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Cp4.1LG01g05410.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGAGTTGACTCAGCCTGATGTCTACTCGCTGAGGACTCTGCAGGTGTGGAAGACGTTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTCAGATCCTCAGAGCTTTTGGACACCTTCGGCTTCTTTCTTCTTCTGATTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAGCTTCCTGATCATGAATTTCTTGCTGCCTCTGCCGTTGATATTGCCTCTGTTGAAGATGAGGAGGAGTCCGACGGGCTTATGGAGAAACTGACGGTATTGTGATTTTCTTGTTGATTTCTCGTTGTGAACATCGTGTTTTCCCCCCAAATTTGTTTGCTGGAAAGAATTTGTGTTTGGATTCTATTTGTGCTGGTTTTTTTTCATGAAACTGTGCAATTGTTGCGCTGATTAGGTTTGCTTGATTTTGCAATTATTCGTCTATGGCAATGATTTCAACAGATATGCTTAAGTTCGTTTAATGTTTGTGAGAGTTTGGGAGTAATGTTTAACCCGGCTTGGCCCTGGTGTACGTGAGAAAATTATTGATATCATTTTGGGGAAGAGGAGACGAGCCTTTTCTTGATGAAAATAGGGACAGGAAAGCTTCAACTTCATTCCCTATGGTTCTGCAGTATTTCATTTTGATGATTCATTAGTAGTAGATGAAAGAATCTAGCTCTGGGACTCTGTAAATGATTATTCCAATCTGGACGAACTATATTCGTCCATTTTAGAACTGAATTTTATGATTTGAAAATGTTTTCCTGTGCTATGTAAAGCTTCTGATGTTAGAAGTTTGTGGAGATGCCGTGTGAAGCTGTGAAGTTAAAGTCGTTTCAAGAAATTACATATGGCTCATTCCTCTTTTATCTTCCTTTTGTTTCCCTTGTGTGCTTCCTTTATTAATTCCACATCTGGCATTGGACAATTACAGATAGTTCTCGATTTGGATGAAACTCTCATATGTGCATATGAGACATCCACTCTGCCTGCTGTTGTTCGTAATCAAGCAATAGAAGCTGGACTGAAGTGTTTCGAACTCGAGTGTTTTTCTTCAGATAAGGTAGTTTACTTTCCAGTAACCTTGTATTGATTTGGTTTTGTGAGTTTTAGTTAAACCATCTTACCTGGGTATGCTGCTATTTGAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCGGGTTTGCATGATTTCTTAAATCAACTAGGTAGCTTTGCAGATCTTGTACTATTCACGGCTGGTCTTGAAGGTTTGTACACTTTACTATCCATTATATTATCAGGTAATATCCTTGCCCATAATAGAAAAATAAAAGAGAATCTGAAGGATGTCATCTATGTGTATGCCTCAGGATATGCAAGACCTCTTGTTGACAGGATAGATGAAGAAAATCGATTTAGTCTTCGACTGTATAGGCCTTCAACAATTAGCACGTAAGTACTTCTCTGCTATTTTCTTCTTTTCTATTCGATCAGCATAGCAACTATTTGCTATGTTTACTTATCTAGATTGGCAATATTCAAGTCTATTGACGCTTCAACTGTGGAAAGACATTATACTATTATGATTATTGAACACACCCTTTCCAAAAACAAGTTTGAATTATTCAGGAGTTCGAATAAGAATTTGTTCGTGTACATGTATTTATATCCTTAAGTCCATTCTTTATTGATATTGAATGCAGTGATTAAGTGCATATGTTTGGCAGTGATTTTGGATAGGACATAAACATGCCCCAATTGTTGATAAGTTTGTTTAGTTAGTAGTTAAATTTATCAAGATTAAATGGAAACTGAGTTATTATTATTATTTTTTTGGTAAGAAACTGAGCTTTCACTTGGTACATTATTTAGATCCTCACAGAAGTTAAAAGCACCCACTTTCAAAGTGTTTTTTTTTTTTTTCTTTTACCCATTTCAAGTTAAGCTAAAAGCACTTACTTTAAAGCTAAGTATCCCAATTGTGTCTATTCTCTGTAAAACCCATGGTTCTGGTATGTAATCTACAGGGAATATCGAGATCACGTGAAGGATCTCAGCTGCCTATCCAAGGATCTAAGAAGAACAGTCATCGTTGATAACAATCCTTTCAGTTTTCTATTGCAACCTGTGAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGGTGGGAAAACAATGAAAATTCTGAATCTTTCAACAACAGTACATCTTCACAATAATTCATTTTGTGACCGTCTTCCTTGTTCTCCATATACAGCTTCTAGATGTCATTCTTCCACTCCTAAAGCACCTCTCGCTGCAGAACGACGTCAGATCAGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCCAACCTAAATTCAACGAAAATCTGTGCCAAGGAGAAAGGTACATTCTTCTCTGCTCATGCAACAGTTAAACACAGTTAGCTTGCTTGTTCAAAAGGGCAGAGCACATTTAGGAGTCAGATTCTGATTCTTGAACTTCTGTATAGCTTCATGTTGTACATCGTGGATATGGTCCTGAAAAGTTGCATCCAATTGTTTGAAAATCATAGTAGTATTAAGATTGTAAATTTGTAGGAATTCTGATTTGTAATTTATTAATGCAGTGTTGTTGGATATGTTTGTAGGAATTTTCTTGAACTTTTTACCAATAAATATCAGTTGTTTCCTCCCTTTGGTTGCTTTAACTGTTTTGTGGCTTCTCCAGAATATTAAAAATTAAGGTATTTAGAAGAGTTAGAGTAAAAAAGAA ATGGCTGAGTTGACTCAGCCTGATGTCTACTCGCTGAGGACTCTGCAGGTGTGGAAGACGTTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTCAGATCCTCAGAGCTTTTGGACACCTTCGGCTTCTTTCTTCTTCTGATTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAGCTTCCTGATCATGAATTTCTTGCTGCCTCTGCCGTTGATATTGCCTCTGTTGAAGATGAGGAGGAGTCCGACGGGCTTATGGAGAAACTGACGATAGTTCTCGATTTGGATGAAACTCTCATATGTGCATATGAGACATCCACTCTGCCTGCTGTTGTTCGTAATCAAGCAATAGAAGCTGGACTGAAGTGTTTCGAACTCGAGTGTTTTTCTTCAGATAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCGGGTTTGCATGATTTCTTAAATCAACTAGGTAGCTTTGCAGATCTTGTACTATTCACGGCTGGTCTTGAAGGATATGCAAGACCTCTTGTTGACAGGATAGATGAAGAAAATCGATTTAGTCTTCGACTGTATAGGCCTTCAACAATTAGCACGGAATATCGAGATCACGTGAAGGATCTCAGCTGCCTATCCAAGGATCTAAGAAGAACAGTCATCGTTGATAACAATCCTTTCAGTTTTCTATTGCAACCTGTGAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGCTTCTAGATGTCATTCTTCCACTCCTAAAGCACCTCTCGCTGCAGAACGACGTCAGATCAGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCCAACCTAAATTCAACGAAAATCTGTGCCAAGGAGAAAGGTACATTCTTCTCTGCTCATGCAACAGTTAAACACAGTTAGCTTGCTTGTTCAAAAGGGCAGAGCACATTTAGGAGTCAGATTCTGATTCTTGAACTTCTGTATAGCTTCATGTTGTACATCGTGGATATGGTCCTGAAAAGTTGCATCCAATTGTTTGAAAATCATAGTAGTATTAAGATTGTAAATTTGTAGGAATTCTGATTTGTAATTTATTAATGCAGTGTTGTTGGATATGTTTGTAGGAATTTTCTTGAACTTTTTACCAATAAATATCAGTTGTTTCCTCCCTTTGGTTGCTTTAACTGTTTTGTGGCTTCTCCAGAATATTAAAAATTAAGGTATTTAGAAGAGTTAGAGTAAAAAAGAA ATGGCTGAGTTGACTCAGCCTGATGTCTACTCGCTGAGGACTCTGCAGGTGTGGAAGACGTTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTCAGATCCTCAGAGCTTTTGGACACCTTCGGCTTCTTTCTTCTTCTGATTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAGCTTCCTGATCATGAATTTCTTGCTGCCTCTGCCGTTGATATTGCCTCTGTTGAAGATGAGGAGGAGTCCGACGGGCTTATGGAGAAACTGACGATAGTTCTCGATTTGGATGAAACTCTCATATGTGCATATGAGACATCCACTCTGCCTGCTGTTGTTCGTAATCAAGCAATAGAAGCTGGACTGAAGTGTTTCGAACTCGAGTGTTTTTCTTCAGATAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCGGGTTTGCATGATTTCTTAAATCAACTAGGTAGCTTTGCAGATCTTGTACTATTCACGGCTGGTCTTGAAGGATATGCAAGACCTCTTGTTGACAGGATAGATGAAGAAAATCGATTTAGTCTTCGACTGTATAGGCCTTCAACAATTAGCACGGAATATCGAGATCACGTGAAGGATCTCAGCTGCCTATCCAAGGATCTAAGAAGAACAGTCATCGTTGATAACAATCCTTTCAGTTTTCTATTGCAACCTGTGAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGCTTCTAGATGTCATTCTTCCACTCCTAAAGCACCTCTCGCTGCAGAACGACGTCAGATCAGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCCAACCTAA MAELTQPDVYSLRTLQVWKTLLNWLAFFFQIFVQILRAFGHLRLLSSSDSDSSSPSFKPLPVVELPDHEFLAASAVDIASVEDEEESDGLMEKLTIVLDLDETLICAYETSTLPAVVRNQAIEAGLKCFELECFSSDKDCEGKPKVNYVTVFERPGLHDFLNQLGSFADLVLFTAGLEGYARPLVDRIDEENRFSLRLYRPSTISTEYRDHVKDLSCLSKDLRRTVIVDNNPFSFLLQPVNGIPCIPFSAGQPHDSQLLDVILPLLKHLSLQNDVRSVLYERFHMPEWFQKHGIPT Homology
BLAST of Cp4.1LG01g05410.1 vs. ExPASy Swiss-Prot
Match: Q9GZU7 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens OX=9606 GN=CTDSP1 PE=1 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19 Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy Swiss-Prot
Match: P58466 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus OX=10090 GN=Ctdsp1 PE=1 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19 Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy Swiss-Prot
Match: Q09695 (Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC2F7.02c PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.8e-19 Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy Swiss-Prot
Match: Q07949 (Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PSR2 PE=1 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 6.2e-19 Identity = 63/190 (33.16%), Postives = 103/190 (54.21%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy Swiss-Prot
Match: Q9VRG7 (CTD nuclear envelope phosphatase 1 homolog OS=Drosophila melanogaster OX=7227 GN=Dd PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 8.2e-19 Identity = 68/196 (34.69%), Postives = 102/196 (52.04%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. NCBI nr
Match: XP_023518709.1 (CTD nuclear envelope phosphatase 1 homolog isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 597 bits (1538), Expect = 3.74e-215 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. NCBI nr
Match: KAG6599998.1 (CTD nuclear envelope phosphatase 1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 595 bits (1533), Expect = 2.16e-214 Identity = 294/296 (99.32%), Postives = 296/296 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. NCBI nr
Match: KAG7030671.1 (CTD nuclear envelope phosphatase 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 593 bits (1530), Expect = 6.20e-214 Identity = 293/296 (98.99%), Postives = 296/296 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. NCBI nr
Match: XP_022996141.1 (CTD nuclear envelope phosphatase 1 homolog isoform X2 [Cucurbita maxima]) HSP 1 Score: 593 bits (1530), Expect = 6.20e-214 Identity = 293/296 (98.99%), Postives = 295/296 (99.66%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. NCBI nr
Match: XP_022942852.1 (CTD nuclear envelope phosphatase 1 homolog [Cucurbita moschata]) HSP 1 Score: 588 bits (1517), Expect = 5.73e-212 Identity = 293/296 (98.99%), Postives = 295/296 (99.66%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy TrEMBL
Match: A0A6J1K3V8 (CTD nuclear envelope phosphatase 1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491444 PE=4 SV=1) HSP 1 Score: 593 bits (1530), Expect = 3.00e-214 Identity = 293/296 (98.99%), Postives = 295/296 (99.66%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy TrEMBL
Match: A0A6J1FRE3 (CTD nuclear envelope phosphatase 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111447759 PE=4 SV=1) HSP 1 Score: 588 bits (1517), Expect = 2.77e-212 Identity = 293/296 (98.99%), Postives = 295/296 (99.66%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy TrEMBL
Match: A0A6J1K5W1 (CTD nuclear envelope phosphatase 1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491444 PE=4 SV=1) HSP 1 Score: 576 bits (1485), Expect = 7.65e-207 Identity = 293/330 (88.79%), Postives = 295/330 (89.39%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy TrEMBL
Match: A0A6J1DT92 (CTD nuclear envelope phosphatase 1 homolog OS=Momordica charantia OX=3673 GN=LOC111023754 PE=4 SV=1) HSP 1 Score: 553 bits (1425), Expect = 3.27e-198 Identity = 275/298 (92.28%), Postives = 286/298 (95.97%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. ExPASy TrEMBL
Match: A0A0A0KM39 (FCP1 homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G203410 PE=4 SV=1) HSP 1 Score: 546 bits (1406), Expect = 2.48e-195 Identity = 273/296 (92.23%), Postives = 278/296 (93.92%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. TAIR 10
Match: AT3G55960.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 405.6 bits (1041), Expect = 3.4e-113 Identity = 207/300 (69.00%), Postives = 244/300 (81.33%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. TAIR 10
Match: AT1G29780.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 101.3 bits (251), Expect = 1.4e-21 Identity = 64/171 (37.43%), Postives = 97/171 (56.73%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. TAIR 10
Match: AT5G45700.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18 Identity = 61/159 (38.36%), Postives = 82/159 (51.57%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. TAIR 10
Match: AT1G29770.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 87.8 bits (216), Expect = 1.6e-17 Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 0
BLAST of Cp4.1LG01g05410.1 vs. TAIR 10
Match: AT5G11860.1 (SCP1-like small phosphatase 5 ) HSP 1 Score: 86.3 bits (212), Expect = 4.6e-17 Identity = 64/195 (32.82%), Postives = 107/195 (54.87%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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