQASRNVSYGSVFQRQSQRIPSQPIRTTVRSQPGQESIASIVRR 338
BLAST of Bhi04G000683 vs. ExPASy TrEMBL
Match:
A0A5D3BZJ4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00240 PE=4 SV=1)
HSP 1 Score: 349.4 bits (895), Expect = 1.5e-92
Identity = 221/396 (55.81%), Postives = 241/396 (60.86%), Query Frame = 0
Query: 1 MPPCTSKRRRQNQDRTQDPTQGQSERGTNTSRVQTGAGNEQFFRSAQEV----------- 60 MPP T +RRRQNQD Q PTQG S ++T V+ GAGNEQF R+ QE+ Sbjct: 1 MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60 Query: 61 ------------GATVFEGSTDPADIEVWLNMLEKCFDVMSCPEERKVRLATFLLQKKAE 120 GATVFEGSTDPAD E WLNMLEKCFDVM+CPEERKVRLATFLLQK+AE Sbjct: 61 EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120 Query: 121 GWWKSILARRSDARMLDWQTFRGIFEDKYYPNIYCEAKRDE----------------KYT 180 GWWKSILARRSDAR LDWQTFRGIFEDKYYP+ YCEAKRDE KYT Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180 Query: 181 ELSRYADVIVASESDRCQRFERGLRFEIWTSVTTIAKWTDFSQLVETALCVEQSITEEKS 240 ELSRYADVI+ASESDRC+RFERGLRFEI T VT IAKWT+FSQLVETAL VEQSITEEKS Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240 Query: 241 TVEPSHGASTVSGFRGREQR-----------------------RQMSSGSTYQRQSQRAP 300 VE S G ST SGFRGREQR R +S GS +QRQSQR P Sbjct: 241 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 300
BLAST of Bhi04G000683 vs. ExPASy TrEMBL
Match:
A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)
HSP 1 Score: 349.0 bits (894), Expect = 2.0e-92
Identity = 221/396 (55.81%), Postives = 241/396 (60.86%), Query Frame = 0
Query: 1 MPPCTSKRRRQNQDRTQDPTQGQSERGTNTSRVQTGAGNEQFFRSAQEV----------- 60 MPP T +RRRQNQD Q PTQG S ++T V+ GAGNEQF R+ QE+ Sbjct: 1 MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60 Query: 61 ------------GATVFEGSTDPADIEVWLNMLEKCFDVMSCPEERKVRLATFLLQKKAE 120 GATVFEGSTDPAD E WLNMLEKCFDVM+CPEERKVRLATFLLQK+AE Sbjct: 61 EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120 Query: 121 GWWKSILARRSDARMLDWQTFRGIFEDKYYPNIYCEAKRDE----------------KYT 180 GWWKSILARRSDAR LDWQTFRGIFEDKYYP+ YCEAKRDE KYT Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180 Query: 181 ELSRYADVIVASESDRCQRFERGLRFEIWTSVTTIAKWTDFSQLVETALCVEQSITEEKS 240 ELSRYADVI+ASESDRC+RFERGLRFEI T VT IAKWT+FSQLVETAL VEQSITEEKS Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240 Query: 241 TVEPSHGASTVSGFRGREQR-----------------------RQMSSGSTYQRQSQRAP 300 VE S G ST SGFRGREQR R +S GS +QRQSQR P Sbjct: 241 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 300
BLAST of Bhi04G000683 vs. ExPASy TrEMBL
Match:
A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)
HSP 1 Score: 349.0 bits (894), Expect = 2.0e-92
Identity = 221/396 (55.81%), Postives = 241/396 (60.86%), Query Frame = 0
Query: 1 MPPCTSKRRRQNQDRTQDPTQGQSERGTNTSRVQTGAGNEQFFRSAQEV----------- 60 MPP T +RRRQNQD Q PTQG S ++T V+ GAGNEQF R+ QE+ Sbjct: 39 MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98 Query: 61 ------------GATVFEGSTDPADIEVWLNMLEKCFDVMSCPEERKVRLATFLLQKKAE 120 GATVFEGSTDPAD E WLNMLEKCFDVM+CPEERKVRLATFLLQK+AE Sbjct: 99 EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158 Query: 121 GWWKSILARRSDARMLDWQTFRGIFEDKYYPNIYCEAKRDE----------------KYT 180 GWWKSILARRSDAR LDWQTFRGIFEDKYYP+ YCEAKRDE KYT Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218 Query: 181 ELSRYADVIVASESDRCQRFERGLRFEIWTSVTTIAKWTDFSQLVETALCVEQSITEEKS 240 ELSRYADVI+ASESDRC+RFERGLRFEI T VT IAKWT+FSQLVETAL VEQSITEEKS Sbjct: 219 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278 Query: 241 TVEPSHGASTVSGFRGREQR-----------------------RQMSSGSTYQRQSQRAP 300 VE S G ST SGFRGREQR R +S GS +QRQSQR P Sbjct: 279 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7T8K4 8.1e-94 63.58 Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TLH7 6.9e-93 57.64 Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
A0A5D3BZJ4 1.5e-92 55.81 CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7U2V7 2.0e-92 55.81 Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5D3BS67 2.0e-92 55.81 Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
A T G C C A C C A T G T A C T A G C A A A A G A C G T A G G C A G A A T C A G G A T A G G A C G C A G G A T C C T A C C C A A G G T C A A T C T G A A A G G G G A A C C A A T A C C T C G A G A G T G C A G A C T G G A G C A G G A A A C G A G C A G T T T T T T A G A T C T G C A C A G G A G G T G G G A G C C A C A G T G T T T G A G G G T T C C A C A G A T C C A G C T G A C A T T G A G G T T T G G T T A A A T A T G C T T G A G A A A T G C T T C G A T G T G A T G A G C T G T C C T G A G G A G C G A A A A G T C A G A T T G G C C A C A T T C C T G T T G C A G A A G A A G G C A G A G G G A T G G T G G A A A T C C A T A T T A G C T A G G C G C A G T G A T G C A C G T A T G T T A G A C T G G C A G A C T T T C A G A G G C A T A T T C G A A G A C A A G T A T T A T C C T A A C A T A T A T T G T G A G G C A A A G A G A G A T G A A A A G T A T A C C G A G C T T T C A C G G T A T G C T G A T G T G A T T G T G G C A T C T G A G A G T G A C A G G T G T C A A A G G T T T G A A C G A G G G T T G C G T T T T G A G A T A T G G A C C T C G G T T A C A A C C A T T G C T A A A T G G A C G G A T T T T T C C C A G T T A G T A G A G A C T G C C C T A T G T G T G G A G C A A A G T A T A A C A G A G G A G A A G T C A A C A G T G G A G C C T A G T C A T G G G G C T T C A A C A G T T A G T G G T T T T C G A G G T C G T G A G C A A C G G A G G C A G A T G A G T T C A G G T A G T A C C T A T C A G A G G C A G A G C C A G A G A G C A C C T A G T C A G T C T G C T A G T T C A G A A A C A A G A C C G C A G A T G G G T C A G G A G C C C G T T G C T A G T G A A A C C A G G A G A A C C T G G C A G G A A T C A A T C G A G C C A G G C A T T C A A G A A G A T C T G T C C A C A G C T G A G A G C A A G C A A G T C T C A G C G G C T G C A G G A G A G G G C A C C A G C G G T G C A A A G C A G A A T G A A G T T 100 200 300 400 500 600 700 800 Score = Score = Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite mobidb-lite PTHR34482:SF4 PTHR34482
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 16..34
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 197..299
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 216..299
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..34
None No IPR available PANTHER PTHR34482:SF4 POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED coord: 65..249
None No IPR available PANTHER PTHR34482 DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE coord: 65..249
Relationships
The following mRNA feature(s) are a part of this gene: