Bhi02G001207 (gene) Wax gourd (B227) v1

Overview


Name	Bhi02G001207
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Expansin-like A1
Location	chr2: 37571441 .. 37572521 (-)
RNA-Seq Expression	Bhi02G001207
Synteny	Bhi02G001207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTGCCGGGAGTCGAACCCGGGTCTATTGCTTGGAAGGCAATTATCCTAACCGTTGGACTACAAACGCTTGGTAAAGTAAGTAGTATTTTACTTAGTTAAAACATTCAAGTACAATGGATGTAGTGATGGGATGTCGAGATATACTATCTATAAGGGGTTGTTTGTTTTCTCTCCATTTTCTCCTTCTATGCTTCATAAGTTTAAAAATTCTTATTAATTCAATTTAATCTTTTATATTGTTTAACTTTAACAGTTGTAACTATTAATGTAAAGGTTATAATATAAATACGTAGGTAAGGTACAAGAACAAGAGATTATGCAATACAATGGAGACTAAAGTAGTTATGTCCGATCAAAATTAGGAAAACAAAACAGAATTTTTTATGCGTAGAAAAGCTTTCTCTAGCATGTCTTTAAAGGGCAAGGCTGAAGAACTTTTGAAAATGGATATTCTGGATGTCGAATACAAGAGGTAAATATATCTCATATATAACTTTTGCACTTTTTATTTATTGAGCCTAAGTTAGTTCAAAATTAGTCAACTAATCTTTTTTTTTCTTGTCTTTTTGGCAGGATACCATGTGAATACAAAAACAAAAATTTGATGGTGCAAATTGTAGAATAGAGTAGCAAACCATACTATTTGGCTATCAAATTCTTATATCAAGGTGGCCAAACTGATATACATGCAGTTAATATAGATCAAGTCACTTCAAAATTGTAAAACCTTCCTCAATAATTAATCGTAATGATTCATCAAAAATCGATTTTTAAACTAAAATACTAAATATTGTTGTTATTTGTGCATTGAATTATTTAATAGGTTCGTTTTCCAAAACGGAGTCCTATGAAAAAGCACCAAGGTGCTATTCGGGATAGCAATGACGTACCAAAAGAAGCATTACAAATATCAATGATGATAACTTCAGGATACAATAAGAAATGGATTTATGCAAATTATGTTATTCCTACTTCTTGGAGAAATGGAGAAATTTATGACATTGGAATTCAAATCAAAGATATTACTGTTGAATACTGTCCACCTTACAAATGTGGAGACAAGCCATGGAAGTGA

mRNA sequence

ATGCGTTTGCCGGGAGTCGAACCCGGGTCTATTGCTTGGAAGGCAATTATCCTAACCGTTGGACTACAAACGCTTGGTAAAGTTCGTTTTCCAAAACGGAGTCCTATGAAAAAGCACCAAGGTGCTATTCGGGATAGCAATGACGTACCAAAAGAAGCATTACAAATATCAATGATGATAACTTCAGGATACAATAAGAAATGGATTTATGCAAATTATGTTATTCCTACTTCTTGGAGAAATGGAGAAATTTATGACATTGGAATTCAAATCAAAGATATTACTGTTGAATACTGTCCACCTTACAAATGTGGAGACAAGCCATGGAAGTGA

Coding sequence (CDS)

ATGCGTTTGCCGGGAGTCGAACCCGGGTCTATTGCTTGGAAGGCAATTATCCTAACCGTTGGACTACAAACGCTTGGTAAAGTTCGTTTTCCAAAACGGAGTCCTATGAAAAAGCACCAAGGTGCTATTCGGGATAGCAATGACGTACCAAAAGAAGCATTACAAATATCAATGATGATAACTTCAGGATACAATAAGAAATGGATTTATGCAAATTATGTTATTCCTACTTCTTGGAGAAATGGAGAAATTTATGACATTGGAATTCAAATCAAAGATATTACTGTTGAATACTGTCCACCTTACAAATGTGGAGACAAGCCATGGAAGTGA

Protein sequence

MRLPGVEPGSIAWKAIILTVGLQTLGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYANYVIPTSWRNGEIYDIGIQIKDITVEYCPPYKCGDKPWK

Homology

[Close]

BLAST of Bhi02G001207 vs. TAIR 10
Match: AT3G45970.1 (expansin-like A1 )

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-11
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 31  PKRSPMKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYANYVIPTSWRNGEIYDIGIQ 90
           P    M +  GA+  ++ VP  A+Q   ++T GY+ K I++  V+P++W  G+IYD G+Q
Sbjct: 188 PNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQ 247

Query: 91  IKDITVEYCPP 102
           I DI  E C P
Sbjct: 248 ITDIAQEGCDP 258

[Close]

BLAST of Bhi02G001207 vs. ExPASy Swiss-Prot
Match: Q9LZT4 (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-10
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 31  PKRSPMKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYANYVIPTSWRNGEIYDIGIQ 90
           P    M +  GA+  ++ VP  A+Q   ++T GY+ K I++  V+P++W  G+IYD G+Q
Sbjct: 188 PNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQ 247

Query: 91  IKDITVEYCPP 102
           I DI  E C P
Sbjct: 248 ITDIAQEGCDP 258

[Close]

BLAST of Bhi02G001207 vs. ExPASy Swiss-Prot
Match: Q10S70 (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-10
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 36  MKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYAN-YVIPTSWRNGEIYDIGIQIKDI 95
           M +  G      + P   LQ+ +++T GY+ KW++A+  V+P  WR GE+YD G+QI DI
Sbjct: 206 MTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDI 265

Query: 96  TVEYCPPYKCGDKPWK 111
             E C P  C    WK
Sbjct: 266 AQEGCFP--CDTHEWK 279

[Close]

BLAST of Bhi02G001207 vs. ExPASy Swiss-Prot
Match: Q5Z980 (Expansin-like A4 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA4 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 21/67 (31.34%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 36  MKKHQGA--IRDSNDVPKEALQISMMITSGYNKKWIYAN-YVIPTSWRNGEIYDIGIQIK 95
           M +  GA  +  ++  P   L++ +++T+G   KW+ ++  V+P  WR GE+YD G+++ 
Sbjct: 227 MTRRDGAPGVWTTSRAPVGPLRLRVVVTAGSGGKWLRSDGEVLPADWRPGEVYDTGLRVT 286

Query: 96  DITVEYC 100
           D+ V  C
Sbjct: 287 DVAVRSC 293

[Close]

BLAST of Bhi02G001207 vs. NCBI nr
Match: KAA0055930.1 (expansin-like A1 [Cucumis melo var. makuwa] >TYK28135.1 expansin-like A1 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.9e-33
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYANYVIPTSWRNGEI 84
           + +V FPK SPMKKHQGAI DSN+VP+ ALQISMM++SGYN+KWIYANYV+P +WRNGEI
Sbjct: 64  IAQVGFPKWSPMKKHQGAIWDSNNVPRGALQISMMVSSGYNRKWIYANYVLPAAWRNGEI 123

Query: 85  YDIGIQIKDITVEYCPPYKCGDKPW 110
           YD G+QIKDI  EYC PY CGDKPW
Sbjct: 124 YDTGMQIKDIAAEYCRPYNCGDKPW 148

[Close]

BLAST of Bhi02G001207 vs. NCBI nr
Match: XP_022136215.1 (expansin-like A1 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGE 84
           + +V  PK  PMK++ GAI D+N+VP+ ALQ+ M++TS Y N KWI+A+YV+P  W+NGE
Sbjct: 182 VAQVGVPKWRPMKRNYGAIWDTNNVPEGALQLRMVVTSRYDNGKWIWASYVLPADWKNGE 241

Query: 85  IYDIGIQIKDITVEYCPPYKCGDKPWK 111
           IYD GI+IKDI +E CPP++CGD  WK
Sbjct: 242 IYDTGIKIKDIAIENCPPWQCGDAQWK 268

[Close]

BLAST of Bhi02G001207 vs. NCBI nr
Match: XP_038888740.1 (expansin-like A1 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-20
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGE 84
           + +V  PK  PMK++ G + D N VP+  LQ+ M+ITS Y N KWI+A  V+P  W+NGE
Sbjct: 180 IAQVGLPKWRPMKRNYGPMWDINSVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGE 239

Query: 85  IYDIGIQIKDITVEYCPPYKCGDKPWK 111
           IYD G+QI DI  EYCPP++CGD  WK
Sbjct: 240 IYDTGVQINDIAFEYCPPWQCGDGQWK 266

[Close]

BLAST of Bhi02G001207 vs. NCBI nr
Match: XP_008447889.1 (PREDICTED: expansin-like A1 [Cucumis melo] >KAA0040372.1 expansin-like A1 [Cucumis melo var. makuwa] >TYK23332.1 expansin-like A1 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGE 84
           + KV  PK  PMK++ GAI D N VP+  LQ+ M++TS Y N KWI+A  V+P+ W+NGE
Sbjct: 181 IAKVGLPKWRPMKRNYGAIWDINGVPEGGLQLRMVVTSRYDNGKWIWAGSVLPSGWKNGE 240

Query: 85  IYDIGIQIKDITVEYCPPYKC-GDKPWK 111
           IYD G+QI DI  EYCPP++C GD  WK
Sbjct: 241 IYDTGVQINDIAYEYCPPWQCGGDGQWK 268

[Close]

BLAST of Bhi02G001207 vs. NCBI nr
Match: XP_022952637.1 (expansin-like A3 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 40/77 (51.95%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 34  SPMKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYANYVIPTSWRNGEIYDIGIQIKD 93
           S MK++ GA+ ++N++P+ ALQ+ M++TSGY+ KW++A  V+P  W++G IYD G+QI D
Sbjct: 186 SHMKRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGGIYDTGVQIND 245

Query: 94  ITVEYCPPYKCGDKPWK 111
           +  E CPP++CGDKPWK
Sbjct: 246 VAKESCPPWQCGDKPWK 262

[Close]

BLAST of Bhi02G001207 vs. ExPASy TrEMBL
Match: A0A5A7ULA5 (Expansin-like A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00450 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.8e-33
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGYNKKWIYANYVIPTSWRNGEI 84
           + +V FPK SPMKKHQGAI DSN+VP+ ALQISMM++SGYN+KWIYANYV+P +WRNGEI
Sbjct: 64  IAQVGFPKWSPMKKHQGAIWDSNNVPRGALQISMMVSSGYNRKWIYANYVLPAAWRNGEI 123

Query: 85  YDIGIQIKDITVEYCPPYKCGDKPW 110
           YD G+QIKDI  EYC PY CGDKPW
Sbjct: 124 YDTGMQIKDIAAEYCRPYNCGDKPW 148

[Close]

BLAST of Bhi02G001207 vs. ExPASy TrEMBL
Match: A0A6J1C396 (expansin-like A1 OS=Momordica charantia OX=3673 GN=LOC111007965 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.0e-23
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGE 84
           + +V  PK  PMK++ GAI D+N+VP+ ALQ+ M++TS Y N KWI+A+YV+P  W+NGE
Sbjct: 182 VAQVGVPKWRPMKRNYGAIWDTNNVPEGALQLRMVVTSRYDNGKWIWASYVLPADWKNGE 241

Query: 85  IYDIGIQIKDITVEYCPPYKCGDKPWK 111
           IYD GI+IKDI +E CPP++CGD  WK
Sbjct: 242 IYDTGIKIKDIAIENCPPWQCGDAQWK 268

[Close]

BLAST of Bhi02G001207 vs. ExPASy TrEMBL
Match: A0A5A7TA87 (Expansin-like A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003930 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGE 84
           + KV  PK  PMK++ GAI D N VP+  LQ+ M++TS Y N KWI+A  V+P+ W+NGE
Sbjct: 181 IAKVGLPKWRPMKRNYGAIWDINGVPEGGLQLRMVVTSRYDNGKWIWAGSVLPSGWKNGE 240

Query: 85  IYDIGIQIKDITVEYCPPYKC-GDKPWK 111
           IYD G+QI DI  EYCPP++C GD  WK
Sbjct: 241 IYDTGVQINDIAYEYCPPWQCGGDGQWK 268

[Close]

BLAST of Bhi02G001207 vs. ExPASy TrEMBL
Match: A0A1S3BIG0 (expansin-like A1 OS=Cucumis melo OX=3656 GN=LOC103490238 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 25  LGKVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGE 84
           + KV  PK  PMK++ GAI D N VP+  LQ+ M++TS Y N KWI+A  V+P+ W+NGE
Sbjct: 181 IAKVGLPKWRPMKRNYGAIWDINGVPEGGLQLRMVVTSRYDNGKWIWAGSVLPSGWKNGE 240

Query: 85  IYDIGIQIKDITVEYCPPYKC-GDKPWK 111
           IYD G+QI DI  EYCPP++C GD  WK
Sbjct: 241 IYDTGVQINDIAYEYCPPWQCGGDGQWK 268

[Close]

BLAST of Bhi02G001207 vs. ExPASy TrEMBL
Match: A0A0A0K2Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G019840 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-20
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 27  KVRFPKRSPMKKHQGAIRDSNDVPKEALQISMMITSGY-NKKWIYANYVIPTSWRNGEIY 86
           KV  PK  PMK++ G I D N VPK  LQ+ M++TS Y N KWI+A  V+P+ W+NGEIY
Sbjct: 156 KVGLPKWRPMKRNYGGIWDINGVPKGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIY 215

Query: 87  DIGIQIKDITVEYCPPYKC-GDKPWK 111
           D G+QI DI  EYCPP++C GD  WK
Sbjct: 216 DTGVQINDIAYEYCPPWQCGGDGQWK 241

The following BLAST results are available for this feature:

BLAST of Bhi02G001207 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45970.1	6.9e-11	39.44	expansin-like A1	[more]

BLAST of Bhi02G001207 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZT4	9.8e-10	39.44	Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1	[more]
Q10S70	9.8e-10	39.47	Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1	[more]
Q5Z980	3.3e-05	31.34	Expansin-like A4 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA4 PE=2 SV=1	[more]

BLAST of Bhi02G001207 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055930.1	7.9e-33	75.29	expansin-like A1 [Cucumis melo var. makuwa] >TYK28135.1 expansin-like A1 [Cucumi...	[more]
XP_022136215.1	1.7e-22	57.47	expansin-like A1 [Momordica charantia]	[more]
XP_038888740.1	4.5e-20	54.02	expansin-like A1 [Benincasa hispida]	[more]
XP_008447889.1	5.9e-20	55.68	PREDICTED: expansin-like A1 [Cucumis melo] >KAA0040372.1 expansin-like A1 [Cucum...	[more]
XP_022952637.1	1.0e-19	51.95	expansin-like A3 [Cucurbita moschata]	[more]

BLAST of Bhi02G001207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULA5	3.8e-33	75.29	Expansin-like A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G004...	[more]
A0A6J1C396	8.0e-23	57.47	expansin-like A1 OS=Momordica charantia OX=3673 GN=LOC111007965 PE=3 SV=1	[more]
A0A5A7TA87	2.8e-20	55.68	Expansin-like A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003...	[more]
A0A1S3BIG0	2.8e-20	55.68	expansin-like A1 OS=Cucumis melo OX=3656 GN=LOC103490238 PE=3 SV=1	[more]
A0A0A0K2Q2	4.9e-20	56.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G019840 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	2.60.40.760		coord: 17..92 e-value: 5.4E-10 score: 41.0
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 33..86
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 30..105
None	No IPR available	PANTHER	PTHR31692	EXPANSIN-B3	coord: 30..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001207	Bhi02M001207	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019953	sexual reproduction
cellular_component	GO:0005576	extracellular region