Bhi03G001787 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001787
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein Ycf2
Location	chr3: 49325854 .. 49326159 (-)
RNA-Seq Expression	Bhi03G001787
Synteny	Bhi03G001787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACGGTGATTGGGATTGGATTGATGATAAAATAGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTG

mRNA sequence

ATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACGGTGATTGGGATTGGATTGATGATAAAATAGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTG

Coding sequence (CDS)

ATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACGGTGATTGGGATTGGATTGATGATAAAATAGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTG

Protein sequence

MGFCFWWQHAMGWRSRLWGQINTFEEERLEYQSHRSHKYHTKSHQSNRFFEKYETSKHTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL

Homology

[Close]

BLAST of Bhi03G001787 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNV+G  DWIDDKIESWV+NSDSIDDKEREFL
Sbjct: 1492 HTSKEIYSLIRKRKNVSG--DWIDDKIESWVANSDSIDDKEREFL 1534

[Close]

BLAST of Bhi03G001787 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNV+G  DWIDDKIESWV+NSDSIDDKEREFL
Sbjct: 1492 HTSKEIYSLIRKRKNVSG--DWIDDKIESWVANSDSIDDKEREFL 1534

[Close]

BLAST of Bhi03G001787 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 49   FFEKYETSKHTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            F +K     HTSKEIYSLIRKRKNVNG  DWIDDKIESWV+NSDSIDDKEREFL
Sbjct: 1469 FSKKTRHLSHTSKEIYSLIRKRKNVNG--DWIDDKIESWVANSDSIDDKEREFL 1520

[Close]

BLAST of Bhi03G001787 vs. ExPASy Swiss-Prot
Match: Q0G9Q1 (Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWV+NSDSIDD+EREFL
Sbjct: 1276 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVANSDSIDDEEREFL 1318

[Close]

BLAST of Bhi03G001787 vs. ExPASy Swiss-Prot
Match: Q3C1N4 (Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWV+NSDSIDD+EREFL
Sbjct: 1475 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVANSDSIDDEEREFL 1517

[Close]

BLAST of Bhi03G001787 vs. ExPASy Swiss-Prot
Match: Q33BV3 (Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWV+NSDSIDD+EREFL
Sbjct: 1475 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVANSDSIDDEEREFL 1517

[Close]

BLAST of Bhi03G001787 vs. ExPASy Swiss-Prot
Match: Q68RU4 (Protein Ycf2 OS=Panax ginseng OX=4054 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWV+NSDSIDD+EREFL
Sbjct: 1286 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVANSDSIDDEEREFL 1328

[Close]

BLAST of Bhi03G001787 vs. NCBI nr
Match: RZC79458.1 (hypothetical protein C5167_003704, partial [Papaver somniferum])

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 39  YHTKSHQSNRFFEKYETSKHTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKE 98
           YHTKSHQSN FFEKYE S  TSKEIYSLIRKRKNVN   DWIDDKIESWV+NSDSIDD+E
Sbjct: 99  YHTKSHQSNHFFEKYEISSRTSKEIYSLIRKRKNVN--VDWIDDKIESWVANSDSIDDEE 158

Query: 99  REFL 103
           REFL
Sbjct: 159 REFL 160

[Close]

BLAST of Bhi03G001787 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1479 HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 1523

[Close]

BLAST of Bhi03G001787 vs. NCBI nr
Match: YP_009554402.1 (Ycf2 [Carya kweichowensis] >YP_009554429.1 Ycf2 [Carya kweichowensis] >AZT79174.1 Ycf2 [Carya kweichowensis] >AZT79201.1 Ycf2 [Carya kweichowensis])

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1484 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVSNSDSIDDKEREFL 1526

[Close]

BLAST of Bhi03G001787 vs. NCBI nr
Match: ARD01262.1 (hypothetical protein RF2 [Kelseya uniflora])

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1481 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVSNSDSIDDKEREFL 1523

[Close]

BLAST of Bhi03G001787 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1479 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVSNSDSIDDKEREFL 1521

[Close]

BLAST of Bhi03G001787 vs. ExPASy TrEMBL
Match: A0A4Y7L4V2 (Uncharacterized protein (Fragment) OS=Papaver somniferum OX=3469 GN=C5167_003704 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 39  YHTKSHQSNRFFEKYETSKHTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKE 98
           YHTKSHQSN FFEKYE S  TSKEIYSLIRKRKNVN   DWIDDKIESWV+NSDSIDD+E
Sbjct: 99  YHTKSHQSNHFFEKYEISSRTSKEIYSLIRKRKNVN--VDWIDDKIESWVANSDSIDDEE 158

Query: 99  REFL 103
           REFL
Sbjct: 159 REFL 160

[Close]

BLAST of Bhi03G001787 vs. ExPASy TrEMBL
Match: A0A7T3QNV9 (Uncharacterized protein OS=Benincasa hispida OX=102211 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.1e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1479 HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 1523

[Close]

BLAST of Bhi03G001787 vs. ExPASy TrEMBL
Match: A0A7S8FJL7 (Ycf2 OS=Prunus fruticosa OX=151433 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1478 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVSNSDSIDDKEREFL 1520

[Close]

BLAST of Bhi03G001787 vs. ExPASy TrEMBL
Match: A0A7H1AGU4 (Protein Ycf2 OS=Morella cerifera OX=3510 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1486 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVSNSDSIDDKEREFL 1528

[Close]

BLAST of Bhi03G001787 vs. ExPASy TrEMBL
Match: A0A0F6Q2Q4 (Protein Ycf2 OS=Prunus subhirtella var. subhirtella OX=140660 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 58   HTSKEIYSLIRKRKNVNGDWDWIDDKIESWVSNSDSIDDKEREFL 103
            HTSKEIYSLIRKRKNVNG  DWIDDKIESWVSNSDSIDDKEREFL
Sbjct: 1478 HTSKEIYSLIRKRKNVNG--DWIDDKIESWVSNSDSIDDKEREFL 1520

The following BLAST results are available for this feature:

BLAST of Bhi03G001787 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.3e-16	91.11	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.3e-16	91.11	Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of Bhi03G001787 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT6	8.5e-16	81.48	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
Q0G9Q1	2.5e-15	91.11	Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1	[more]
Q3C1N4	2.5e-15	91.11	Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1	[more]
Q33BV3	2.5e-15	91.11	Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1	[more]
Q68RU4	2.5e-15	91.11	Protein Ycf2 OS=Panax ginseng OX=4054 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Bhi03G001787 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC79458.1	2.1e-19	85.94	hypothetical protein C5167_003704, partial [Papaver somniferum]	[more]
YP_010131137.1	1.3e-16	100.00	hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei...	[more]
YP_009554402.1	2.9e-13	95.56	Ycf2 [Carya kweichowensis] >YP_009554429.1 Ycf2 [Carya kweichowensis] >AZT79174....	[more]
ARD01262.1	2.9e-13	95.56	hypothetical protein RF2 [Kelseya uniflora]	[more]
QIT04093.1	2.9e-13	95.56	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]

BLAST of Bhi03G001787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7L4V2	1.0e-19	85.94	Uncharacterized protein (Fragment) OS=Papaver somniferum OX=3469 GN=C5167_003704...	[more]
A0A7T3QNV9	6.1e-17	100.00	Uncharacterized protein OS=Benincasa hispida OX=102211 GN=ycf2 PE=4 SV=1	[more]
A0A7S8FJL7	1.4e-13	95.56	Ycf2 OS=Prunus fruticosa OX=151433 GN=ycf2 PE=4 SV=1	[more]
A0A7H1AGU4	1.4e-13	95.56	Protein Ycf2 OS=Morella cerifera OX=3510 GN=ycf2 PE=3 SV=1	[more]
A0A0F6Q2Q4	1.4e-13	95.56	Protein Ycf2 OS=Prunus subhirtella var. subhirtella OX=140660 GN=ycf2 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 32..102
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 32..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001787	Bhi03M001787	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity