Bhi01G001939 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G001939
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
Location	chr1: 61675919 .. 61676227 (-)
RNA-Seq Expression	Bhi01G001939
Synteny	Bhi01G001939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGCAGATGGCTGTTAAGTTGGGGTGTGAAAACCTTTGGGTGGAGACCGACACTGAGGTTGGTTGTAAAGAAGACCCAATCAATGAACTTCACTTTATCCCCTTTTGGAACCATTTATGTCAAGACTGCTGCTTTGATGTCCAACTTAAATGTTAAGAGCTTTACTTTTGTTCCTAGGAAGTGTGATAGAGTGGCCCATCAATTGGCCCAACATGCTATTTCTTCTTGTTCCTCTTGTATGTGGTGTATTGATCTTCCTGATTGGCTCTCCCAAATTGTGGAGATTGATAAGGGAGGAACTTAA

mRNA sequence

ATGGCTTGCAGATGGCTGTTAAGTTGGGGTGTGAAAACCTTTGGGTGGAGACCGACACTGAGGTTGGTTGTAAAGAAGACCCAATCAATGAACTTCACTTTATCCCCTTTTGGAACCATTTATGTCAAGACTGCTGCTTTGATGTCCAACTTAAATGTTAAGAGCTTTACTTTTGTTCCTAGGAAGTGTGATAGAGTGGCCCATCAATTGGCCCAACATGCTATTTCTTCTTGTTCCTCTTGTATGTGGTGTATTGATCTTCCTGATTGGCTCTCCCAAATTGTGGAGATTGATAAGGGAGGAACTTAA

Coding sequence (CDS)

ATGGCTTGCAGATGGCTGTTAAGTTGGGGTGTGAAAACCTTTGGGTGGAGACCGACACTGAGGTTGGTTGTAAAGAAGACCCAATCAATGAACTTCACTTTATCCCCTTTTGGAACCATTTATGTCAAGACTGCTGCTTTGATGTCCAACTTAAATGTTAAGAGCTTTACTTTTGTTCCTAGGAAGTGTGATAGAGTGGCCCATCAATTGGCCCAACATGCTATTTCTTCTTGTTCCTCTTGTATGTGGTGTATTGATCTTCCTGATTGGCTCTCCCAAATTGTGGAGATTGATAAGGGAGGAACTTAA

Protein sequence

MACRWLLSWGVKTFGWRPTLRLVVKKTQSMNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSCSSCMWCIDLPDWLSQIVEIDKGGT

Homology

[Close]

BLAST of Bhi01G001939 vs. NCBI nr
Match: KAA0039613.1 (G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-05
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 30  MNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSC 79
           MN T+ PFG  Y +   L +  N+   +FV R+C+RVAH LAQHA+SSC
Sbjct: 86  MNLTIFPFGVFYAECIVLFALSNIVGLSFVSRECNRVAHSLAQHALSSC 134

[Close]

BLAST of Bhi01G001939 vs. NCBI nr
Match: TYK01692.1 (hypothetical protein E5676_scaffold775G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-05
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 30  MNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSC 79
           MN T+ PFG  Y +   L +  N+   +FV R+C+RVAH LAQHA+SSC
Sbjct: 53  MNLTIFPFGVFYAECIVLFALSNIVGLSFVSRECNRVAHSLAQHALSSC 101

[Close]

BLAST of Bhi01G001939 vs. NCBI nr
Match: KAE8649323.1 (hypothetical protein Csa_014502 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-04
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 48 MSNLNVKSFTFVPRKCDRVAHQLAQHAISSCSSCMWCIDLPDWLSQIVEID 99
          M+ L +    F  R C+R AH LA HA+SS +SC W     +WL+QIV  D
Sbjct: 1  MTKLRILGLNFASRNCNRAAHNLAAHALSSGTSCWWITSFLNWLNQIVGTD 51

[Close]

BLAST of Bhi01G001939 vs. ExPASy TrEMBL
Match: A0A5A7T9F2 (G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00930 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 30  MNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSC 79
           MN T+ PFG  Y +   L +  N+   +FV R+C+RVAH LAQHA+SSC
Sbjct: 86  MNLTIFPFGVFYAECIVLFALSNIVGLSFVSRECNRVAHSLAQHALSSC 134

[Close]

BLAST of Bhi01G001939 vs. ExPASy TrEMBL
Match: A0A5D3BSC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00140 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 30  MNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSC 79
           MN T+ PFG  Y +   L +  N+   +FV R+C+RVAH LAQHA+SSC
Sbjct: 53  MNLTIFPFGVFYAECIVLFALSNIVGLSFVSRECNRVAHSLAQHALSSC 101

[Close]

BLAST of Bhi01G001939 vs. ExPASy TrEMBL
Match: A0A6P5TK21 (uncharacterized protein LOC110768446 OS=Prunus avium OX=42229 GN=LOC110768446 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 24/74 (32.43%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 22  LVVKKTQSMNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSCSSC 81
           L V+K  S +   SP G ++    AL+S+ +  +   VP+ C+RVA +L+  A+S    C
Sbjct: 160 LAVRKASSFD---SPLGVLFADCGALLSHFHSATVAHVPKTCNRVASRLSHFAVSVSQDC 219

Query: 82  MWCIDLPDWLSQIV 96
           +W ++ PD L  ++
Sbjct: 220 LWLLEPPDLLQDLL 230

[Close]

BLAST of Bhi01G001939 vs. ExPASy TrEMBL
Match: A0A6P5S2Z6 (uncharacterized protein LOC110753401 OS=Prunus avium OX=42229 GN=LOC110753401 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.7e-04
Identity = 24/74 (32.43%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 22  LVVKKTQSMNFTLSPFGTIYVKTAALMSNLNVKSFTFVPRKCDRVAHQLAQHAISSCSSC 81
           L V+K  S +   SP G ++    AL+S+ +  +   VP+ C+RVA +L+  A+S    C
Sbjct: 160 LAVRKASSFD---SPLGVLFADCGALLSHFHSATVAHVPKTCNRVASRLSHFALSVSQDC 219

Query: 82  MWCIDLPDWLSQIV 96
           +W ++ PD L  ++
Sbjct: 220 LWLLEPPDLLQDLL 230

The following BLAST results are available for this feature:

BLAST of Bhi01G001939 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G001939 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G001939 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039613.1	5.0e-05	51.02	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Cucumis mel...	[more]
TYK01692.1	5.0e-05	51.02	hypothetical protein E5676_scaffold775G00140 [Cucumis melo var. makuwa]	[more]
KAE8649323.1	7.2e-04	45.10	hypothetical protein Csa_014502 [Cucumis sativus]	[more]

BLAST of Bhi01G001939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9F2	2.4e-05	51.02	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Cucumis m...	[more]
A0A5D3BSC1	2.4e-05	51.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6P5TK21	5.9e-04	32.43	uncharacterized protein LOC110768446 OS=Prunus avium OX=42229 GN=LOC110768446 PE...	[more]
A0A6P5S2Z6	7.7e-04	32.43	uncharacterized protein LOC110753401 OS=Prunus avium OX=42229 GN=LOC110753401 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 32..74 e-value: 2.9E-5 score: 23.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001939	Bhi01M001939	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity