Bhi01G000086 (gene) Wax gourd (B227) v1

Overview
NameBhi01G000086
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionreplication factor C subunit 3-like
Locationchr1: 2265938 .. 2268484 (+)
RNA-Seq ExpressionBhi01G000086
SyntenyBhi01G000086
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTTAAGAAAAAAAGAAAAGAAAAGAAAATGGCGTACATGTCAATTATCTACCTTTAAAATTAATGTTTAATTGTTTCTTCGTTCATTCACAGGTTGTATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATGTCTCCCCCAATTTCATTTTTAGGGTAATTTTCTTTTATCTCTCGTTTTTTTTTTTTTTTTCCTTTTAAATTATCTCTTGTATCCAACAATATAACATTTTATAGACACATAAGCCTTAACAAACAATTACTTTTCCAAAGATTTATTCAACTAATCACCCTAAAACATCAATCTAATCTAATGTTGAGGTTTAATAATCGATTTCTCCTCCTACAATTGTCATAAAAAAAAAAAAAGTAAATATCAATTTACACACCCCTAAACTTTAGAGTTGTATCAATTGAATCCCGAAACTAATGGTTGTATTAATTTAAACTTTAAACTATCATATGTGTATCAATTTAAACCTCAAACTAATAATTGTATCGATTAATCCTTAAACTTTCACAACTGTACAATTTAAACCTTTCTTTTTATTATGTTTTATTTGGATACACTTATGGAATTAGTTCAGGATTTAAATTAATATAATTATTAGTTTAATGTTTAAACTGATACTACTCAAAAGTTAAGGGTGTAAATTGTTAAAAAAGAAAAAATGAAAAAAAAAATCTTCTAATTTTTCCTAATTAAAAATTTTGTCTCATATATCTTCTCTTATTCTCTGTAATGCTATGTATGTGCAGACTCTAGTAGATGAATTAAAGAAGTTTTTGGATGAAGAATTACAACGTCGAATTGAGGGTTTCTATGCTGATTATAATGTAAATTTTCCCCCCTTTATTATAAATTTAATTTGTGCATATCTAACTCGTACAAGATTTATTAATGTAAGTGCCATTTTATTATAATATAAGGTTTTTTTTTATAAAAAAAATTAAGAAATAAAATGTGAATGAAATAGTTAAAGAACAATATTAATGTATAGATGTTAATTTGAATTTTAGAAAATGGAGGAAAAATCATTTGTTAGTGAAAAAGGCAGTGGGGAAGAGGCGGTGGCCAAAGGGCAGCATGATCCTATGAGAAAGAATGTTAACCACTTTTTGAAGATTGAAGGTAATATATTTTAATTGAGTGAAAATACTTTTTTTTTCCTTAAATTTTGAGTCCGGTTTTCATTTGTTAGTTCAAAATATTATACTTTTAGTCTTTAAATTTTTAATTTAATTTTAATTAGTTCGTAAATTTCAAAATGCTATAATTTTACTATTGAAATTTAAGTTTTGTTTTAATTTGGTTCATAGGTTTCAAAACTTACACTTGTAAACTACGATTTTTCACTAAATACTCACTTCGGTCTTTCGTGTTAACTTATTAATTAATTTAAAATAATTATGATGTGAAAATTTCAAATTAATTTTAATAGTAATGAAAAATTAGTGAAACTTAGTTAATTGTAATTATTTTAATTTTTTAAAATTAATTAATAGATAGTAATATTAATTATTGAAAGTAAGTATTTAATGAAAAATTGAAGTTAAAAATGTAATATTTTGAAATCTAAAAATTAAATTGAAATCAAACTCAAAAATTAACGGACGAAGTAAAAACCAACCCAAAATAATAGGCGAAAAGTATTTCCCCCTAGGTTAACCATCAACCCAAAAAATGAAAGTTTTATTTACTATTTTTCAGGTTAGTATCTTTTTTAGTTTTATATTTATGTATATATTTAAAAAGAAAACATTGGGTTATCTATTAATTCTATATTTTTTTTTTTTTTTTACAATCATGGAATAAATTTGAATATTTTTATTGTATTTTATATATTTGAACCAATTTTGATTATGCTATTTCTATAAAATTTTAACTTCTTGAAATATTAAAGAAAAGATATATATTATTATGCTAATTGTTTAAATACTTTATTTCGGTCATTCCAGAAAGTAAAAGGTAACTGGCAACGATTTCTGTTTTCGATTTTCTATTTCTAAAAAATAATTTGAGATATTTCCATTGTCTTGGCTAAATCTTTTTACATTTTTAAAAAGACCTTTTAAACCTTAGCCATCTTTTATATACAAACAACATAGCCTACGTTTTAATAAACACAAAATTACATAAAGATTTTTAACAGATTCTTCAAAGTACAGTTCAAAAGATTTTTAATTGTTTTTTTCCCAAGGCTAAGAACACAATAGGTGCTTGTTTTTTCTTTTAAATTTTTAAAAAGTGAAAATTATTACTAGACAAGCTTATATAATTAAAGGTTATTTTTAAATATAAAAAAATGAATCAATTTATTTACAAATATAATCAAATGTCACTGTTTGTGACTATCATTGATAGACAATAACATTTTGTCATCTTTAAATTTTTTTTTAATAATTTTATCATTTAAAATAATTATCTTATAATTAAATTATTTCTTTATTTCTTTCATTTTCTTGTACAGAATTCATAGCGAAGTTCATGAGCTGCTATAAGGGAGAAGCAAATGCCATGAAAATAAATAAATAA

mRNA sequence

ATGGGTTGTATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATGTCTCCCCCAATTTCATTTTTAGGACTCTAGTAGATGAATTAAAGAAGTTTTTGGATGAAGAATTACAACGTCGAATTGAGGGTTTCTATGCTGATTATAATAAAATGGAGGAAAAATCATTTGTTAGTGAAAAAGGCAGTGGGGAAGAGGCGGTGGCCAAAGGGCAGCATGATCCTATGAGAAAGAATGTTAACCACTTTTTGAAGATTGAAGAATTCATAGCGAAGTTCATGAGCTGCTATAAGGGAGAAGCAAATGCCATGAAAATAAATAAATAA

Coding sequence (CDS)

ATGGGTTGTATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATGTCTCCCCCAATTTCATTTTTAGGACTCTAGTAGATGAATTAAAGAAGTTTTTGGATGAAGAATTACAACGTCGAATTGAGGGTTTCTATGCTGATTATAATAAAATGGAGGAAAAATCATTTGTTAGTGAAAAAGGCAGTGGGGAAGAGGCGGTGGCCAAAGGGCAGCATGATCCTATGAGAAAGAATGTTAACCACTTTTTGAAGATTGAAGAATTCATAGCGAAGTTCATGAGCTGCTATAAGGGAGAAGCAAATGCCATGAAAATAAATAAATAA

Protein sequence

MGCIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGSGEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK
Homology
[Close]
BLAST of Bhi01G000086 vs. NCBI nr
Match: XP_011650816.1 (replication factor C subunit 3 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRR+EGFYADYNK+EEK FVSEKGS
Sbjct: 511 IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYNKLEEKVFVSEKGS 570

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK 109
           GEEAV KGQHD +RKNVNHFLKIEEFIAKFMSCYKGEANAMKINK
Sbjct: 571 GEEAVIKGQHDSIRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK 615

[Close]
BLAST of Bhi01G000086 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRR+EGFYADY K+EEK+FVSE+GS
Sbjct: 514 IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGS 573

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK 109
           GEE V KGQ+DP+RKNVNHFLKIEEFIAKFMSCYKGEANAMKINK
Sbjct: 574 GEETVVKGQNDPVRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK 618

[Close]
BLAST of Bhi01G000086 vs. NCBI nr
Match: KAG7028697.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQRR+E FYADYNKMEEK FV+EKG+
Sbjct: 432 IVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGN 491

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 103
           GEEAV K  HDPMRKNVNHFLKIEEFIAKFMSCYKGEAN
Sbjct: 492 GEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 530

