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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTGCCTATTATCCTCTCACCAGTTTCTGAATCCCCCGTCATCATAATAACATTCTCCAACTCGCGACCTAACCTTAATAAGCCCTTACTTGATCAAAAGTGCATTGTTAGCCAAAGAAAAACTCCCCAACCCTAAGGAAGATCTACAGTGCGTTCCTCCCCTTTCGTACACTGCTATACATATTTTCAAGAAGGAAGACGTGCATCTCGCTTGTAAACCCCAAAACCTAAGAATCCTTAAGTCATCTAAGGAACTAAAGAGGAGATTAGAGGTTAAGGTCAGGAAAAAGATGGTTTAA mRNA sequence ATGTTGCCTATTATCCTCTCACCAGTTTCTGAATCCCCCGTCATCATAATAACATTCTCCAACTCGCGACCTAACCTTAATAAGCCCTTACTTGATCAAAAGTGCATTGAAGATCTACAGTGCGTTCCTCCCCTTTCGTACACTGCTATACATATTTTCAAGAAGGAAGACGTGCATCTCGCTTGTAAACCCCAAAACCTAAGAATCCTTAAGTCATCTAAGGAACTAAAGAGGAGATTAGAGGTTAAGGTCAGGAAAAAGATGGTTTAA Coding sequence (CDS) ATGTTGCCTATTATCCTCTCACCAGTTTCTGAATCCCCCGTCATCATAATAACATTCTCCAACTCGCGACCTAACCTTAATAAGCCCTTACTTGATCAAAAGTGCATTGAAGATCTACAGTGCGTTCCTCCCCTTTCGTACACTGCTATACATATTTTCAAGAAGGAAGACGTGCATCTCGCTTGTAAACCCCAAAACCTAAGAATCCTTAAGTCATCTAAGGAACTAAAGAGGAGATTAGAGGTTAAGGTCAGGAAAAAGATGGTTTAA Protein sequence MLPIILSPVSESPVIIITFSNSRPNLNKPLLDQKCIEDLQCVPPLSYTAIHIFKKEDVHLACKPQNLRILKSSKELKRRLEVKVRKKMV
Homology
BLAST of IVF0023835.1 vs. ExPASy TrEMBL
Match: A0A5D3CHB7 (RNA-dependent RNA polymerase, mitoviral OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001420 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 Query: 37 EDLQCVPPLSYTAIHIFKKEDVHLACKPQNLRILKSSKELKRRLEVKVRKKM 89 EDLQCVPP SYTAIHIFK+EDVHLACKP+N RI K SKELKRRLEV+ K + Sbjct: 283 EDLQCVPPHSYTAIHIFKEEDVHLACKPRNSRIHKLSKELKRRLEVEAAKSV 334
BLAST of IVF0023835.1 vs. NCBI nr
Match: TYK11283.1 (RNA-dependent RNA polymerase, mitoviral [Cucumis melo var. makuwa]) HSP 1 Score: 80.9 bits (198), Expect = 1.24e-15 Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 Query: 37 EDLQCVPPLSYTAIHIFKKEDVHLACKPQNLRILKSSKELKRRLEVKVRK 86 EDLQCVPP SYTAIHIFK+EDVHLACKP+N RI K SKELKRRLEV+ K Sbjct: 283 EDLQCVPPHSYTAIHIFKEEDVHLACKPRNSRIHKLSKELKRRLEVEAAK 332
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CHB7 | 2.3e-12 | 78.85 | RNA-dependent RNA polymerase, mitoviral OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
Match Name | E-value | Identity | Description | |
TYK11283.1 | 1.24e-15 | 82.00 | RNA-dependent RNA polymerase, mitoviral [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0023835 | IVF0023835 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0023835.1-exon | IVF0023835.1-exon-chr03:20188587..20188694 | exon |
IVF0023835.1-exon | IVF0023835.1-exon-chr03:20188726..20188887 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0023835.1-cds | IVF0023835.1-cds-chr03:20188587..20188694 | CDS |
IVF0023835.1-cds | IVF0023835.1-cds-chr03:20188726..20188887 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0023835.1 | IVF0023835.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0001172 |
transcription, RNA-templated |
molecular_function |
GO:0003968 |
RNA-directed 5'-3' RNA polymerase activity |
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