Bhi04G000648 (gene) Wax gourd (B227) v1

Overview
NameBhi04G000648
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRibosomal protein L10 family protein
Locationchr4: 19352268 .. 19352472 (-)
RNA-Seq ExpressionBhi04G000648
SyntenyBhi04G000648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACTTAATATTCCAACCAAAATTAACATGAGTACTATTGAATTTATCACTTCTGTGAAGCTCATTAAAATGAGTGATACGGTTGGATCTTCTCCTTACAAGTTCCTATTTTTTTTTTTTTTTTTCTTTTGGCATGTTTTCTCACGGTTGCAGGACCAAGCTTTTAATAAGGAAATATCCAGCCAAATGTGGATGATTCTTTTAG

mRNA sequence

GTACTTAATATTCCAACCAAAATTAACATGAGTACTATTGAATTTATCACTTCTGTGAAGCTCATTAAAATGAGTGATACGGTTGGATCTTCTCCTTACAAGTTCCTATTTTTTTTTTTTTTTTTCTTTTGGCATGTTTTCTCACGGTTGCAGGACCAAGCTTTTAATAAGGAAATATCCAGCCAAATGTGGATGATTCTTTTAG

Coding sequence (CDS)

GTACTTAATATTCCAACCAAAATTAACATGAGTACTATTGAATTTATCACTTCTGTGAAGCTCATTAAAATGAGTGATACGGTTGGATCTTCTCCTTACAAGTTCCTATTTTTTTTTTTTTTTTTCTTTTGGCATGTTTTCTCACGGTTGCAGGACCAAGCTTTTAATAAGGAAATATCCAGCCAAATGTGGATGATTCTTTTAG

Protein sequence

VLNIPTKINMSTIEFITSVKLIKMSDTVGSSPYKFLFFFFFFFWHVFSRLQDQAFNKEISSQMWMILL
Homology
[Close]
BLAST of Bhi04G000648 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.0e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   VLNIPTKINMSTIEFITSVKLIKMSDTVGSS 32
           VLNIPTKIN  T+E IT V+LIK  D VGSS
Sbjct: 142 VLNIPTKINKGTVEIITPVELIKQGDKVGSS 172

[Close]
BLAST of Bhi04G000648 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.0e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   VLNIPTKINMSTIEFITSVKLIKMSDTVGSS 32
           VLNIPTKIN  T+E IT V+LIK  D VGSS
Sbjct: 142 VLNIPTKINKGTVEIITPVELIKQGDKVGSS 172

[Close]
BLAST of Bhi04G000648 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.0e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   VLNIPTKINMSTIEFITSVKLIKMSDTVGSS 32
           VLNIPTKIN  T+E IT V+LIK  D VGSS
Sbjct: 109 VLNIPTKINKGTVEIITPVELIKQGDKVGSS 139

[Close]
BLAST of Bhi04G000648 vs. TAIR 10
Match: AT2G40010.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 43.5 bits (101), Expect = 7.8e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   VLNIPTKINMSTIEFITSVKLIKMSDTVGSS 32
           VLNIPTKIN  T+E IT V+LIK  D VGSS
Sbjct: 143 VLNIPTKINKGTVEIITPVELIKKGDKVGSS 173

[Close]
BLAST of Bhi04G000648 vs. ExPASy Swiss-Prot
Match: Q42112 (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana OX=3702 GN=RPP0B PE=1 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   VLNIPTKINMSTIEFITSVKLIKMSDTVGSS 32
           VLNIPTKIN  T+E IT V+LIK  D VGSS
Sbjct: 142 VLNIPTKINKGTVEIITPVELIKQGDKVGSS 172

[Close]
BLAST of Bhi04G000648 vs. ExPASy Swiss-Prot
Match: P57691 (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   VLNIPTKINMSTIEFITSVKLIKMSDTVGSS 32
           VLNIPTKIN  T+E IT V+LIK  D VGSS
Sbjct: 142 VLNIPTKINKGTVEIITPVELIKQGDKVGSS 172

The following BLAST results are available for this feature:
BLAST of Bhi04G000648 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G09200.16.0e-0570.97Ribosomal protein L10 family protein [more]
AT3G11250.16.0e-0570.97Ribosomal protein L10 family protein [more]
AT3G09200.26.0e-0570.97Ribosomal protein L10 family protein [more]
AT2G40010.17.8e-0570.97Ribosomal protein L10 family protein [more]
BLAST of Bhi04G000648 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q421128.5e-0470.9760S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana OX=3702 GN=RPP0B PE=1 ... [more]
P576918.5e-0470.9760S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 ... [more]
BLAST of Bhi04G000648 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000648Bhi04M000648mRNA