Bhi04G000152 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000152
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein RADIALIS-like 4
Location	chr4: 4190027 .. 4191786 (-)
RNA-Seq Expression	Bhi04G000152
Synteny	Bhi04G000152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTCAGAGCCCACATTTTCACACCATACCTTGACTTGGTCCTCTCTTAAACGGGATCCTTGGTCTCTTTCTTACCATATTTCTTTGGCTTTCTTTGCAGTATCTTCACCTACTTATTCTCCTGTATTTCAAAACTTTCCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGAAGTTCTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCGGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGTTTCCAACGGTTCAGTGTATGCTGATGAGCAGAGGTAACGTGCTGCTTACTACTTTTAAGCGTTTTTCTTATGTCATGTGTCTCTATCCTATACTTTCATCCTGGTAAAGTCATCAAGACCTCAGTTCAAAAGTGAAAAAGACCTCCAAATTAACATGATTCTTACAAGTAGCACGAGGATTATTAGGAGAACCAACCTCCTTTGTTTCTTCAATGGTATAATATTATCCATTTTTTGAATTTAAATCCTTAAGGCTTTACTTTTAGTTTCATCCAAAAACCTCGTATCGATAGCGATAGAGATAATGACTTTGCTTTTAGTTAGACTAGACATATGTTGGCATCCCAACCATCTAAAATTTCAATTTCCTTTTCATAAGTCCGAATGACTGCGAGGCTATATAAAAGGAAATAACCGTTCTTGAATGAATTTCTATAAACAGTATGTATGCAGAGGAGAGAAAGAAAAGATTATATTATTTTATCTTCTTACAAAATAGCTTATCCGCGTATCCTTAGGTACCACGCTTTCTTTTTTCCAACTGAACTAGCTACAACTTAAGCCCAACCGCATATCTCTCATAAAGAAGTCTTTTCTACAAAGACTTCATGCTATTCCTATTCATGCATTCCCACTTCCCCTTTCTAAGAAAAAGACCACGTGAAATCTAATCTCCCATGCTTTAAATTACATGCACATGGTCCTGTATTTCTGACTTCAGACATCTACGTATTTATTTATAAATCGCTTCTTTAACATTTGGATCTACTTCAGTATTTGGCCACAAAAGTACTGATTAAAAAAACTATTAACCTAACATGGGTTGCGTTAATTAAACATCAATTCCTCCTTTAACTATGGCAGGGTCATGAAAAATACCACTGCCTCCTTGCAGAATTACTTGTCCATATATTCACATTTAAGAAACATTTAACTAATCCTTCTATCCCTTTCTTTTTAAACTATTGCAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTTTATACCAACGATATAATAAGTGCTGTCGAAGCGTTGTTGTCGATAATTTCAAGAATATAGCTTGGTGTCAGTGTTTCTCTAGTTTCCCGCTCTGTTTGTCCTTTCTAGCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTAGACTATTGTATGTTGTAACCTGTTTGTTCATGTACCCGATTTTTCTGCTTTTGTGTACTTCTATCATTAATGTTTCATTCGCATTCTAATCATTAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAGGAATATCATGTAATATATTTGCTTGCCTTTATTGTTTATCGCTACAAAAAATACTCCTATGCTATGGGCTAG

mRNA sequence

GCACTCAGAGCCCACATTTTCACACCATACCTTGACTTGGTCCTCTCTTAAACGGGATCCTTGGTCTCTTTCTTACCATATTTCTTTGGCTTTCTTTGCAGTATCTTCACCTACTTATTCTCCTGTATTTCAAAACTTTCCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGAAGTTCTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCGGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGTTTCCAACGGTTCAGTGTATGCTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTTTATACCAACGATATAATAAGTGCTGTCGAAGCGTTGTTGTCGATAATTTCAAGAATATAGCTTGGTGTCAGTGTTTCTCTAGTTTCCCGCTCTGTTTGTCCTTTCTAGCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTAGACTATTGTATGTTGTAACCTGTTTGTTCATGTACCCGATTTTTCTGCTTTTGTGTACTTCTATCATTAATGTTTCATTCGCATTCTAATCATTAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAGGAATATCATGTAATATATTTGCTTGCCTTTATTGTTTATCGCTACAAAAAATACTCCTATGCTATGGGCTAG

Coding sequence (CDS)

ATGGCATCAAGCTCTTTTAAATCTTCAGGAAGTTCTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCGGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGTTTCCAACGGTTCAGTGTATGCTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Protein sequence

MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ

Homology

[Close]

BLAST of Bhi04G000152 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
           +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPIVSNG-SVYADEQRLMKNLKL 101
           IE+G+VPLPNYK   SN  S+   + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Bhi04G000152 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPI-VSNGSVYAD--EQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK + V + S   D  + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Bhi04G000152 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-25
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPI--VSNGSVYADEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+     +NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Bhi04G000152 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-25
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 8  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
          +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPIVSN 85
          IE+G+VPLPNYK   SN
Sbjct: 64 IETGRVPLPNYKTFESN 80

[Close]

BLAST of Bhi04G000152 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-25
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPIV--SNGSVYADEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK     SN     DE++ M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of Bhi04G000152 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-26
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
           +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPIVSNG-SVYADEQRLMKNLKL 101
           IE+G+VPLPNYK   SN  S+   + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Bhi04G000152 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-25
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPI-VSNGSVYAD--EQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK + V + S   D  + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Bhi04G000152 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-24
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPI--VSNGSVYADEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+     +NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Bhi04G000152 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-24
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPIV--SNGSVYADEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK     SN     DE++ M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of Bhi04G000152 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.8e-22
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 8   SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
           S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+T EEVK+HY+IL++D+ +
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 68  IESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           IESGKVP PNY+   + G++  DE+R  +NLK++
Sbjct: 63  IESGKVPFPNYR--TTGGNMKTDEKR-FRNLKIR 93

[Close]

BLAST of Bhi04G000152 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 201.4 bits (511), Expect = 3.6e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 4.4e-46
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+V NGS+Y DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. NCBI nr
Match: XP_004152694.1 (protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_022103 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.7e-45
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPI  NGS+Y DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-44
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKPIVSNG+VY DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. NCBI nr
Match: KAA0065228.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 8.6e-42
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQR 94
          LLQDLMHIESGKVPLPNYKP+V NGS+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Bhi04G000152 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+V NGS+Y DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPI  NGS+Y DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKPIVSNG+VY DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKPIVSNG+VY DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Bhi04G000152 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQR 94
          LLQDLMHIESGKVPLPNYKP+V NGS+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

The following BLAST results are available for this feature:

BLAST of Bhi04G000152 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.2	2.2e-27	62.77	RAD-like 6	[more]
AT1G19510.1	1.4e-26	62.50	RAD-like 5	[more]
AT4G39250.1	1.6e-25	57.28	RAD-like 1	[more]
AT1G75250.1	3.5e-25	67.53	RAD-like 6	[more]
AT2G21650.1	5.9e-25	56.31	Homeodomain-like superfamily protein	[more]

BLAST of Bhi04G000152 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	3.1e-26	62.77	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	2.0e-25	62.50	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	2.2e-24	57.28	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	8.4e-24	56.31	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	7.8e-22	53.19	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Bhi04G000152 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884277.1	3.6e-48	100.00	protein RADIALIS-like 4 [Benincasa hispida]	[more]
XP_008444724.1	4.4e-46	95.05	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_004152694.1	3.7e-45	94.06	protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_0...	[more]
XP_022961874.1	3.1e-44	91.09	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]
KAA0065228.1	8.6e-42	94.62	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]

BLAST of Bhi04G000152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBS2	2.1e-46	95.05	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A0A0LPB1	1.8e-45	94.06	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]
A0A6J1K2Q1	1.5e-44	91.09	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	1.5e-44	91.09	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]
A0A5A7VC75	4.1e-42	94.62	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 3.2E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.283716
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 3.3192E-6 score: 38.7106
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 1.3E-22 score: 81.3
None	No IPR available	PANTHER	PTHR43952:SF32	PROTEIN RADIALIS-LIKE 5	coord: 14..101
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 2.2E-6 score: 27.7
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 14..101
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000152	Bhi04M000152	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity