Bhi03G000375 (gene) Wax gourd (B227) v1

Overview
NameBhi03G000375
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionLysM domain-containing protein
Locationchr3: 9766297 .. 9766582 (-)
RNA-Seq ExpressionBhi03G000375
SyntenyBhi03G000375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTTTCCCCCAAAAATTTATTATGAATTGAAGAAAGGGGATTACAAATTATTGATTCTTCATTCTGTGAGTTTGAAAGTGCAGGTGGGGCTGTTGAGGCAGAACCAAGCTTGGAGTTGCAATGCAACAAAGTTATTGGAGTAAAGAGTGGTGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCACCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTGTCAATGCCTTTCTTAGCTGA

mRNA sequence

ATGGGTGGGGCTGTTGAGGCAGAACCAAGCTTGGAGTTGCAATGCAACAAAGTTATTGGAGTAAAGAGTGGTGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCACCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTGTCAATGCCTTTCTTAGCTGA

Coding sequence (CDS)

ATGGGTGGGGCTGTTGAGGCAGAACCAAGCTTGGAGTTGCAATGCAACAAAGTTATTGGAGTAAAGAGTGGTGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCACCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTGTCAATGCCTTTCTTAGCTGA

Protein sequence

MGGAVEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVNAFLS
Homology
BLAST of Bhi03G000375 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 2  GGAVEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCV 61
          G  V AEPSLELQCNK  GVKSGDTCF LA TFKL+TDHFNFINPNLNCSALFVGQWLCV
Sbjct: 26 GEVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCV 85

Query: 62 NAFLS 67
          NAFL+
Sbjct: 86 NAFLT 90

BLAST of Bhi03G000375 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 2  GGAVEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCV 61
          G  V  E SLELQCNK  GVKSGDTCF +AQ FKLTTDHF+FINPNLNCSALFV QWLCV
Sbjct: 26 GEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCV 85

Query: 62 NAFLS 67
          NAFL+
Sbjct: 86 NAFLT 90

BLAST of Bhi03G000375 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 5  VEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVNAF 64
          V  E SLELQCNK  GVKSGDTCF +AQ FKLTTDHF+FINPNLNCSALFV QWLCVNAF
Sbjct: 34 VVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAF 93

Query: 65 LS 67
          L+
Sbjct: 94 LT 95

BLAST of Bhi03G000375 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-18
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 3  GAVEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVN 62
          G VEA   LELQCNKV GVK+GDTCFDL Q FK+TT HF+FINPNLNC+ LF+GQWLC++
Sbjct: 35 GVVEA--GLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLD 94

Query: 63 AFL 66
          A L
Sbjct: 95 AVL 95

BLAST of Bhi03G000375 vs. NCBI nr
Match: ONI10265.1 (hypothetical protein PRUPE_4G037900 [Prunus persica])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 8  EPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVNAFLS 67
          +P + L+C  V GVKSGDTCF +AQTF L T+ F+ INPNLNC+ALFVGQW+C+N  LS
Sbjct: 30 KPPVTLKCESVYGVKSGDTCFTIAQTFSLPTEFFDSINPNLNCAALFVGQWVCLNGTLS 88

BLAST of Bhi03G000375 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 2  GGAVEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCV 61
          G  V AEPSLELQCNK  GVKSGDTCF LA TFKL+TDHFNFINPNLNCSALFVGQWLCV
Sbjct: 26 GEVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCV 85

Query: 62 NAFLS 67
          NAFL+
Sbjct: 86 NAFLT 90

BLAST of Bhi03G000375 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.9e-22
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 5  VEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVNAF 64
          V  E SLELQCNK  GVKSGDTCF +AQ FKLTTDHF+FINPNLNCSALFV QWLCVNAF
Sbjct: 34 VVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAF 93

Query: 65 LS 67
          L+
Sbjct: 94 LT 95

BLAST of Bhi03G000375 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 3  GAVEAEPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVN 62
          G VEA   LELQCNKV GVK+GDTCFDL Q FK+TT HF+FINPNLNC+ LF+GQWLC++
Sbjct: 35 GVVEA--GLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLD 94

Query: 63 AFL 66
          A L
Sbjct: 95 AVL 95

BLAST of Bhi03G000375 vs. ExPASy TrEMBL
Match: A0A251PIL2 (LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G037900 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.3e-15
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 8  EPSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVNAFLS 67
          +P + L+C  V GVKSGDTCF +AQTF L T+ F+ INPNLNC+ALFVGQW+C+N  LS
Sbjct: 30 KPPVTLKCESVYGVKSGDTCFTIAQTFSLPTEFFDSINPNLNCAALFVGQWVCLNGTLS 88

BLAST of Bhi03G000375 vs. ExPASy TrEMBL
Match: M5WNV7 (LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021979mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 9  PSLELQCNKVIGVKSGDTCFDLAQTFKLTTDHFNFINPNLNCSALFVGQWLCVNAFLS 67
          P + L+C  V GVKSGDTCF +AQTF L T+ F+ INPNLNC+ALFVGQW+C+N  LS
Sbjct: 31 PPVTLKCESVYGVKSGDTCFTIAQTFSLPTEFFDSINPNLNCAALFVGQWVCLNGTLS 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_016899229.11.1e-2486.15PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo][more]
XP_031742455.14.9e-2280.00lysM domain-containing protein ARB_00327-like [Cucumis sativus][more]
KGN49182.11.4e-2182.26hypothetical protein Csa_004378 [Cucumis sativus][more]
KGN49183.12.5e-1873.02hypothetical protein Csa_003390 [Cucumis sativus][more]
ONI10265.11.3e-1464.41hypothetical protein PRUPE_4G037900 [Prunus persica][more]
Match NameE-valueIdentityDescription
A0A1S4DTB45.1e-2586.15lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079... [more]
A0A0A0KLD26.9e-2282.26LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S... [more]
A0A0A0KHZ81.2e-1873.02LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S... [more]
A0A251PIL26.3e-1564.41LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G037900 PE=4 ... [more]
M5WNV78.2e-1565.52LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021979mg PE... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 18..62
e-value: 2.4E-5
score: 33.7
IPR018392LysM domainPFAMPF01476LysMcoord: 21..61
e-value: 6.8E-8
score: 32.4
IPR018392LysM domainPROSITEPS51782LYSMcoord: 17..61
score: 12.510001
IPR018392LysM domainCDDcd00118LysMcoord: 21..61
e-value: 1.34359E-8
score: 43.6281
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 15..61
e-value: 5.7E-16
score: 60.4
IPR036779LysM domain superfamilySUPERFAMILY54106LysM domaincoord: 16..61
NoneNo IPR availablePANTHERPTHR34997AM15coord: 8..65
NoneNo IPR availablePANTHERPTHR34997:SF13LYSM DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 8..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M000375Bhi03M000375mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane