Bhi03G000674 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G000674
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein
Location	chr3: 16963469 .. 16963798 (-)
RNA-Seq Expression	Bhi03G000674
Synteny	Bhi03G000674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTGATTTATTGAAAAGGGACCTACAACAATCACAGAACGTCCTGAATAATCGACCCGTTTGCCAAGCAGAGTCTCCGAAATCTTCCCTCTTTGCCTTCAATTACATCGGAAAACGACTTGTAAACCTTATTATGGCCATCCCCCTCATTGGTTGTCCGCGGATTCCATTATCAAGAAGTGTATCCACGGCTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTTTATGTTGGGTGTTCTCCTGTCGTGCGACCTGGTGGCTTATGTGCGACCTGTGGCCCACGCGTAA

mRNA sequence

ATGAGTAGTGATTTATTGAAAAGGGACCTACAACAATCACAGAACGTCCTGAATAATCGACCCGTTTGCCAAGCAGAGTCTCCGAAATCTTCCCTCTTTGCCTTCAATTACATCGGAAAACGACTTGTAAACCTTATTATGGCCATCCCCCTCATTGGTTGTCCGCGGATTCCATTATCAAGAAGTGTATCCACGGCTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTTTATGTTGGGTGTTCTCCTGTCGTGCGACCTGGTGGCTTATGTGCGACCTGTGGCCCACGCGTAA

Coding sequence (CDS)

ATGAGTAGTGATTTATTGAAAAGGGACCTACAACAATCACAGAACGTCCTGAATAATCGACCCGTTTGCCAAGCAGAGTCTCCGAAATCTTCCCTCTTTGCCTTCAATTACATCGGAAAACGACTTGTAAACCTTATTATGGCCATCCCCCTCATTGGTTGTCCGCGGATTCCATTATCAAGAAGTGTATCCACGGCTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTTTATGTTGGGTGTTCTCCTGTCGTGCGACCTGGTGGCTTATGTGCGACCTGTGGCCCACGCGTAA

Protein sequence

MSSDLLKRDLQQSQNVLNNRPVCQAESPKSSLFAFNYIGKRLVNLIMAIPLIGCPRIPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA

Homology

[Close]

BLAST of Bhi03G000674 vs. TAIR 10
Match: ATMG00180.1 (cytochrome C biogenesis 452 )

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-12
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 50  PLIGCPRIPLSRS---VSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLS 97
           P IG   + L RS   ++ AVGHDYYQK PMKMNISHGGVCI MLGVLLS
Sbjct: 211 PEIGLEALALPRSRQLMAMAVGHDYYQKVPMKMNISHGGVCICMLGVLLS 260

[Close]

BLAST of Bhi03G000674 vs. ExPASy Swiss-Prot
Match: P93286 (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMFC PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-11
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 50  PLIGCPRIPLSRS---VSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLS 97
           P IG   + L RS   ++ AVGHDYYQK PMKMNISHGGVCI MLGVLLS
Sbjct: 211 PEIGLEALALPRSRQLMAMAVGHDYYQKVPMKMNISHGGVCICMLGVLLS 260

[Close]

BLAST of Bhi03G000674 vs. ExPASy Swiss-Prot
Match: P38451 (Uncharacterized mitochondrial protein ymf2 OS=Marchantia polymorpha OX=3197 GN=YMF2 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-05
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 67  VGHDYYQKAPMKMNISHGGVCIFMLGVLLS 97
           VGHD ++KAP+ M ISHGGVCIF++GV+LS
Sbjct: 79  VGHD-FRKAPVNMKISHGGVCIFIMGVILS 107

[Close]

BLAST of Bhi03G000674 vs. NCBI nr
Match: XP_016515571.1 (PREDICTED: cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein [Nicotiana tabacum])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 46  LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 97

[Close]

BLAST of Bhi03G000674 vs. NCBI nr
Match: XP_016513993.1 (PREDICTED: cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein [Nicotiana tabacum])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 46  LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 97

[Close]

BLAST of Bhi03G000674 vs. NCBI nr
Match: XP_015057927.1 (uncharacterized protein LOC107004200 [Solanum pennellii])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 218 LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 269

[Close]

BLAST of Bhi03G000674 vs. NCBI nr
Match: PHT51427.1 (Cell differentiation protein RCD1 -like protein [Capsicum baccatum])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 525 LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 576

[Close]

BLAST of Bhi03G000674 vs. NCBI nr
Match: XP_009785897.1 (PREDICTED: putative cytochrome c biogenesis ccmF-like mitochondrial protein [Nicotiana sylvestris])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 218 LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 269

[Close]

BLAST of Bhi03G000674 vs. ExPASy TrEMBL
Match: A0A2G2X1R4 (Cell differentiation protein RCD1-like protein OS=Capsicum baccatum OX=33114 GN=CQW23_11174 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 525 LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 576

[Close]

BLAST of Bhi03G000674 vs. ExPASy TrEMBL
Match: A0A1S4DQ66 (cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Nicotiana tabacum OX=4097 GN=LOC107832269 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 46  LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 97

[Close]

BLAST of Bhi03G000674 vs. ExPASy TrEMBL
Match: A0A1S4DKT4 (cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Nicotiana tabacum OX=4097 GN=LOC107830841 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 46  LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 97

[Close]

BLAST of Bhi03G000674 vs. ExPASy TrEMBL
Match: A0A1U7X174 (putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Nicotiana sylvestris OX=4096 GN=LOC104234095 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCD  AYVRPVAHA
Sbjct: 218 LPTSREL-MAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDPAAYVRPVAHA 269

[Close]

BLAST of Bhi03G000674 vs. ExPASy TrEMBL
Match: A0A5C2FUU2 (Cytochrome c maturase subunit Fc OS=Spondias mombin OX=80338 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 57  IPLSRSVSTAVGHDYYQKAPMKMNISHGGVCIFMLGVLLSCDLVAYVRPVAHA 110
           +P SR +  AVGHDYYQKAPMKMNISHGGVCI MLGVLLSCDL AYVRPVAHA
Sbjct: 219 LPTSRQL-MAVGHDYYQKAPMKMNISHGGVCICMLGVLLSCDLAAYVRPVAHA 270

The following BLAST results are available for this feature:

BLAST of Bhi03G000674 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00180.1	3.6e-12	70.00	cytochrome C biogenesis 452	[more]

BLAST of Bhi03G000674 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93286	5.1e-11	70.00	Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsi...	[more]
P38451	9.4e-05	70.00	Uncharacterized mitochondrial protein ymf2 OS=Marchantia polymorpha OX=3197 GN=Y...	[more]

BLAST of Bhi03G000674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016515571.1	1.5e-15	84.91	PREDICTED: cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein [N...	[more]
XP_016513993.1	1.5e-15	84.91	PREDICTED: cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein [N...	[more]
XP_015057927.1	1.5e-15	84.91	uncharacterized protein LOC107004200 [Solanum pennellii]	[more]
PHT51427.1	1.5e-15	84.91	Cell differentiation protein RCD1 -like protein [Capsicum baccatum]	[more]
XP_009785897.1	1.5e-15	84.91	PREDICTED: putative cytochrome c biogenesis ccmF-like mitochondrial protein [Nic...	[more]

BLAST of Bhi03G000674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2X1R4	7.2e-16	84.91	Cell differentiation protein RCD1-like protein OS=Capsicum baccatum OX=33114 GN=...	[more]
A0A1S4DQ66	7.2e-16	84.91	cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Nicotiana ...	[more]
A0A1S4DKT4	7.2e-16	84.91	cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Nicotiana ...	[more]
A0A1U7X174	7.2e-16	84.91	putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Nicotiana sy...	[more]
A0A5C2FUU2	9.4e-16	84.91	Cytochrome c maturase subunit Fc OS=Spondias mombin OX=80338 GN=ccmFc PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044955	Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein	PANTHER	PTHR36010	CYTOCHROME C BIOGENESIS CCMF C-TERMINAL-LIKE MITOCHONDRIAL PROTEIN-RELATED	coord: 57..109
None	No IPR available	PANTHER	PTHR36010:SF1	CYTOCHROME C BIOGENESIS CCMF C-TERMINAL-LIKE MITOCHONDRIAL PROTEIN-RELATED	coord: 57..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000674	Bhi03M000674	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion