Bhi02G000165 (gene) Wax gourd (B227) v1

Overview
NameBhi02G000165
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr2: 4659098 .. 4660251 (+)
RNA-Seq ExpressionBhi02G000165
SyntenyBhi02G000165
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAAAAGAAAGGCATGACTCATAATGTATGCTCATATACTGCTTTGCATTGTGGATTTGGAAGGGAACGTCTGTGGGTAGATCTTTATGGTTGTTTAGATCAAATGAGAAGTGATGAATGTAAGCCCAATGTCATTACTTACACGGTTATTATTAAGTTTCTTTGTGATGATAGAAGGATTAGTGAAGCACTTTATTTCTTGAAACTCATGGAAGGGGAGGGATGTGATCCAGACTTGGTAACTTACAATATAATTATCCATGCTCTTTGCCTTCACGATAAAGCATATGATGCTGCTGAGATTTTGCAGGTGATTCATCACAGAGGTTTCTCTCCTGATGCATATACGTAGACTGCTTTGGCTGGAGGTATAATGAAAGTAGGAAAGGCGAACATTGCTTATGAGTTATTGCACAATGTGTTCTCAAGAAACTGTACACTTGACATTGTTGTGTACAATATATACTTACATTGTTTGTGTCAAAATACTAGATCAAGAGAAGCACTTTCTCTGTTGAAAAGTATGAAAGAAGGAGGTATTGCTCCAACTACTGCGTCATATAACACAGTTTTAAGGGGCTTTTGTAGAGATGATAAACTTCAACATGCATGCTTCGAGTGGCTTGAGAGCGACCCTGATGTGGTTTCATTCAATACAGTTCTCTCTGCAGCATGTAAACTTGGGAATTTAGTTCTAATTTGCAGGGTCTTGCATTGCATTGTATGGAATCTTGTTCATGTTGTAGTCCATTTTTTCTTTCTTTTGTAATACTTTTTATATTTGCAGGTAGCTTCTTGTTTCCATGTGATTGAACCTCGAACACGGATTTCCCATGGTTTTGCATTTGTTACGATGGACAGTGTTAATGATGCTAATCGGTGTGTTAAGCACCTCAACCAGTCAATTCTAGAAGGTCGATATATAACGGTGGAGAAGGTACTATGATTATTCTGTTTGGATAGCATTCAAGAAATTTGATTGTTTGCTCTTTTTTCCCTCAAACTTGGAGGTTTTCAGGTTATATTCAGAACAAGTTTGTGTCAGCCATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAGTGATAACCTTAAACAACAGAGATTTCAAATGTGCCTGA

mRNA sequence

ATGATGAAAAAGAAAGGCATGACTCATAATGTATGCTCATATACTGCTTTGCATTGTGGATTTGGAAGGGAACGTCTGTGGGTAGATCTTTATGGTTGTTTAGATCAAATGAGAAGTGATGAATGTAAGCCCAATGTCATTACTTACACGGTTATTATTAAGTTTCTTTGTGATGATAGAAGGATTAGTGAAGCACTTTATTTCTTGAAACTCATGGAAGGGGAGGGATGTGATCCAGACTTGGTAACTTACAATATAATTATCCATGCTCTTTGCCTTCACGATAAAGCATATGATGCTGCTGAGATTTTGCAGGTAGCTTCTTGTTTCCATGTGATTGAACCTCGAACACGGATTTCCCATGGTTTTGCATTTGTTACGATGGACAGTGTTAATGATGCTAATCGGTGTGTTAAGCACCTCAACCAGTCAATTCTAGAAGGTCGATATATAACGGTGGAGAAGAACAAGTTTGTGTCAGCCATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAGTGATAACCTTAAACAACAGAGATTTCAAATGTGCCTGA

Coding sequence (CDS)

ATGATGAAAAAGAAAGGCATGACTCATAATGTATGCTCATATACTGCTTTGCATTGTGGATTTGGAAGGGAACGTCTGTGGGTAGATCTTTATGGTTGTTTAGATCAAATGAGAAGTGATGAATGTAAGCCCAATGTCATTACTTACACGGTTATTATTAAGTTTCTTTGTGATGATAGAAGGATTAGTGAAGCACTTTATTTCTTGAAACTCATGGAAGGGGAGGGATGTGATCCAGACTTGGTAACTTACAATATAATTATCCATGCTCTTTGCCTTCACGATAAAGCATATGATGCTGCTGAGATTTTGCAGGTAGCTTCTTGTTTCCATGTGATTGAACCTCGAACACGGATTTCCCATGGTTTTGCATTTGTTACGATGGACAGTGTTAATGATGCTAATCGGTGTGTTAAGCACCTCAACCAGTCAATTCTAGAAGGTCGATATATAACGGTGGAGAAGAACAAGTTTGTGTCAGCCATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAGTGATAACCTTAAACAACAGAGATTTCAAATGTGCCTGA

Protein sequence

MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDRRISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQVASCFHVIEPRTRISHGFAFVTMDSVNDANRCVKHLNQSILEGRYITVEKNKFVSAMLAAIKDDEFIHVNFSETAWSVITLNNRDFKCA
Homology
[Close]
BLAST of Bhi02G000165 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-19
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 105 QVASCFHVIEPRTRISHGFAFVTMDSVNDANRCVKHLNQSILEGRYITVEKNKFVSAMLA 164
           +VASCF V+EPRTR+S GFAFVTM S+ DA RC+K+LNQS+LEGRYITVE+        A
Sbjct: 97  KVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILHQ---A 156

Query: 165 AIKDDEFIHVNFSETAWSVITLNNRDFK 193
            I+DD+  H   +  + + +  +NR  K
Sbjct: 157 TIRDDKSTHPCSTSLSETQLDQSNRQLK 181

[Close]
BLAST of Bhi02G000165 vs. TAIR 10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-19
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 105 QVASCFHVIEPRTRISHGFAFVTMDSVNDANRCVKHLNQSILEGRYITVEKNKFVSAMLA 164
           +VASCF V+EPRTR+S GFAFVTM S+ DA RC+K+LNQS+LEGRYITVE+        A
Sbjct: 111 KVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILHQ---A 170

Query: 165 AIKDDEFIHVNFSETAWSVITLNNRDFK 193
            I+DD+  H   +  + + +  +NR  K
Sbjct: 171 TIRDDKSTHPCSTSLSETQLDQSNRQLK 195

[Close]
BLAST of Bhi02G000165 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-17
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 105 QVASCFHVIEPRTRISHGFAFVTMDSVNDANRCVKHLNQSILEGRYITVEKNK 158
           +VASCF V+EPRTR+S GFAFVTM S+ DA RC+K+LNQS+LEGRYITVE+++
Sbjct: 96  KVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSR 148

[Close]
BLAST of Bhi02G000165 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-17
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 105 QVASCFHVIEPRTRISHGFAFVTMDSVNDANRCVKHLNQSILEGRYITVEKNK 158
           +VASCF V+EPRTR+S GFAFVTM S+ DA RC+K+LNQS+LEGRYITVE+++
Sbjct: 97  KVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSR 149

[Close]
BLAST of Bhi02G000165 vs. TAIR 10
Match: AT4G35785.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-17
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 105 QVASCFHVIEPRTRISHGFAFVTMDSVNDANRCVKHLNQSILEGRYITVEKNKFVSAMLA 164
           +VASCF V+EPRTR+S GFAFVTM S+ DA RC+K+LNQS+LEGRYITVE+        A
Sbjct: 111 KVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKILHQ---A 170

Query: 165 AIKDDE 171
            I+DD+
Sbjct: 171 TIRDDK 173

[Close]
BLAST of Bhi02G000165 vs. ExPASy Swiss-Prot
Match: Q9SZ52 (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR3 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-13
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 0 

Query: 5   KGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDRRISE 64
           +G   ++ +Y++L  G G+ R    + G L +M +   KPNV T+T+ I+ L    +I+E
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276

Query: 65  ALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQ 106
           A   LK M+ EGC PD+VTY ++I ALC   K   A E+ +
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFE 317

[Close]
BLAST of Bhi02G000165 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 43/154 (27.92%), Postives = 73/154 (47.40%), Query Frame = 0 

Query: 2   MKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDRR 61
           +++KG+  NV +YTAL  G      W D    L  M   +  PNVITY+ ++     + +
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 62  ISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV---ASCFHVIEPRTR 121
           + EA    + M     DPD+VTY+ +I+ LCLHD+  +A ++  +     C   +     
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335

Query: 122 ISHGFAFVTMDSVNDANRCVKHLNQSILEGRYIT 153
           + +GF       V D  +  + ++Q  L    +T
Sbjct: 336 LINGFC--KAKRVEDGMKLFREMSQRGLVSNTVT 367

[Close]
BLAST of Bhi02G000165 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 0 

Query: 2   MKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDRR 61
           M+ KG   NV SYT L  GF +     + Y  L++M +D  KPN + +  +I   C + R
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474

Query: 62  ISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQ 106
           I EA+   + M  +GC PD+ T+N +I  LC  D+   A  +L+
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLR 518

[Close]
BLAST of Bhi02G000165 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12
Identity = 42/103 (40.78%), Postives = 54/103 (52.43%), Query Frame = 0 

Query: 2   MKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDRR 61
           M  KG   N  +YT L  G    R   +      +M+ DEC P V TYTV+IK LC   R
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338

Query: 62  ISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEIL 105
            SEAL  +K ME  G  P++ TY ++I +LC   K   A E+L
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381

[Close]
BLAST of Bhi02G000165 vs. ExPASy Swiss-Prot
Match: Q9SR00 (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-12
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 2   MKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDRR 61
           ++ KG   +V SY  L      +  W +    + +M S++C PNV+TY+++I  LC D +
Sbjct: 289 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 62  ISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQ 106
           I EA+  LKLM+ +G  PD  +Y+ +I A C   +   A E L+
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

[Close]
BLAST of Bhi02G000165 vs. NCBI nr
Match: XP_038884343.1 (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038884344.1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 8.1e-49
Identity = 97/106 (91.51%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKKKGMTHNVCSYTAL  GFGRERLWV LY CLDQMRSD CKPNVITYTVIIKFLCDD 
Sbjct: 196 MMKKKGMTHNVCSYTALLYGFGRERLWVHLYCCLDQMRSDGCKPNVITYTVIIKFLCDDG 255

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA YFLKLMEGEGCDPDLVTYNIII ALCLHDKAYDAAEILQV
Sbjct: 256 RIGEAFYFLKLMEGEGCDPDLVTYNIIIRALCLHDKAYDAAEILQV 301

[Close]
BLAST of Bhi02G000165 vs. NCBI nr
Match: XP_038884341.1 (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 [Benincasa hispida] >XP_038884342.1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 8.1e-49
Identity = 97/106 (91.51%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKKKGMTHNVCSYTAL  GFGRERLWV LY CLDQMRSD CKPNVITYTVIIKFLCDD 
Sbjct: 249 MMKKKGMTHNVCSYTALLYGFGRERLWVHLYCCLDQMRSDGCKPNVITYTVIIKFLCDDG 308

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA YFLKLMEGEGCDPDLVTYNIII ALCLHDKAYDAAEILQV
Sbjct: 309 RIGEAFYFLKLMEGEGCDPDLVTYNIIIRALCLHDKAYDAAEILQV 354

[Close]
BLAST of Bhi02G000165 vs. NCBI nr
Match: XP_022131368.1 (pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 3.9e-43
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKKKGMTHNVCSYTAL  GFGRE LWVDLY CLDQMRSD  KPNVITYTVI+KFLCDD 
Sbjct: 249 MMKKKGMTHNVCSYTALLYGFGRECLWVDLYRCLDQMRSDGFKPNVITYTVIVKFLCDDG 308

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYN+II ALCLHD+AYD AE+LQV
Sbjct: 309 RIGEAFEILKFMEREGCDPDLVTYNVIIRALCLHDRAYDVAELLQV 354

[Close]
BLAST of Bhi02G000165 vs. NCBI nr
Match: XP_023522454.1 (pentatricopeptide repeat-containing protein At1g63330-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-38
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKK G+ HNVCSYTAL  GFGRE LWVDLY  LDQMRSD CKPNV+TYTVIIKFLCDD 
Sbjct: 215 MMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDQMRSDGCKPNVVTYTVIIKFLCDDG 274

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYNIII ALCL+D+A D  E+LQ+
Sbjct: 275 RIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRACDVVELLQL 320

[Close]
BLAST of Bhi02G000165 vs. NCBI nr
Match: XP_023522455.1 (pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023522456.1 pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-38
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKK G+ HNVCSYTAL  GFGRE LWVDLY  LDQMRSD CKPNV+TYTVIIKFLCDD 
Sbjct: 196 MMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDQMRSDGCKPNVVTYTVIIKFLCDDG 255

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYNIII ALCL+D+A D  E+LQ+
Sbjct: 256 RIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRACDVVELLQL 301

[Close]
BLAST of Bhi02G000165 vs. ExPASy TrEMBL
Match: A0A6J1BT58 (pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charantia OX=3673 GN=LOC111004610 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKKKGMTHNVCSYTAL  GFGRE LWVDLY CLDQMRSD  KPNVITYTVI+KFLCDD 
Sbjct: 249 MMKKKGMTHNVCSYTALLYGFGRECLWVDLYRCLDQMRSDGFKPNVITYTVIVKFLCDDG 308

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYN+II ALCLHD+AYD AE+LQV
Sbjct: 309 RIGEAFEILKFMEREGCDPDLVTYNVIIRALCLHDRAYDVAELLQV 354

[Close]
BLAST of Bhi02G000165 vs. ExPASy TrEMBL
Match: A0A6J1KPX6 (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496160 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 8.2e-39
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKK G+ HNVCSYTAL  GFGRE LWVDLY  LDQMRSD CKPNV+TYTVIIKFLCDD 
Sbjct: 249 MMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDQMRSDGCKPNVVTYTVIIKFLCDDG 308

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYNIII ALCL+D+A D  E+LQ+
Sbjct: 309 RIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRACDVLELLQL 354

[Close]
BLAST of Bhi02G000165 vs. ExPASy TrEMBL
Match: A0A6J1KNF9 (pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496160 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 8.2e-39
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKK G+ HNVCSYTAL  GFGRE LWVDLY  LDQMRSD CKPNV+TYTVIIKFLCDD 
Sbjct: 215 MMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDQMRSDGCKPNVVTYTVIIKFLCDDG 274

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYNIII ALCL+D+A D  E+LQ+
Sbjct: 275 RIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRACDVLELLQL 320

[Close]
BLAST of Bhi02G000165 vs. ExPASy TrEMBL
Match: A0A6J1GI38 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454134 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 79/106 (74.53%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKK G+ HNVCSYTAL  GFGRE LWVDLY  L QMRSD CKPNV+TYTVIIKFLCDD 
Sbjct: 249 MMKKNGIPHNVCSYTALLYGFGRECLWVDLYSFLHQMRSDGCKPNVVTYTVIIKFLCDDG 308

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYNIII ALCL+D+  D  E+LQ+
Sbjct: 309 RIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRTCDVVELLQL 354

[Close]
BLAST of Bhi02G000165 vs. ExPASy TrEMBL
Match: A0A6J1GI66 (pentatricopeptide repeat-containing protein At1g09900-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454134 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 79/106 (74.53%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 1   MMKKKGMTHNVCSYTALHCGFGRERLWVDLYGCLDQMRSDECKPNVITYTVIIKFLCDDR 60
           MMKK G+ HNVCSYTAL  GFGRE LWVDLY  L QMRSD CKPNV+TYTVIIKFLCDD 
Sbjct: 215 MMKKNGIPHNVCSYTALLYGFGRECLWVDLYSFLHQMRSDGCKPNVVTYTVIIKFLCDDG 274

Query: 61  RISEALYFLKLMEGEGCDPDLVTYNIIIHALCLHDKAYDAAEILQV 107
           RI EA   LK ME EGCDPDLVTYNIII ALCL+D+  D  E+LQ+
Sbjct: 275 RIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRTCDVVELLQL 320

The following BLAST results are available for this feature:
BLAST of Bhi02G000165 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35785.37.2e-1952.27RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G35785.57.2e-1952.27RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G35785.11.8e-1771.70RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G35785.21.8e-1771.70RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G35785.41.8e-1763.64RNA-binding (RRM/RBD/RNP motifs) family protein [more]
BLAST of Bhi02G000165 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SZ527.5e-1337.62Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop... [more]
Q3ECK21.7e-1227.92Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop... [more]
Q9FMF62.8e-1235.58Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
Q9LSL92.8e-1240.78Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX... [more]
Q9SR006.3e-1234.62Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop... [more]
BLAST of Bhi02G000165 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884343.18.1e-4991.51pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor... [more]
XP_038884341.18.1e-4991.51pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor... [more]
XP_022131368.13.9e-4382.08pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia][more]
XP_023522454.11.3e-3876.42pentatricopeptide repeat-containing protein At1g63330-like isoform X2 [Cucurbita... [more]
XP_023522455.11.3e-3876.42pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like isofor... [more]
BLAST of Bhi02G000165 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BT581.9e-4382.08pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charanti... [more]
A0A6J1KPX68.2e-3976.42pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor... [more]
A0A6J1KNF98.2e-3976.42pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isofor... [more]
A0A6J1GI381.6e-3774.53putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial is... [more]
A0A6J1GI661.6e-3774.53pentatricopeptide repeat-containing protein At1g09900-like isoform X2 OS=Cucurbi... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..105
e-value: 4.8E-25
score: 90.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 106..159
e-value: 1.7E-9
score: 39.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 112..151
e-value: 5.0E-6
score: 26.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 44..92
e-value: 5.3E-14
score: 52.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 13..42
e-value: 0.23
score: 11.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 47..80
e-value: 8.8E-8
score: 29.9
coord: 13..46
e-value: 9.0E-4
score: 17.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 10.731171
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 1..106
NoneNo IPR availablePANTHERPTHR47932:SF43OS04G0475800 PROTEINcoord: 1..106
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 106..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi02M000165Bhi02M000165mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding