Bhi02G001608 (gene) Wax gourd (B227) v1

Overview


Name	Bhi02G001608
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	40S ribosomal protein S30
Location	chr2: 52098147 .. 52099245 (-)
RNA-Seq Expression	Bhi02G001608
Synteny	Bhi02G001608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGTAAAACCCTAACTCTTGATTTCCCGATCTTCGATCAGTTCTTTTTCTTGTGTTTTTCGGTTCTTTCATTTGTATGAATCTGTTTGTTAATTGTGTGTATTCGTGTTTTGATCGATTTTCAGGGAAAGTACACGGATCTCTGGCTCGTGCCGGAAAGGTGAGAGGTCAAACTCCGAAAGTAGCGAAACAGGATAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCAGGTAAACTATTGTTGTCAGCTTCTTTTGTTTTTTCTGATGCATTGCCGGTTTAGAATTGCCGATTTTGGTTTAGCATTGTATTCAATCACTAGTTCTCGGATTATGGTAATTGGTGTATTTGTTAGATTACATGTAGCTTTATATAAGAATCAATTTTTTTATTGCATTAGGAAGATTTTCATATCAGGATTCGATAAGCATCATGCTAATGTGCGATTTAAATTTGTTTGATCATTACAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAATAGCGAACTCGTGCGGGAGCTTGGCTGCTGGAGAGGCATGGTTTTATGCGTTATTATTAAGCTTTTTTTCTTCCTATTTCTCATAGATGTTTTAGTTTATTTTGAGTCTTTTGACCATGTAAAAGATATTTACTTTGACAATATATTAGAAGTAATGTGATTTGGATCTGAATTTCTGTTGTTAGTCGAACATTTTCTTTCTGAACTTTCATATTTTGTCTTGCTATGTTCAAGCTATATGTCGTTGCATACAAAGAAGGTGGAAGAACAGTCTCCACACAGATATAGCTCAGACCATGAAGCTACAAAGGTGATACAAACAGATACTTCTGCGTTTTGTGTCATATTTGCAATTATGTGGAGGCAGTTTCTCTTAATGATTTGGGTGCTGAAACAAATTAGGGATTGTGATGAGAAAAATATGAGCTTCCCCAAATCTCTGTATGAGTTTTTCTCATCAGGCCTGGGGTTATATTCTCATTAGGCCTGGGATTAGAGAAAACCTTCACCCAAAGAAACTAATTGAGGGTTTCATTTAG

mRNA sequence

ATGGGGAAAGTACACGGATCTCTGGCTCGTGCCGGAAAGGTGAGAGGTCAAACTCCGAAAGTAGCGAAACAGGATAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCAGTCGAACATTTTCTTTCTGAACTTTCATATTTTGTCTTGCTATGTTCAAGCTATATGTCGTTGCATACAAAGAAGGTGGAAGAACAGTCTCCACACAGATATAGCTCAGACCATGAAGCTACAAAGGCCTGGGGTTATATTCTCATTAGGCCTGGGATTAGAGAAAACCTTCACCCAAAGAAACTAATTGAGGGTTTCATTTAG

Coding sequence (CDS)

ATGGGGAAAGTACACGGATCTCTGGCTCGTGCCGGAAAGGTGAGAGGTCAAACTCCGAAAGTAGCGAAACAGGATAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCAGTCGAACATTTTCTTTCTGAACTTTCATATTTTGTCTTGCTATGTTCAAGCTATATGTCGTTGCATACAAAGAAGGTGGAAGAACAGTCTCCACACAGATATAGCTCAGACCATGAAGCTACAAAGGCCTGGGGTTATATTCTCATTAGGCCTGGGATTAGAGAAAACCTTCACCCAAAGAAACTAATTGAGGGTTTCATTTAG

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYFVLLCSSYMSLHTKKVEEQSPHRYSSDHEATKAWGYILIRPGIRENLHPKKLIEGFI

Homology

[Close]

BLAST of Bhi02G001608 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-19
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAV  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGF 51

[Close]

BLAST of Bhi02G001608 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-19
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAV  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGF 51

[Close]

BLAST of Bhi02G001608 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-19
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAV  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGF 51

[Close]

BLAST of Bhi02G001608 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-18
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAV  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGF 51

[Close]

BLAST of Bhi02G001608 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  F
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTF 49

[Close]

BLAST of Bhi02G001608 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  F
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTF 49

[Close]

BLAST of Bhi02G001608 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  F
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTF 49

[Close]

BLAST of Bhi02G001608 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  F
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTF 49

[Close]

BLAST of Bhi02G001608 vs. NCBI nr
Match: PIA42863.1 (hypothetical protein AQUCO_02000366v1 [Aquilegia coerulea])

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYFVL 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA + F S L   +L
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGKLFRSNLLSHIL 60

Query: 61 LCSSYMSL 69
               ++L
Sbjct: 61 FIQIELTL 68

[Close]

BLAST of Bhi02G001608 vs. NCBI nr
Match: THG01398.1 (hypothetical protein TEA_021144 [Camellia sinensis var. sinensis])

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 64/117 (54.70%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYFVLL 61
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV +     + F L+
Sbjct: 7   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVNY-----NSFGLM 66

Query: 62  CSSYMSLHTKKVEEQSPHRYSSDHEATKAWG--YILIRPGIRENL--HPKKLIEGFI 115
             + M      ++ +   R SS  EA    G  Y+L      + L  HP  L E F+
Sbjct: 67  IEAIMQF-DPDLKLKLTERLSSSREADSTTGIAYLLDTSLDLKTLAFHPLLLCEVFL 117

[Close]

BLAST of Bhi02G001608 vs. NCBI nr
Match: XP_042967962.1 (uncharacterized protein LOC122300983 isoform X1 [Carya illinoinensis])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYF 59
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA  ++L ++  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGNNWLHDVKGF 58

[Close]

BLAST of Bhi02G001608 vs. NCBI nr
Match: KAG6754108.1 (hypothetical protein POTOM_042116 [Populus tomentosa])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSEL 56
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV +  S +
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVGYLNSSI 55

[Close]

BLAST of Bhi02G001608 vs. NCBI nr
Match: CAA2953813.1 (40s ribosomal s30 [Olea europaea subsp. europaea])

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV  F
Sbjct: 48 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGF 98

[Close]

BLAST of Bhi02G001608 vs. ExPASy TrEMBL
Match: A0A2G5DH91 (40S ribosomal protein S30 OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000366v1 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYFVL 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA + F S L   +L
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGKLFRSNLLSHIL 60

Query: 61 LCSSYMSL 69
               ++L
Sbjct: 61 FIQIELTL 68

[Close]

BLAST of Bhi02G001608 vs. ExPASy TrEMBL
Match: A0A4S4DFB4 (40S ribosomal protein S30 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_021144 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 64/117 (54.70%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYFVLL 61
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV +     + F L+
Sbjct: 7   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVNY-----NSFGLM 66

Query: 62  CSSYMSLHTKKVEEQSPHRYSSDHEATKAWG--YILIRPGIRENL--HPKKLIEGFI 115
             + M      ++ +   R SS  EA    G  Y+L      + L  HP  L E F+
Sbjct: 67  IEAIMQF-DPDLKLKLTERLSSSREADSTTGIAYLLDTSLDLKTLAFHPLLLCEVFL 117

[Close]

BLAST of Bhi02G001608 vs. ExPASy TrEMBL
Match: A0A4D8Y7Z9 (40S ribosomal protein S30 OS=Salvia splendens OX=180675 GN=RP-S30e PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHFLSELSYF 59
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA   F  E+  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAASVFALEMVGF 58

[Close]

BLAST of Bhi02G001608 vs. ExPASy TrEMBL
Match: A0A368PSS0 (40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGF 51

[Close]

BLAST of Bhi02G001608 vs. ExPASy TrEMBL
Match: M5WRX6 (40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVEHF 52
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV  F
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGF 51

The following BLAST results are available for this feature:

BLAST of Bhi02G001608 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	3.2e-19	92.16	Ribosomal protein S30 family protein	[more]
AT4G29390.1	3.2e-19	92.16	Ribosomal protein S30 family protein	[more]
AT5G56670.1	3.2e-19	92.16	Ribosomal protein S30 family protein	[more]

BLAST of Bhi02G001608 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	4.5e-18	92.16	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	2.6e-13	81.63	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	2.6e-13	81.63	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	2.6e-13	81.63	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	2.6e-13	81.63	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of Bhi02G001608 vs. NCBI nr


Match Name	E-value	Identity	Description
PIA42863.1	2.4e-16	76.47	hypothetical protein AQUCO_02000366v1 [Aquilegia coerulea]	[more]
THG01398.1	2.4e-16	54.70	hypothetical protein TEA_021144 [Camellia sinensis var. sinensis]	[more]
XP_042967962.1	3.1e-16	84.48	uncharacterized protein LOC122300983 isoform X1 [Carya illinoinensis]	[more]
KAG6754108.1	3.1e-16	89.09	hypothetical protein POTOM_042116 [Populus tomentosa]	[more]
CAA2953813.1	4.1e-16	96.08	40s ribosomal s30 [Olea europaea subsp. europaea]	[more]

BLAST of Bhi02G001608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G5DH91	1.2e-16	76.47	40S ribosomal protein S30 OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000366v1 PE...	[more]
A0A4S4DFB4	1.2e-16	54.70	40S ribosomal protein S30 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_02...	[more]
A0A4D8Y7Z9	1.5e-16	86.21	40S ribosomal protein S30 OS=Salvia splendens OX=180675 GN=RP-S30e PE=3 SV=1	[more]
A0A368PSS0	2.0e-16	96.08	40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV...	[more]
M5WRX6	2.0e-16	96.08	40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 3..49 e-value: 1.5E-26 score: 92.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR12650:SF27	40S RIBOSOMAL PROTEIN S30	coord: 1..51
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001608	Bhi02M001608	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome