Cucurbit Expression Atlas


Overview of this BioProject:

BioProjectPRJNA312872
To elucidate the VOCs biosynthetic pathway in cucumber, we obtained the transcriptome data of 23 samples using RNA-seq technique. We generated a total of 53G high-quality base pairs (at least 2G for each sample).Based on the metabolic networks generated from transcriptome and metabolome data, we obtained the comprehensive information of cucumber VOC metabolism.

Properties this BioBroject:

Property NameValue
Data typeTranscriptome or Gene expression
Sample scopeMultiisolate
MaterialTranscriptome
CaptureRandomSurvey

BioSamples of this BioProject:

BioSampleOrganismDescription
Cotyledon_4Week_SeedlingsCucumberCotyledon from 4-week-old seedlings ; cultivar : 9930; dev_stage : 4-week-old seedlings; tissue : Cotyledon from 4-week-old seedlings;
FemaleFlowerCucumberFemale Flower from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Female Flower from 12-week-old cucumber plants;
Flesh_2Week_FruitCucumberFlesh 2 Week Fruit ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Flesh 2 Week Fruit;
Flesh_3Week_FruitCucumberFlesh 3 Week Fruit ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Flesh 3 Week Fruit;
Flesh_UnfertilizedOvaryCucumberFlesh Unfertilized Ovary from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Flesh Unfertilized Ovary from 12-week-old cucumber plants;
FleshWeek_FruitCucumberFlesh 1 Week Fruit ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Flesh 1 Week Fruit;
Hypocotyl_4Week_SeedlingsCucumberHypocotyl from 4-week-old seedlings ; cultivar : 9930; dev_stage : 4-week-old seedlings; tissue : Hypocotyl from 4-week-old seedlings;
MaleFlower_BudCucumberMale Flower Bud from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Male Flower Bud from 12-week-old cucumber plants;
MaleFlowerCucumberMale Flower from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Male Flower from 12-week-old cucumber plants;
OldLeafCucumberOld Leaf from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Old Leaf from 12-week-old cucumber plants;
Peel_2Week_FruitCucumberPeel 2 Week Fruit ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Peel 2 Week Fruit;
Peel_3Week_FruitCucumberPeel 3 Week Fruit ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Peel 3 Week Fruit;
Peel_UnfertilizedOvaryCucumberPeel Unfertilized Ovary from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Peel Unfertilized Ovary from 12-week-old cucumber plants;
PeelWeek_FruitCucumberPeel 1 Week Fruit ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Peel 1 Week Fruit;
Petiole_OldLeafCucumberPetiole Old Leaf from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Petiole Old Leaf from 12-week-old cucumber plants;
Petiole_YoungLeafCucumberPetiole Young Leaf from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Petiole Young Leaf from 12-week-old cucumber plants;
Root_4Week_SeedlingsCucumberRoot from 4-week-old seedlings ; cultivar : 9930; dev_stage : 4-week-old seedlings; tissue : Root from 4-week-old seedlings;
RootCucumberRoot from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Root from 12-week-old cucumber plants;
StemCucumberStem from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Stem from 12-week-old cucumber plants;
TendrilCucumberTendril from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Tendril from 12-week-old cucumber plants;
TrueLeaf_4Week_SeedlingsCucumberTrue Leaf from 4-week-old seedlings ; cultivar : 9930; dev_stage : 4-week-old seedlings; tissue : True Leaf from 4-week-old seedlings;
UnfertilizedOvaryCucumberUnfertilized Ovary from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Unfertilized Ovary from 12-week-old cucumber plants;
YoungLeafCucumberYoung Leaf from 12-week-old cucumber plants ; cultivar : 9930; dev_stage : 12-week-old cucumber plants; tissue : Young Leaf from 12-week-old cucumber plants;