Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACGTATAGGGCTGTTTTTGCAAGCCTATCAGGAGTTGCCAATTGGACCGCTTTAGCCCAGCATTGGTCTTTTAATTGGGCCG GTTGGTCAGGCCCATCAGCCCAATTTGGCAACCTTCCGAAAATTCCGTACGTGGGGATTTTGCCTCGTTCATTCCCATGCTAAGCCATCCAATCGCAGGGAGAGGACAATTTAGAGCCACATTTTCTACGTAACCGCATAAATTATAAATAAAATAAATAAAAAAAAAGGCAGAATTATTTGAAATTAAAAAAAAAAAAAAAGGCTGCTAATAAAGGATGGGAGGTAATTTTATATTATAAAGGATTTAAAAATAAAAATAAAAATAATGGGTAAACCTAATTCGATGGTTCGGTGACTGTTACTTTTACATTTCACCACACACTTCCAAAATGGTAAAACCTCAACCGTTGATTGAAATCTGAAGGGAAGAGCCCACGGTTTTGCCCTAACTCGACTTAACCCTAAGAAATTGATTTTTCCCAAATTGAATACTGGGGGGACAGAATTGCCCTTGTGTGGTCATTAGAATACCGAAAATGCCCTTGGATTAAATTTAAAACTGGGTAATCCACAATAGTGCCCTAATTTGAGATGGGTGAGGGAGGGGGAGAGGTAATCAACGGGCTGTAGCCGGTAAACCCATAGAGTGTGACCGGTTAAATGGATTATAGTGCCCCATTAACCCAAGTTTTGTTTGTGTTGGGTTGAGGAAGTGTAAACTTGTACATCCATCAAGCTTCTGGTCGTATATATTATCGAATTCTTAAAGGCTCTCTCTGTGTTATTTAATTTTGAAGTTTCAATTTGATTCAGAAGCATTTTCTCGTCTGTGAGGAGTTCGGTTTCCGGAGAGGGAAAAAGGGGAAGAAAAACCTAAAACAGAAGAGGAAGAAGAAGAAGAAGAACATTCGAAGAACTTCAATTTTGGTTTTGATTTGCGTATTCTTTCTGTCAAAG GTTGTGAGAGAACAGAATCACAGATTCCTTCTATACTTTCCTCTCTTCTTCATCTTCATTTTTATCCCTTTCTCTTCTTCTTCTTATTCTCCCACTTGTTCATGCTTCACACTTTCTGCTAATTCTGCGACTTCACGATCTTTCCTTAACTCATACCCTTTAATGTAATTTCTGTTTCTTCTTTAATGTTCTTACTTTTTCTTTCTTAATCATCTCGTCTTTTGCTTTATCCGTAAGTAACAATGTTTTCTTTGTGTGTTGTGTTGTGTTTGTGTTTTCAGGATTCTGGTTATGGGGAGGTGATCTGAACAGAG GTTTGGATGGAAATTTTTGCTCTTGGTTTTTCTCTCTTTGGTGTTTTACTATTTTTACGTATATTAGATCTGTCTTTCTCTTGTTGAATGAGCGACTTCTTGTGTAGGAATTTTTATTCTAATCTGA mRNA sequence
ATGTTGACGTATAGGGCTGTTTTTGCAAGCCTATCAGGAGTTGCCAATTGGACCGCTTTAGCCCAGCATTGGTCTTTTAATTGGGCCGGAGTTCGGTTTCCGGAGAGGGAAAAAGGGGAAGAAAAACCTAAAACAGAAGAGGAAGAAGAAGAAGAAGAACATTCGAAGAACTTCAATTTTGGTTTTGATTTGCGTATTCTTTCTGTCAAAGGATTCTGGTTATGGGGAGGTGATCTGAACAGAGGAATTTTTATTCTAATCTGA Coding sequence (CDS)
ATGTTGACGTATAGGGCTGTTTTTGCAAGCCTATCAGGAGTTGCCAATTGGACCGCTTTAGCCCAGCATTGGTCTTTTAATTGGGCCGGAGTTCGGTTTCCGGAGAGGGAAAAAGGGGAAGAAAAACCTAAAACAGAAGAGGAAGAAGAAGAAGAAGAACATTCGAAGAACTTCAATTTTGGTTTTGATTTGCGTATTCTTTCTGTCAAAGGATTCTGGTTATGGGGAGGTGATCTGAACAGAGGAATTTTTATTCTAATCTGA Protein sequence
MLTYRAVFASLSGVANWTALAQHWSFNWAGVRFPEREKGEEKPKTEEEEEEEEHSKNFNFGFDLRILSVKGFWLWGGDLNRGIFILI
Homology
BLAST of CmaCh04G003110 vs. NCBI nr
Match:
KAG6600147.1 (hypothetical protein SDJN03_05380, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 95.1 bits (235), Expect = 3.1e-16
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0
Query: 33 FPEREKGEEKPK-TEEEEEEEEHSKNFNFGFDLRILSVKGFWLWGGDLNRGIFILI 88 F +KGEEKPK EEEEEEEEH KNFNFGFDLRILSVKGFWLWGGDLNRGIFILI Sbjct: 29 FKRGKKGEEKPKREEEEEEEEEHLKNFNFGFDLRILSVKGFWLWGGDLNRGIFILI 84
BLAST of CmaCh04G003110 vs. NCBI nr
Match:
KAG7030812.1 (Paired amphipathic helix protein Sin3-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 63.9 bits (154), Expect = 7.7e-07
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0
Query: 1 MLTYRAVFASLSGVANWTALAQHWSFNWAG 31 MLTYRAVFASLSGVANW+ALAQHW FNWAG Sbjct: 1 MLTYRAVFASLSGVANWSALAQHWCFNWAG 30
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
KAG6600147.1 3.1e-16 87.50 hypothetical protein SDJN03_05380, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030812.1 7.7e-07 93.33 Paired amphipathic helix protein Sin3-like 4, partial [Cucurbita argyrosperma su... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
A T G T T G A C G T A T A G G G C T G T T T T T G C A A G C C T A T C A G G A G T T G C C A A T T G G A C C G C T T T A G C C C A G C A T T G G T C T T T T A A T T G G G C C G G A G T T C G G T T T C C G G A G A G G G A A A A A G G G G A A G A A A A A C C T A A A A C A G A A G A G G A A G A A G A A G A A G A A G A A C A T T C G A A G A A C T T C A A T T T T G G T T T T G A T T T G C G T A T T C T T T C T G T C A A A G G A T T C T G G T T A T G G G G A G G T G A T C T G A A C A G A G G A A T T T T T A T T C T A A T C T G A 20 40 60 80 100 120 140 160 180 200 220 240 260 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 36..55
Relationships
The following mRNA feature(s) are a part of this gene: