Bhi03G001759 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001759
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	pentatricopeptide repeat-containing protein At5g46580, chloroplastic
Location	chr3: 48570859 .. 48571071 (-)
RNA-Seq Expression	Bhi03G001759
Synteny	Bhi03G001759

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTAAGGCAGTGGATTATGATGGGATTATGTATGTTTTGCAAGAAATGAGATGTATTGAGGAGCAGCCTAATATTGTCATGTATAATGTCGAATGGGGAAGGCTAGTAGAATCGGGGATAATGCCGAGTGAGAAGTCGTTGACTGCTCTAGTTAAGATTTATGGAAAGGCGAGATGGGATCAGGATGCTTTAGACTTGTGGGAGTAG

mRNA sequence

ATGTTTGGTAAGGCAGTGGATTATGATGGGATTATGTATGTTTTGCAAGAAATGAGATGTATTGAGGAGCAGCCTAATATTGTCATGTATAATGTCGAATGGGGAAGGCTAGTAGAATCGGGGATAATGCCGAGTGAGAAGTCGTTGACTGCTCTAGTTAAGATTTATGGAAAGGCGAGATGGGATCAGGATGCTTTAGACTTGTGGGAGTAG

Coding sequence (CDS)

ATGTTTGGTAAGGCAGTGGATTATGATGGGATTATGTATGTTTTGCAAGAAATGAGATGTATTGAGGAGCAGCCTAATATTGTCATGTATAATGTCGAATGGGGAAGGCTAGTAGAATCGGGGATAATGCCGAGTGAGAAGTCGTTGACTGCTCTAGTTAAGATTTATGGAAAGGCGAGATGGGATCAGGATGCTTTAGACTTGTGGGAGTAG

Protein sequence

MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNVEWGRLVESGIMPSEKSLTALVKIYGKARWDQDALDLWE

Homology

[Close]

BLAST of Bhi03G001759 vs. TAIR 10
Match: AT5G46580.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGI YVLQEM+ ++ +PN+V+YN                  +  ++E+G+ P
Sbjct: 300 MFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTP 359

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DAL LWE
Sbjct: 360 NEKTLTALVKIYGKARWARDALQLWE 385

[Close]

BLAST of Bhi03G001759 vs. TAIR 10
Match: AT4G16390.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.9e-07
Identity = 24/85 (28.24%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYN----------------VEWGRLVESGIMP 60
           ++G + +YDG + + +EM+ +  +PN+V+YN                + +  L+ +G  P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348

Query: 61  SEKSLTALVKIYGKARWDQDALDLW 70
           +  +  ALV+ YG+AR+  DAL ++
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIY 373

[Close]

BLAST of Bhi03G001759 vs. ExPASy Swiss-Prot
Match: Q9LS25 (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-18
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGI YVLQEM+ ++ +PN+V+YN                  +  ++E+G+ P
Sbjct: 300 MFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTP 359

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DAL LWE
Sbjct: 360 NEKTLTALVKIYGKARWARDALQLWE 385

[Close]

BLAST of Bhi03G001759 vs. ExPASy Swiss-Prot
Match: Q8GWE0 (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P67 PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-06
Identity = 24/85 (28.24%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYN----------------VEWGRLVESGIMP 60
           ++G + +YDG + + +EM+ +  +PN+V+YN                + +  L+ +G  P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348

Query: 61  SEKSLTALVKIYGKARWDQDALDLW 70
           +  +  ALV+ YG+AR+  DAL ++
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIY 373

[Close]

BLAST of Bhi03G001759 vs. NCBI nr
Match: XP_038906217.1 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN                  +  +VESGI P
Sbjct: 297 MFGEAGDYDGIMYVLQEMKSIEVQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITP 356

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 357 NEKTLTALVKIYGKARWARDALDLWE 382

[Close]

BLAST of Bhi03G001759 vs. NCBI nr
Match: XP_004148730.1 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Cucumis sativus] >KGN55781.1 hypothetical protein Csa_011464 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN                  +  +VESGI P
Sbjct: 299 MFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITP 358

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 359 NEKTLTALVKIYGKARWARDALDLWE 384

[Close]

BLAST of Bhi03G001759 vs. NCBI nr
Match: XP_023007724.1 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-19
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV------EWGR----------LVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN       + GR          ++ESGI P
Sbjct: 295 MFGEAGDYDGIMYVLQEMKSIEVQPNLVVYNTMLDAMGKAGRPGFARSLFEEMIESGITP 354

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 355 NEKTLTALVKIYGKARWARDALDLWE 380

[Close]

BLAST of Bhi03G001759 vs. NCBI nr
Match: XP_008448710.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Cucumis melo] >KAA0053056.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK11511.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN                  +  +VESGI P
Sbjct: 299 MFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITP 358

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 359 NEKTLTALVKIYGKARWARDALDLWE 384

[Close]

BLAST of Bhi03G001759 vs. NCBI nr
Match: XP_022923274.1 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV------EWGR----------LVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN       + GR          ++ESGI P
Sbjct: 294 MFGEAGDYDGIMYVLQEMKSIEVQPNLVVYNTLLDAMGKAGRPGFARSLFEEMIESGITP 353

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DAL+LWE
Sbjct: 354 NEKTLTALVKIYGKARWARDALELWE 379

[Close]

BLAST of Bhi03G001759 vs. ExPASy TrEMBL
Match: A0A5A7UFR2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001750 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN                  +  +VESGI P
Sbjct: 299 MFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITP 358

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 359 NEKTLTALVKIYGKARWARDALDLWE 384

[Close]

BLAST of Bhi03G001759 vs. ExPASy TrEMBL
Match: A0A6J1L5S8 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111500252 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-19
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV------EWGR----------LVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN       + GR          ++ESGI P
Sbjct: 295 MFGEAGDYDGIMYVLQEMKSIEVQPNLVVYNTMLDAMGKAGRPGFARSLFEEMIESGITP 354

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 355 NEKTLTALVKIYGKARWARDALDLWE 380

[Close]

BLAST of Bhi03G001759 vs. ExPASy TrEMBL
Match: A0A0A0L6K8 (Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011820 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN                  +  +VESGI P
Sbjct: 299 MFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITP 358

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 359 NEKTLTALVKIYGKARWARDALDLWE 384

[Close]

BLAST of Bhi03G001759 vs. ExPASy TrEMBL
Match: A0A1S3BKZ1 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490799 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV----------------EWGRLVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN                  +  +VESGI P
Sbjct: 299 MFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITP 358

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DALDLWE
Sbjct: 359 NEKTLTALVKIYGKARWARDALDLWE 384

[Close]

BLAST of Bhi03G001759 vs. ExPASy TrEMBL
Match: A0A6J1E5X7 (pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431017 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MFGKAVDYDGIMYVLQEMRCIEEQPNIVMYNV------EWGR----------LVESGIMP 60
           MFG+A DYDGIMYVLQEM+ IE QPN+V+YN       + GR          ++ESGI P
Sbjct: 294 MFGEAGDYDGIMYVLQEMKSIEVQPNLVVYNTLLDAMGKAGRPGFARSLFEEMIESGITP 353

Query: 61  SEKSLTALVKIYGKARWDQDALDLWE 71
           +EK+LTALVKIYGKARW +DAL+LWE
Sbjct: 354 NEKTLTALVKIYGKARWARDALELWE 379

The following BLAST results are available for this feature:

BLAST of Bhi03G001759 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46580.1	1.5e-19	51.16	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G16390.1	3.9e-07	28.24	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of Bhi03G001759 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS25	2.1e-18	51.16	Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidop...	[more]
Q8GWE0	5.5e-06	28.24	Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidop...	[more]

BLAST of Bhi03G001759 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906217.1	9.2e-19	60.47	pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Benincasa ...	[more]
XP_004148730.1	9.2e-19	60.47	pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Cucumis sa...	[more]
XP_023007724.1	9.2e-19	61.63	pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cucur...	[more]
XP_008448710.1	9.2e-19	60.47	PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic ...	[more]
XP_022923274.1	2.7e-18	60.47	pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cucur...	[more]

BLAST of Bhi03G001759 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFR2	4.5e-19	60.47	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1L5S8	4.5e-19	61.63	pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like OS=Cuc...	[more]
A0A0A0L6K8	4.5e-19	60.47	Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011820 PE=3 SV...	[more]
A0A1S3BKZ1	4.5e-19	60.47	pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Cucumis ...	[more]
A0A6J1E5X7	1.3e-18	60.47	pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like OS=Cuc...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47447:SF3	OS03G0856100 PROTEIN	coord: 1..70
None	No IPR available	PANTHER	PTHR47447	OS03G0856100 PROTEIN	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001759	Bhi03M001759	mRNA