Bhi03G001935 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001935
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein SHOOT GRAVITROPISM 6
Location	chr3: 53582740 .. 53583108 (-)
RNA-Seq Expression	Bhi03G001935
Synteny	Bhi03G001935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTACACACATTTTTTTATCTTGTTAAGAACTTGAGAAATGCTCTATTTTATTTGGTACTAAAAATGTCTGTTACTTTGTTGTTGATTGTGGTAATGGCATCACATTTCTACCTGGTTGGTTCATCTGGAGAGATGTTTGTTGAGTATCTCGTGCGCCACTTTGCCATCAAAATTGATAGAAATAGAAATGATCCTGGAAGCTCAAAGGAGTTAGCTGGGTTGAATAGTGCTTTTATTCCTTTACAGTACAAGAGAATGGAGGTTTCTGTCCTTTCAAAATATTCATTTTGGTTCTCGTACTTTCAAAATATTCATTTTGGTTATGAATTTATAACTTTAGTTAATATTGGTCCTGTACTTTGA

mRNA sequence

ATGATGTTACACACATTTTTTTATCTTGTTAAGAACTTGAGAAATGCTCTATTTTATTTGGTACTAAAAATGTCTGTTACTTTGTTGTTGATTGTGGTAATGGCATCACATTTCTACCTGGTTGGTTCATCTGGAGAGATGTTTGTTGAGTATCTCGTGCGCCACTTTGCCATCAAAATTGATAGAAATAGAAATGATCCTGGAAGCTCAAAGGAGTTAGCTGGGTTGAATAGTGCTTTTATTCCTTTACAGTACAAGAGAATGGAGGTTTCTGTCCTTTCAAAATATTCATTTTGGTTCTCGTACTTTCAAAATATTCATTTTGGTTATGAATTTATAACTTTAGTTAATATTGGTCCTGTACTTTGA

Coding sequence (CDS)

ATGATGTTACACACATTTTTTTATCTTGTTAAGAACTTGAGAAATGCTCTATTTTATTTGGTACTAAAAATGTCTGTTACTTTGTTGTTGATTGTGGTAATGGCATCACATTTCTACCTGGTTGGTTCATCTGGAGAGATGTTTGTTGAGTATCTCGTGCGCCACTTTGCCATCAAAATTGATAGAAATAGAAATGATCCTGGAAGCTCAAAGGAGTTAGCTGGGTTGAATAGTGCTTTTATTCCTTTACAGTACAAGAGAATGGAGGTTTCTGTCCTTTCAAAATATTCATTTTGGTTCTCGTACTTTCAAAATATTCATTTTGGTTATGAATTTATAACTTTAGTTAATATTGGTCCTGTACTTTGA

Protein sequence

MMLHTFFYLVKNLRNALFYLVLKMSVTLLLIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRMEVSVLSKYSFWFSYFQNIHFGYEFITLVNIGPVL

Homology

[Close]

BLAST of Bhi03G001935 vs. TAIR 10
Match: AT2G36810.1 (ARM repeat superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAI 59
           LIVVMASH YLVG SGE+FVEYLVRH AI
Sbjct: 423 LIVVMASHCYLVGPSGELFVEYLVRHSAI 451

[Close]

BLAST of Bhi03G001935 vs. ExPASy Swiss-Prot
Match: F4IP13 (Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana OX=3702 GN=SGR6 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAI 59
           LIVVMASH YLVG SGE+FVEYLVRH AI
Sbjct: 423 LIVVMASHCYLVGPSGELFVEYLVRHSAI 451

[Close]

BLAST of Bhi03G001935 vs. NCBI nr
Match: XP_023543667.1 (protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

[Close]

BLAST of Bhi03G001935 vs. NCBI nr
Match: XP_022977462.1 (protein SHOOT GRAVITROPISM 6 isoform X3 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

[Close]

BLAST of Bhi03G001935 vs. NCBI nr
Match: XP_022977463.1 (protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 260 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 319

Query: 90  VSV 93
           V +
Sbjct: 320 VKM 320

[Close]

BLAST of Bhi03G001935 vs. NCBI nr
Match: XP_022925798.1 (protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 260 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 319

Query: 90  VSV 93
           V +
Sbjct: 320 VKM 320

[Close]

BLAST of Bhi03G001935 vs. NCBI nr
Match: XP_022977461.1 (protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

[Close]

BLAST of Bhi03G001935 vs. ExPASy TrEMBL
Match: A0A6J1IJZ3 (protein SHOOT GRAVITROPISM 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

[Close]

BLAST of Bhi03G001935 vs. ExPASy TrEMBL
Match: A0A6J1IQ24 (protein SHOOT GRAVITROPISM 6 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 260 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 319

Query: 90  VSV 93
           V +
Sbjct: 320 VKM 320

[Close]

BLAST of Bhi03G001935 vs. ExPASy TrEMBL
Match: A0A6J1IMD7 (protein SHOOT GRAVITROPISM 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

[Close]

BLAST of Bhi03G001935 vs. ExPASy TrEMBL
Match: A0A6J1IIH9 (protein SHOOT GRAVITROPISM 6 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

[Close]

BLAST of Bhi03G001935 vs. ExPASy TrEMBL
Match: A0A6J1ECM0 (protein SHOOT GRAVITROPISM 6 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111433098 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 30  LIVVMASHFYLVGSSGEMFVEYLVRHFAIKIDRNRNDPGSSKELAGLNSAFIPLQYKRME 89
           LIVVMASH YLVGSSGEMFVEYLVRH AIKID  RNDPGSSKELAG+N A+IP QYKRME
Sbjct: 422 LIVVMASHCYLVGSSGEMFVEYLVRHCAIKID--RNDPGSSKELAGMNGAYIPFQYKRME 481

Query: 90  VSV 93
           V +
Sbjct: 482 VKM 482

The following BLAST results are available for this feature:

BLAST of Bhi03G001935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36810.1	2.6e-06	86.21	ARM repeat superfamily protein	[more]

BLAST of Bhi03G001935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IP13	3.6e-05	86.21	Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana OX=3702 GN=SGR6 PE=2 SV=1	[more]

BLAST of Bhi03G001935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543667.1	2.1e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022977462.1	2.1e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X3 [Cucurbita maxima]	[more]
XP_022977463.1	2.1e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita maxima]	[more]
XP_022925798.1	2.1e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita moschata]	[more]
XP_022977461.1	2.1e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita maxima]	[more]

BLAST of Bhi03G001935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJZ3	1.0e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A6J1IQ24	1.0e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A6J1IMD7	1.0e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A6J1IIH9	1.0e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A6J1ECM0	1.0e-18	84.13	protein SHOOT GRAVITROPISM 6 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001935	Bhi03M001935	mRNA