Bhi03G000346 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G000346
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ATP synthase subunit C family protein
Location	chr3: 9003730 .. 9004074 (-)
RNA-Seq Expression	Bhi03G000346
Synteny	Bhi03G000346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGATGGATAGCTGGTCATGGTAACCAAGGCGATACCTCTTCTGAGTGGTTTACTTATACAGAAGAAAAATCGGCCAGTTCCAAGCGTAGTAGAAGTACCTCATCGGTCAATCAACCAGAACAAGCTAGGCCTTCCAATGTCGTACCCGGCCCCCAACCCATTGCTGCCCCAGTAGCTCAACAACGAAATCACCTAGATCAAACAAATGGTGAAGGTGAGAATCCATTGAATGCTGAAAGGGAGGCTAGGGCACAAGAAGAAAACGCTCGCATCTATGCCGTGATTGAGGCTATCACAAACGCCTGCGAGAATGAGGAGGCGTTCTTAGGTTGTTCGTGA

mRNA sequence

ATGTTGGGATGGATAGCTGGTCATGGTAACCAAGGCGATACCTCTTCTGAGTGGTTTACTTATACAGAAGAAAAATCGGCCAGTTCCAAGCGTAGTAGAAGTACCTCATCGGTCAATCAACCAGAACAAGCTAGGCCTTCCAATGTCGTACCCGGCCCCCAACCCATTGCTGCCCCAGTAGCTCAACAACGAAATCACCTAGATCAAACAAATGGTGAAGGTGAGAATCCATTGAATGCTGAAAGGGAGGCTAGGGCACAAGAAGAAAACGCTCGCATCTATGCCGTGATTGAGGCTATCACAAACGCCTGCGAGAATGAGGAGGCGTTCTTAGGTTGTTCGTGA

Coding sequence (CDS)

ATGTTGGGATGGATAGCTGGTCATGGTAACCAAGGCGATACCTCTTCTGAGTGGTTTACTTATACAGAAGAAAAATCGGCCAGTTCCAAGCGTAGTAGAAGTACCTCATCGGTCAATCAACCAGAACAAGCTAGGCCTTCCAATGTCGTACCCGGCCCCCAACCCATTGCTGCCCCAGTAGCTCAACAACGAAATCACCTAGATCAAACAAATGGTGAAGGTGAGAATCCATTGAATGCTGAAAGGGAGGCTAGGGCACAAGAAGAAAACGCTCGCATCTATGCCGTGATTGAGGCTATCACAAACGCCTGCGAGAATGAGGAGGCGTTCTTAGGTTGTTCGTGA

Protein sequence

MLGWIAGHGNQGDTSSEWFTYTEEKSASSKRSRSTSSVNQPEQARPSNVVPGPQPIAAPVAQQRNHLDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEAFLGCS

Homology

[Close]

BLAST of Bhi03G000346 vs. TAIR 10
Match: ATMG00040.1 (ATP synthase subunit C family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-17
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           N   + SEWFTYT +   S+   R++SSVNQP   EQA PSN +  P+P A+PVAQQ++H
Sbjct: 138 NGASSYSEWFTYTSDLEDSASSGRTSSSVNQPIQREQAGPSNAL--PEPAASPVAQQQDH 197

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  GEG      EREARAQE + RI A +E IT+ACEN EA
Sbjct: 198 LDQPFGEG-----GEREARAQEHD-RISAEVETITSACENLEA 232

[Close]

BLAST of Bhi03G000346 vs. TAIR 10
Match: ATMG01090.1 (ATP synthase 9 mitochondrial )

HSP 1 Score: 42.4 bits (98), Expect = 2.9e-04
Identity = 46/110 (41.82%), Postives = 52/110 (47.27%), Query Frame = 0


Query: 3   GWIAGHGNQGDTSSEWFTYTE---EKSASSKRSRSTSSVNQPEQARPSNVVPGPQPIAAP 62
           G I  H  Q   SSEWFTYT    E SASS   R++SSVNQP        +P  Q     
Sbjct: 107 GGIVNH--QDGASSEWFTYTSDMVEDSASS--GRTSSSVNQP--------IPEEQA---- 166

Query: 63  VAQQRNHLDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
                                EREARAQE + RI A +E IT+ACEN EA
Sbjct: 167 --------------------WEREARAQEHD-RISAEVETITSACENLEA 179

[Close]

BLAST of Bhi03G000346 vs. ExPASy Swiss-Prot
Match: P93278 (Uncharacterized ATP synthase C chain-like protein OS=Arabidopsis thaliana OX=3702 GN=AtMg00040 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-16
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           N   + SEWFTYT +   S+   R++SSVNQP   EQA PSN +  P+P A+PVAQQ++H
Sbjct: 138 NGASSYSEWFTYTSDLEDSASSGRTSSSVNQPIQREQAGPSNAL--PEPAASPVAQQQDH 197

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  GEG      EREARAQE + RI A +E IT+ACEN EA
Sbjct: 198 LDQPFGEG-----GEREARAQEHD-RISAEVETITSACENLEA 232

[Close]

BLAST of Bhi03G000346 vs. NCBI nr
Match: XP_038874948.1 (uncharacterized ATP synthase C chain-like protein [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 95/113 (84.07%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 3   GWIAGHGNQGDTSSEWFT------YTEEKSASSKRSRSTSSVNQPEQARPSNVVPGPQPI 62
           GWIAGHGNQGDTSSEWFT      YTEE+SASS RSRSTSSVNQPEQA PSN VP PQP 
Sbjct: 70  GWIAGHGNQGDTSSEWFTYTEDFSYTEEESASSGRSRSTSSVNQPEQAGPSNAVPAPQPA 129

Query: 63  AAPVAQQRNHLDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           AAP AQQRNHLDQ NGEG NPL+AEREARAQEE+ARIYA IEAITNACENEEA
Sbjct: 130 AAPAAQQRNHLDQPNGEGGNPLDAEREARAQEEDARIYAAIEAITNACENEEA 182

[Close]

BLAST of Bhi03G000346 vs. NCBI nr
Match: AGY62836.1 (orf314 [Eruca vesicaria subsp. sativa])

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-15
Identity = 60/103 (58.25%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 138 HQTEASSQWFTYTSDMLEDSDSSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 197

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I +ACENEEA
Sbjct: 198 LDQPAG--------EREARAQ-EHARISAEIERIFSACENEEA 231

[Close]

BLAST of Bhi03G000346 vs. NCBI nr
Match: XP_033146083.1 (uncharacterized ATP synthase C chain-like protein [Brassica rapa])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 60/103 (58.25%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 117 HQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 176

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 177 LDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 210

[Close]

BLAST of Bhi03G000346 vs. NCBI nr
Match: AIC83252.1 (orf287 [Brassica oleracea var. botrytis])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 60/103 (58.25%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 111 HQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 170

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 171 LDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 204

[Close]

BLAST of Bhi03G000346 vs. NCBI nr
Match: XP_022570430.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111213045 [Brassica napus])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 60/103 (58.25%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 117 HQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 176

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 177 LDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 210

[Close]

BLAST of Bhi03G000346 vs. ExPASy TrEMBL
Match: A0A088BEZ0 (Orf314 OS=Eruca vesicaria subsp. sativa OX=29727 GN=orf314 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.9e-15
Identity = 60/103 (58.25%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 138 HQTEASSQWFTYTSDMLEDSDSSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 197

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I +ACENEEA
Sbjct: 198 LDQPAG--------EREARAQ-EHARISAEIERIFSACENEEA 231

[Close]

BLAST of Bhi03G000346 vs. ExPASy TrEMBL
Match: G4XYX7 (Orf293 OS=Brassica juncea OX=3707 GN=orf293 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 60/103 (58.25%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 117 HQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 176

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 177 LDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 210

[Close]

BLAST of Bhi03G000346 vs. ExPASy TrEMBL
Match: F8K8P6 (ORF293 OS=Brassica napus OX=3708 GN=orf293 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 60/103 (58.25%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 117 HQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 176

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 177 LDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 210

[Close]

BLAST of Bhi03G000346 vs. ExPASy TrEMBL
Match: Q6YSK6 (Uncharacterized protein orf286 OS=Brassica napus OX=3708 GN=orf286 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 60/103 (58.25%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 10  NQGDTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGPQPIAAPVAQQRNH 69
           +Q + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P PQP AAP AQQ+NH
Sbjct: 110 HQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAPQPTAAPAAQQQNH 169

Query: 70  LDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           LDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 170 LDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 203

[Close]

BLAST of Bhi03G000346 vs. ExPASy TrEMBL
Match: A0A0U1YJ10 (Uncharacterized protein OS=Brassica nigra OX=3710 GN=orf288 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 63/116 (54.31%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 4   WIAGHGNQG-------DTSSEWFTYTEEKSASSKRSRSTSSVNQP---EQARPSNVVPGP 63
           W A  G+ G       + SS+WFTYT +    S  S  +SSVNQP   EQA PSN  P P
Sbjct: 99  WAAFSGSSGEVVNHQTEASSQWFTYTSDMLEDSASSGRSSSVNQPIQREQAGPSNAFPAP 158

Query: 64  QPIAAPVAQQRNHLDQTNGEGENPLNAEREARAQEENARIYAVIEAITNACENEEA 110
           QP AAP AQQ+NHLDQ  G        EREARAQ E+ARI A IE I  ACENEEA
Sbjct: 159 QPTAAPAAQQQNHLDQPAG--------EREARAQ-EHARISAEIERIMAACENEEA 205

The following BLAST results are available for this feature:

BLAST of Bhi03G000346 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00040.1	3.0e-17	55.34	ATP synthase subunit C family protein	[more]
ATMG01090.1	2.9e-04	41.82	ATP synthase 9 mitochondrial	[more]

BLAST of Bhi03G000346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93278	4.2e-16	55.34	Uncharacterized ATP synthase C chain-like protein OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Bhi03G000346 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874948.1	1.8e-40	84.07	uncharacterized ATP synthase C chain-like protein [Benincasa hispida]	[more]
AGY62836.1	5.9e-15	58.25	orf314 [Eruca vesicaria subsp. sativa]	[more]
XP_033146083.1	1.0e-14	58.25	uncharacterized ATP synthase C chain-like protein [Brassica rapa]	[more]
AIC83252.1	1.0e-14	58.25	orf287 [Brassica oleracea var. botrytis]	[more]
XP_022570430.1	1.0e-14	58.25	LOW QUALITY PROTEIN: uncharacterized protein LOC111213045 [Brassica napus]	[more]

BLAST of Bhi03G000346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A088BEZ0	2.9e-15	58.25	Orf314 OS=Eruca vesicaria subsp. sativa OX=29727 GN=orf314 PE=4 SV=1	[more]
G4XYX7	4.9e-15	58.25	Orf293 OS=Brassica juncea OX=3707 GN=orf293 PE=4 SV=1	[more]
F8K8P6	4.9e-15	58.25	ORF293 OS=Brassica napus OX=3708 GN=orf293 PE=4 SV=1	[more]
Q6YSK6	4.9e-15	58.25	Uncharacterized protein orf286 OS=Brassica napus OX=3708 GN=orf286 PE=4 SV=1	[more]
A0A0U1YJ10	4.9e-15	54.31	Uncharacterized protein OS=Brassica nigra OX=3710 GN=orf288 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000346	Bhi03M000346	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)