Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGTTCATCTCGTTTCTATTACAGAAGAACCACTGAAGGGGTTCCATTTCAGTGGGAGATGCAACCGGGTACTCCCAAGAATACTCCGCCGCTCACGGATGTGGTTCCGCCGCCTATCAGCCCTCCGCCGGCGATGCTCAGCCTTAGTTTGTCGAAGCCGGGCAGGGCGGTTCAGAATAAACAACCGTTGTTTGTGTTATTTGGGCCGTGGTGGAAGCAGTTCAAGCCAAAGAAGAATCCTTGTCCGTTGGATCATAACAATGACAAGGAGCGGCTCAGATTTGACTCTTGTGGGTCCCACTGTGAATTTATGGAAGAATCTTCATGCAAAGCAAAATCTCTACAGGCGGCGGAATCTTCCGGTCACTGGCGGGTTGGATGCGGTCCATGGAGGATCAACCCGATTAAAATTGCTACAGGAAGACGAGTTTAA
mRNA sequence
ATGAGCCGTTCATCTCGTTTCTATTACAGAAGAACCACTGAAGGGGTTCCATTTCAGTGGGAGATGCAACCGGGTACTCCCAAGAATACTCCGCCGCTCACGGATGTGGTTCCGCCGCCTATCAGCCCTCCGCCGGCGATGCTCAGCCTTAGTTTGTCGAAGCCGGGCAGGGCGGTTCAGAATAAACAACCGTTGTTTGTGTTATTTGGGCCGTGGTGGAAGCAGTTCAAGCCAAAGAAGAATCCTTGTCCGTTGGATCATAACAATGACAAGGAGCGGCTCAGATTTGACTCTTGTGGGTCCCACTGTGAATTTATGGAAGAATCTTCATGCAAAGCAAAATCTCTACAGGCGGCGGAATCTTCCGGTCACTGGCGGGTTGGATGCGGTCCATGGAGGATCAACCCGATTAAAATTGCTACAGGAAGACGAGTTTAA
Coding sequence (CDS)
ATGAGCCGTTCATCTCGTTTCTATTACAGAAGAACCACTGAAGGGGTTCCATTTCAGTGGGAGATGCAACCGGGTACTCCCAAGAATACTCCGCCGCTCACGGATGTGGTTCCGCCGCCTATCAGCCCTCCGCCGGCGATGCTCAGCCTTAGTTTGTCGAAGCCGGGCAGGGCGGTTCAGAATAAACAACCGTTGTTTGTGTTATTTGGGCCGTGGTGGAAGCAGTTCAAGCCAAAGAAGAATCCTTGTCCGTTGGATCATAACAATGACAAGGAGCGGCTCAGATTTGACTCTTGTGGGTCCCACTGTGAATTTATGGAAGAATCTTCATGCAAAGCAAAATCTCTACAGGCGGCGGAATCTTCCGGTCACTGGCGGGTTGGATGCGGTCCATGGAGGATCAACCCGATTAAAATTGCTACAGGAAGACGAGTTTAA
Protein sequence
MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQNKQPLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQAAESSGHWRVGCGPWRINPIKIATGRRV
Homology
BLAST of Bhi02G000568 vs. TAIR 10
Match:
AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 1 MSRSSR--FYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRA 60
+SR+S +Y R EGVPF+WEMQPGTP NT P V PP+SPPPAMLSL L KP +
Sbjct: 12 ISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPRE--VVPPLSPPPAMLSLGLPKPSIS 71
BLAST of Bhi02G000568 vs. TAIR 10
Match:
AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )
HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 1 MSRSSR--FYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRA 60
+SR+S +Y R EGVPF+WEMQPGTP NT P V PP+SPPPAMLSL L KP +
Sbjct: 12 ISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPRE--VVPPLSPPPAMLSLGLPKPSIS 71
BLAST of Bhi02G000568 vs. NCBI nr
Match:
XP_038878338.1 (uncharacterized protein LOC120070597 [Benincasa hispida])
HSP 1 Score: 311.2 bits (796), Expect = 4.6e-81
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ
Sbjct: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
Query: 61 NKQPLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQAAE 120
NKQPLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQAAE
Sbjct: 61 NKQPLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQAAE 120
Query: 121 SSGHWRVGCGPWRINPIKIATGRRV 146
SSGHWRVGCGPWRINPIKIATGRRV
Sbjct: 121 SSGHWRVGCGPWRINPIKIATGRRV 145
BLAST of Bhi02G000568 vs. NCBI nr
Match:
XP_004146363.1 (uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_019691 [Cucumis sativus])
HSP 1 Score: 251.1 bits (640), Expect = 5.7e-63
Identity = 122/147 (82.99%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPKN PPLT+V+ PPISPPPA+LSL LSKP RAVQ
Sbjct: 25 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAVQ 84
Query: 61 NKQPLFVLFGPWWKQ--FKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQA 120
NKQPLFVLFGPW KQ KPKKNPCPLD NN ERLRFDSCGS CE M ESSCK KS A
Sbjct: 85 NKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKSAPA 144
Query: 121 AESSGHWRVGCGPWRINPIKIATGRRV 146
SSGHWR+GCGPWRINPIKI GRRV
Sbjct: 145 GGSSGHWRLGCGPWRINPIKIGMGRRV 171
BLAST of Bhi02G000568 vs. NCBI nr
Match:
KAA0058273.1 (oxysterol-binding protein-related protein 4B-like [Cucumis melo var. makuwa] >TYK11825.1 oxysterol-binding protein-related protein 4B-like [Cucumis melo var. makuwa])
HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 116/149 (77.85%), Postives = 123/149 (82.55%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPK+ PPLT+V+PPPISPPPA+LSL SKP R VQ
Sbjct: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
Query: 61 NKQPLFVLFGPWWKQ----FKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSL 120
NKQ LFVLFGPW KQ KPKKNPCPLD N + ERLRFDSCGS CE M ESSCK +S
Sbjct: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
Query: 121 QAAESSGHWRVGCGPWRINPIKIATGRRV 146
ESSG WR+GCGPWRINPIKI GRRV
Sbjct: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
BLAST of Bhi02G000568 vs. NCBI nr
Match:
KAG6589706.1 (hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 161.0 bits (406), Expect = 7.7e-36
Identity = 90/147 (61.22%), Postives = 97/147 (65.99%), Query Frame = 0
Query: 1 MSRSSR-FYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAV 60
M RSSR +YYRRT+EGVPFQWEM PGTPKNTPPL + VP I PPP ++SLSL KP V
Sbjct: 1 MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TV 60
Query: 61 QNKQPLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKS-LQA 120
QNKQP F+LF PW KQ K N PLD + K S CKAKS A
Sbjct: 61 QNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK---------------FGSPCKAKSPTPA 120
Query: 121 AESSGHWRVGCGPWRINPIKIATGRRV 146
AES GHWR GC PWRINPIKI TGRRV
Sbjct: 121 AESPGHWRFGCSPWRINPIKIGTGRRV 131
BLAST of Bhi02G000568 vs. NCBI nr
Match:
XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima])
HSP 1 Score: 158.7 bits (400), Expect = 3.8e-35
Identity = 90/150 (60.00%), Postives = 102/150 (68.00%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQNKQ 63
S +YYRRTTEGVPFQWEMQPGTPK+ PP T+ V I+PPPA LSL KP R KQ
Sbjct: 28 SRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTLLITPPPAALSLRPPKPAR-THGKQ 87
Query: 64 PLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAK--------S 123
LF+LF PW KQ K KK+ C D D R RF SCGS CEF+ +S C+ K S
Sbjct: 88 SLFLLFRPWRKQSKSKKHSCLSDEFED-GRTRFGSCGSQCEFI-QSPCEPKSSSSSAWSS 147
Query: 124 LQAAESSGHWRVGCGPWRINPIKIATGRRV 146
L AAESS H R+GCGPWRINP++IA GRRV
Sbjct: 148 LPAAESSAHRRLGCGPWRINPLRIAIGRRV 173
BLAST of Bhi02G000568 vs. ExPASy TrEMBL
Match:
A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 122/147 (82.99%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPKN PPLT+V+ PPISPPPA+LSL LSKP RAVQ
Sbjct: 25 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAVQ 84
Query: 61 NKQPLFVLFGPWWKQ--FKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQA 120
NKQPLFVLFGPW KQ KPKKNPCPLD NN ERLRFDSCGS CE M ESSCK KS A
Sbjct: 85 NKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKSAPA 144
Query: 121 AESSGHWRVGCGPWRINPIKIATGRRV 146
SSGHWR+GCGPWRINPIKI GRRV
Sbjct: 145 GGSSGHWRLGCGPWRINPIKIGMGRRV 171
BLAST of Bhi02G000568 vs. ExPASy TrEMBL
Match:
A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1)
HSP 1 Score: 240.4 bits (612), Expect = 4.8e-60
Identity = 116/149 (77.85%), Postives = 123/149 (82.55%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPK+ PPLT+V+PPPISPPPA+LSL SKP R VQ
Sbjct: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
Query: 61 NKQPLFVLFGPWWKQ----FKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSL 120
NKQ LFVLFGPW KQ KPKKNPCPLD N + ERLRFDSCGS CE M ESSCK +S
Sbjct: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
Query: 121 QAAESSGHWRVGCGPWRINPIKIATGRRV 146
ESSG WR+GCGPWRINPIKI GRRV
Sbjct: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
BLAST of Bhi02G000568 vs. ExPASy TrEMBL
Match:
A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 90/150 (60.00%), Postives = 102/150 (68.00%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQNKQ 63
S +YYRRTTEGVPFQWEMQPGTPK+ PP T+ V I+PPPA LSL KP R KQ
Sbjct: 28 SRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTLLITPPPAALSLRPPKPAR-THGKQ 87
Query: 64 PLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAK--------S 123
LF+LF PW KQ K KK+ C D D R RF SCGS CEF+ +S C+ K S
Sbjct: 88 SLFLLFRPWRKQSKSKKHSCLSDEFED-GRTRFGSCGSQCEFI-QSPCEPKSSSSSAWSS 147
Query: 124 LQAAESSGHWRVGCGPWRINPIKIATGRRV 146
L AAESS H R+GCGPWRINP++IA GRRV
Sbjct: 148 LPAAESSAHRRLGCGPWRINPLRIAIGRRV 173
BLAST of Bhi02G000568 vs. ExPASy TrEMBL
Match:
A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 5.4e-35
Identity = 88/149 (59.06%), Postives = 100/149 (67.11%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQNKQ 63
S +YYRRTTEGVPFQWEMQPGTPK+ PP T+ V I+PPPA LSL KP R KQ
Sbjct: 28 SRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTLLITPPPAALSLRPPKPAR-THGKQ 87
Query: 64 PLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFME-------ESSCKAKSL 123
LF+LF PW KQ K +K+ C D D R RF SCGS CEF++ SS SL
Sbjct: 88 SLFLLFRPWRKQSKSQKHSCLSDEFGD-GRTRFGSCGSQCEFIQSPCEPKSSSSSSWSSL 147
Query: 124 QAAESSGHWRVGCGPWRINPIKIATGRRV 146
AAESS H R+GCGPWRINP++IA GRRV
Sbjct: 148 PAAESSAHRRLGCGPWRINPLRIAIGRRV 173
BLAST of Bhi02G000568 vs. ExPASy TrEMBL
Match:
A0A540N405 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008607 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 69/172 (40.12%), Postives = 85/172 (49.42%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ--- 63
SSR YY R+TEGVPF WEMQPGTP+N PP + + PPISPPPA+LSL L KP Q
Sbjct: 40 SSRVYYCRSTEGVPFDWEMQPGTPRN-PPKEEAI-PPISPPPAVLSLGLPKPCIDQQLHT 99
Query: 64 NKQPLFVL--FGPWWKQFKPKK-NPCPLDHNNDKERL-RFDSCGSHCEFMEESSCKAKSL 123
NK P L W K+ K KK L HN ++ + D C S EFM SS S
Sbjct: 100 NKPPTSPLHRLKFWSKKSKTKKQRKNNLQHNGGLDKFDKVDFCSSDSEFMASSSSPRNSS 159
Query: 124 QAAE-----------------------SSGHWRVGCGPWRINPIKIATGRRV 146
++ SSGH+ C PW+++ + RRV
Sbjct: 160 SSSSSSFSFSKGQCSSLRSTPARDSFTSSGHF--SCSPWKLSSFLTSAARRV 207
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| AT4G25845.1 | 4.1e-11 | 58.06 | BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... | [more] |
| AT4G25850.2 | 4.1e-11 | 58.06 | OSBP(oxysterol binding protein)-related protein 4B | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_038878338.1 | 4.6e-81 | 100.00 | uncharacterized protein LOC120070597 [Benincasa hispida] | [more] |
| XP_004146363.1 | 5.7e-63 | 82.99 | uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical ... | [more] |
| KAA0058273.1 | 1.0e-59 | 77.85 | oxysterol-binding protein-related protein 4B-like [Cucumis melo var. makuwa] >TY... | [more] |
| KAG6589706.1 | 7.7e-36 | 61.22 | hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023007086.1 | 3.8e-35 | 60.00 | uncharacterized protein LOC111499680 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LUL8 | 2.7e-63 | 82.99 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1 | [more] |
| A0A5D3CJV8 | 4.8e-60 | 77.85 | Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX... | [more] |
| A0A6J1KZJ1 | 1.9e-35 | 60.00 | uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680... | [more] |
| A0A6J1EQV3 | 5.4e-35 | 59.06 | uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC1114366... | [more] |
| A0A540N405 | 2.8e-15 | 40.12 | Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008607 PE=4 SV=1 | [more] |