[Close]
BLAST of Bhi01G000086 vs. NCBI nr
Match: KAG6597225.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQRR+E FYADYNKMEEK FV+EKG+
Sbjct: 493 IVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGN 552

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 103
           GEEAV K  HDPMRKNVNHFLKIEEFIAKFMSCYKGEAN
Sbjct: 553 GEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 591

[Close]
BLAST of Bhi01G000086 vs. NCBI nr
Match: XP_022975501.1 (replication factor C subunit 3-like [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 6.3e-43
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQRR+E FYADYNKMEEK FV++KG+
Sbjct: 502 IVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTDKGN 561

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 103
           GEEAV K  HDPMRKNVNHFLKIEEFIAKFMSCYKGEAN
Sbjct: 562 GEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 600

[Close]
BLAST of Bhi01G000086 vs. ExPASy TrEMBL
Match: A0A1S3AWH3 (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRR+EGFYADY K+EEK+FVSE+GS
Sbjct: 514 IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGS 573

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK 109
           GEE V KGQ+DP+RKNVNHFLKIEEFIAKFMSCYKGEANAMKINK
Sbjct: 574 GEETVVKGQNDPVRKNVNHFLKIEEFIAKFMSCYKGEANAMKINK 618

[Close]
BLAST of Bhi01G000086 vs. ExPASy TrEMBL
Match: A0A6J1IEE5 (replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111474906 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.1e-43
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQRR+E FYADYNKMEEK FV++KG+
Sbjct: 502 IVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTDKGN 561

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 103
           GEEAV K  HDPMRKNVNHFLKIEEFIAKFMSCYKGEAN
Sbjct: 562 GEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 600

[Close]
BLAST of Bhi01G000086 vs. ExPASy TrEMBL
Match: A0A6J1G337 (replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450354 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-43
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQ R+E FYADYNKMEEK FV+EKG+
Sbjct: 493 IVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQHRVESFYADYNKMEEKPFVTEKGN 552

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 103
           GEEAV K  HDPMRKNVNHFLKIEEFIAKFMSCYKGEAN
Sbjct: 553 GEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEAN 591

[Close]
BLAST of Bhi01G000086 vs. ExPASy TrEMBL
Match: A0A5D3D1K1 (Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003550 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRR+EGFYADY K+EEK+FVSE+GS
Sbjct: 434 IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGS 493

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIE 88
           GEE V KGQ+DP+RKNVNHFLKIE
Sbjct: 494 GEETVVKGQNDPVRKNVNHFLKIE 517

[Close]
BLAST of Bhi01G000086 vs. ExPASy TrEMBL
Match: A0A5A7TZV7 (Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003010 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 4   IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRIEGFYADYNKMEEKSFVSEKGS 63
           IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRR+EGFYADY K+EEK+FVSE+GS
Sbjct: 500 IVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGS 559

Query: 64  GEEAVAKGQHDPMRKNVNHFLKIE 88
           GEE V KGQ+DP+RKNVNHFLKIE
Sbjct: 560 GEETVVKGQNDPVRKNVNHFLKIE 583

The following BLAST results are available for this feature:
BLAST of Bhi01G000086 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G000086 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G000086 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650816.12.9e-4894.29replication factor C subunit 3 [Cucumis sativus][more]
XP_008438224.14.2e-4791.43PREDICTED: replication factor C subunit 3-like [Cucumis melo][more]
KAG7028697.12.8e-4390.91Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
KAG6597225.12.8e-4390.91Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022975501.16.3e-4389.90replication factor C subunit 3-like [Cucurbita maxima][more]
BLAST of Bhi01G000086 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AWH32.1e-4791.43replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4... [more]
A0A6J1IEE53.1e-4389.90replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111474906 ... [more]
A0A6J1G3375.2e-4389.90replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC11145035... [more]
A0A5D3D1K11.5e-3489.29Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TZV71.5e-3489.29Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availableGENE3D1.20.272.10coord: 3..97
e-value: 4.4E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 4..99
NoneNo IPR availablePANTHERPTHR11669:SF52OS10G0574500 PROTEINcoord: 4..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000086Bhi01M000086mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0003677 DNA binding