Bhi02G001206 (gene) Wax gourd (B227) v1

Overview
NameBhi02G001206
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionBHLH domain-containing protein
Locationchr2: 37555463 .. 37557091 (-)
RNA-Seq ExpressionBhi02G001206
SyntenyBhi02G001206
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTGTAAGTATAACAAAATTATTCTCTCACCACAAAATTGTTTTCCCATTTATCTTCAATCACATAAAATGAAATTCGCACCCATTATTAAATTTTTAACCACCATGATTCTCTATTATTGAAATGTTTCATTTTAATTCAATCGGAAGAGCTATCCTATCAATCTCACTAATAGAGACGATCAATATTCTCAATGATATGGCATATATTAGCTCTGAATATGACAAATTATGCACGATCGAAGAAGATATCAACATCACATTGATATGGACCAACACCTACCTACTAATGAATTCATTGAATACAAATCCAAGAACCTCCTTTCAGAAAGATGACGGAGGCAGAAGCTTAGCAATAAGCTTTTGTTACTACGTAGCATTGTTCCCATCATCACAAATGTAACATCCCTAAAATGGCTTCATTAATCCATTAATTTCTTTAATTGAACAATTTCAAATCATAATCTTACTTTCTAATTTATTTTTTTTTCCATTCAGATGAACAAAGCAACCATTATCGAGGATGCTATAACTTACATCCAACAGTTGCAAAAGATGGTTAACATTCTCAAAGACCAACTTGTAGAATTAGAAGATTCATCAACAAAAGTTGTATGGCCAACACCAAGTGATAATAATATAGCACCAACACACTTAATCCAAACTTATGTTCAGGTTTGCCCTAATTATCTATTTCATAATATACGTTGAAATGTCTTGAATCTGATAAATGATATGCTCCGACGGTCAAGTATCGAAATCTAAGTTGAATTTGTAAGACGTAGATATAGCTAATAAACCACGTAAATCTGTATGGTGTCGTTTCTCTAATGTTTTACATTTTTTGTTTTCTTTATTTGTCTATTTCAAAATTAAACAGGCAGATGTGAGAGTTTCTCAAATTGAGGAACACAAATTTTAGATGAAAATACTTTTCCATAAACGGAAAGGCACATTCACTAAATTAATTGAAGCCTTGGATTCTCTTGGCTTTGAGCTAATTGATACAAGTACCACAACCATAAAAGAAGCAGTTATTATAACCACCATCCTCAATATCAATGTAAGTCCTCAAGATATTCTAAAAATTAATCTAATTTAAATTCTACATTTACCAATACTTAACTTAAGTTACTTAGTTTTGTTACCTATTTTATTTGATAACCATGTTTCAAAGAATATTCAAGTCAAACTCGAATTCAATTTGTGTATTATATATTGGATGGTGAACTTGAAAACTATAGTAAAGAAATTAAGAAAAAACGAGTAGAACTGGAATTTCGAGCTGGTTGATAACCAACAATCACTCTTTGAATGGTTAGTGGTCATTGAATCAAAGTTACTGGTCACTAGCTCTCAATTCCTAGTCTCCACCGCTGATTTCTAGTCTTAGGTCTTGGTAGTAGAAGTAGTTGTCGATCCTCGGTCCTTCGTAATGATCATCAGTTCTAGAATGAATGATAAATTTAGAGTAATTTTGGATGAAGATTTAGTGTGTTAGATTACATTATCAGTTAGCCTCTCTTAGATATATTTTTTAATATTTTATTTATCAGGGGAACTTTTGGAAGTCAACTACTCAGCAAACTGAAGAGTTGCTGCTTGAGATCGTCAATGGATTTTAA

mRNA sequence

ATGCAAATGAACAAAGCAACCATTATCGAGGATGCTATAACTTACATCCAACAGTTGCAAAAGATGGTTAACATTCTCAAAGACCAACTTGTAGAATTAGAAGATTCATCAACAAAAGTTGTATGGCCAACACCAAGTGATAATAATATAGCACCAACACACTTAATCCAAACTTATGTTCAGGGGAACTTTTGGAAGTCAACTACTCAGCAAACTGAAGAGTTGCTGCTTGAGATCGTCAATGGATTTTAA

Coding sequence (CDS)

ATGCAAATGAACAAAGCAACCATTATCGAGGATGCTATAACTTACATCCAACAGTTGCAAAAGATGGTTAACATTCTCAAAGACCAACTTGTAGAATTAGAAGATTCATCAACAAAAGTTGTATGGCCAACACCAAGTGATAATAATATAGCACCAACACACTTAATCCAAACTTATGTTCAGGGGAACTTTTGGAAGTCAACTACTCAGCAAACTGAAGAGTTGCTGCTTGAGATCGTCAATGGATTTTAA

Protein sequence

MQMNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQGNFWKSTTQQTEELLLEIVNGF
Homology
[Close]
BLAST of Bhi02G001206 vs. NCBI nr
Match: XP_022146507.1 (transcription factor DYT1, partial [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
           MNKATIIEDAITYIQQLQ+ V+ILKDQLVELE SS K +WPTP D   AP ++ ++Y+Q 
Sbjct: 62  MNKATIIEDAITYIQQLQQKVDILKDQLVELEASSEKNIWPTPRDIE-APINIKRSYIQA 121

Query: 63  N 64
           +
Sbjct: 122 D 121

[Close]
BLAST of Bhi02G001206 vs. NCBI nr
Match: XP_022994545.1 (transcription factor DYT1 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 8.4e-11
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 3  MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
          MNKATIIEDAITYI+QLQK VNILKDQLVELE S+ K  WPT   ++  PT   ++Y+Q 
Sbjct: 1  MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQA 60

Query: 63 N 64
          +
Sbjct: 61 D 61

[Close]
BLAST of Bhi02G001206 vs. NCBI nr
Match: KAG6601683.1 (Transcription factor DYT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 3  MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
          MNKATIIEDAITYI+QLQK VNILKDQLVELE S+ K  WPT   ++  PT   ++Y+Q 
Sbjct: 1  MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTIPTDSTTPTQSNKSYIQA 60

Query: 63 N 64
          +
Sbjct: 61 D 61

[Close]
BLAST of Bhi02G001206 vs. NCBI nr
Match: XP_022930020.1 (transcription factor DYT1 [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
           MNKATIIEDAITYI+QLQK VNILKDQLVELE S+ K  WPT   ++  PT   + Y+Q 
Sbjct: 68  MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTIPQDSTTPTQSNKGYIQA 127

Query: 63  N 64
           +
Sbjct: 128 D 128

[Close]
BLAST of Bhi02G001206 vs. NCBI nr
Match: TQD79727.1 (hypothetical protein C1H46_034700 [Malus baccata])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIA-------PTHL 62
           MNKATI+EDAITYIQ+LQ+ VN LKDQL E+E+SS + + P   + + A        T +
Sbjct: 60  MNKATIVEDAITYIQELQQKVNFLKDQLFEMEESSEETLQPNKEETHAAEEMKFGIQTEV 119

Query: 63  IQTYVQGN-FWKSTTQQTEE----LLLEIVNGF 84
             T + GN  W  T  + +      L+E + GF
Sbjct: 120 NVTKIDGNKLWVKTVLEKKRGGFTKLMEAMTGF 152

[Close]
BLAST of Bhi02G001206 vs. ExPASy TrEMBL
Match: A0A6J1CZR8 (transcription factor DYT1 OS=Momordica charantia OX=3673 GN=LOC111015710 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
           MNKATIIEDAITYIQQLQ+ V+ILKDQLVELE SS K +WPTP D   AP ++ ++Y+Q 
Sbjct: 62  MNKATIIEDAITYIQQLQQKVDILKDQLVELEASSEKNIWPTPRDIE-APINIKRSYIQA 121

Query: 63  N 64
           +
Sbjct: 122 D 121

[Close]
BLAST of Bhi02G001206 vs. ExPASy TrEMBL
Match: A0A6J1K1J3 (transcription factor DYT1 OS=Cucurbita maxima OX=3661 GN=LOC111490233 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 3  MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
          MNKATIIEDAITYI+QLQK VNILKDQLVELE S+ K  WPT   ++  PT   ++Y+Q 
Sbjct: 1  MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQA 60

Query: 63 N 64
          +
Sbjct: 61 D 61

[Close]
BLAST of Bhi02G001206 vs. ExPASy TrEMBL
Match: A0A6J1EVV3 (transcription factor DYT1 OS=Cucurbita moschata OX=3662 GN=LOC111436461 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.0e-11
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIAPTHLIQTYVQG 62
           MNKATIIEDAITYI+QLQK VNILKDQLVELE S+ K  WPT   ++  PT   + Y+Q 
Sbjct: 68  MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTIPQDSTTPTQSNKGYIQA 127

Query: 63  N 64
           +
Sbjct: 128 D 128

[Close]
BLAST of Bhi02G001206 vs. ExPASy TrEMBL
Match: A0A540KZS0 (BHLH domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_034700 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIA-------PTHL 62
           MNKATI+EDAITYIQ+LQ+ VN LKDQL E+E+SS + + P   + + A        T +
Sbjct: 60  MNKATIVEDAITYIQELQQKVNFLKDQLFEMEESSEETLQPNKEETHAAEEMKFGIQTEV 119

Query: 63  IQTYVQGN-FWKSTTQQTEE----LLLEIVNGF 84
             T + GN  W  T  + +      L+E + GF
Sbjct: 120 NVTKIDGNKLWVKTVLEKKRGGFTKLMEAMTGF 152

[Close]
BLAST of Bhi02G001206 vs. ExPASy TrEMBL
Match: A0A5N5FD93 (Transcription factor DYSFUNCTIONAL TAPETUM 1-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_002093 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.7e-06
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0 

Query: 3   MNKATIIEDAITYIQQLQKMVNILKDQLVELEDSSTKVVWPTPSDNNIA--------PTH 62
           MNKATI+EDAITYIQ+LQ+ V+ LKDQL E+E SS + + P   + + A         T 
Sbjct: 164 MNKATIVEDAITYIQELQQKVDFLKDQLFEMEASSAETLQPNKEETHAAEEMKKFGIQTE 223

Query: 63  LIQTYVQGN-FWKSTTQQTEE----LLLEIVNGF 84
           +  T + GN  W  T  + +      L+E + GF
Sbjct: 224 VNVTKIDGNKLWVKTVLEKKRGGFTKLMEAMTGF 257

The following BLAST results are available for this feature:
BLAST of Bhi02G001206 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi02G001206 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi02G001206 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022146507.14.9e-1167.21transcription factor DYT1, partial [Momordica charantia][more]
XP_022994545.18.4e-1163.93transcription factor DYT1 [Cucurbita maxima][more]
KAG6601683.11.1e-1063.93Transcription factor DYT1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022930020.11.9e-1063.93transcription factor DYT1 [Cucurbita moschata][more]
TQD79727.11.3e-0641.94hypothetical protein C1H46_034700 [Malus baccata][more]
BLAST of Bhi02G001206 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CZR82.4e-1167.21transcription factor DYT1 OS=Momordica charantia OX=3673 GN=LOC111015710 PE=4 SV... [more]
A0A6J1K1J34.1e-1163.93transcription factor DYT1 OS=Cucurbita maxima OX=3661 GN=LOC111490233 PE=4 SV=1[more]
A0A6J1EVV39.0e-1163.93transcription factor DYT1 OS=Cucurbita moschata OX=3662 GN=LOC111436461 PE=4 SV=... [more]
A0A540KZS06.1e-0741.94BHLH domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_034700 PE=4 S... [more]
A0A5N5FD936.7e-0640.43Transcription factor DYSFUNCTIONAL TAPETUM 1-like OS=Pyrus ussuriensis x Pyrus c... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 16..36
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 1..40
e-value: 3.2E-6
score: 28.9
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 2..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi02M001206Bhi02M001206mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity